Homology
BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match:
A0A835YLV5_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA)
HSP 1 Score: 1160 bits (3000), Expect = 0.000e+0
Identity = 670/670 (100.00%), Postives = 670/670 (100.00%), Query Frame = 2
Query: 50 MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAA 2059
MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAA
Sbjct: 1 MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAA 670
BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match:
A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)
HSP 1 Score: 111 bits (277), Expect = 9.640e-22
Identity = 81/240 (33.75%), Postives = 111/240 (46.25%), Query Frame = 2
Query: 908 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTP-SGAMRAAEVVELRIVLQNI--GVGARGTATAYLPRQP--LRVATRGSSDG 1612
+++A VFG +L + FL SLE A + RDWR +C WDC W+ C +RWRL + R E W+ P+ G + + R + APP +W+ +Y LHR++ P G C S VIGR+ G VW+AL RRSNGMT RSV+T S +R EV+ELR V+Q + G R A+ R+ LR + SDG
Sbjct: 199 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGT-----GKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPS----------------HMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEGPAVRVHPHAFKVRRVSGLRALLKDHSDG 400
BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match:
D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)
HSP 1 Score: 107 bits (268), Expect = 1.890e-20
Identity = 71/212 (33.49%), Postives = 98/212 (46.23%), Query Frame = 2
Query: 908 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTP-SGAMRAAEVVELRIVLQNIGVG 1540
+++A VFG +L + FL SLE A + R+WR +C WDC W+ C +RWRL + R E W+ P+ G + R + APP +W+ +Y LH ++ P G C S VIGR+ G VW+AL RRSNGMT RSV+T S +R EV+ELR V+Q + G
Sbjct: 344 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGK---------GKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPS----------------HMVIGRSVQEGVAVWIALTRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEG 513
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350510 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 0.00e+0 / Id = 100.00 Expect = 9.64e-22 / Id = 33.75 Expect = 1.89e-20 / Id = 33.49 Sequence A0A835YLV5_9STRA A0A6H5JYB8_9PHAE D8LR75_ECTSI back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|350510|estExt_Genemark1.C_Ctg_650007 Hectar predicted targeting category other localisation TranscriptId 350832 Track FilteredModels1 ProteinId 350510
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_12644 ID=mRNA_12644|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2278bp|location=Sequence derived from alignment at Contig_65:56407..61154+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GGCGGGTGCAGTTGAGTGGAACTTCAGCAGTGGCTGTACTAGCAACAGCA back to top protein sequence of jgi.p|Trimin1|350510
>Trimin1|350510|estExt_Genemark1.C_Ctg_650007 ID=Trimin1|350510|estExt_Genemark1.C_Ctg_650007|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=699bp
MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSP back to top mRNA from alignment at Contig_65:56407..61154+
Legend: exon five_prime_UTR polypeptide CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12644 ID=mRNA_12644|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4748bp|location=Sequence derived from alignment at Contig_65:56407..61154+ (Tribonema minus UTEX_B_3156 )GGCGGGTGCAGTTGAGTGGAACTTCAGCAGTGGCTGTACTAGCAACAGC A
TGGACTCTCTCTCCACGGAAGCATTGTCGGGCCTGGACGAGGCCCTGCTG
GTACTCTTCGATCTGGAGCCGCCCTTGCACGGCGGCGGCTCCTGCGTATC
ATCCGACGGAGCGCCGTCCTTGCACGCCCAGGGCAAGGATGATTCTCCTG
CGTTGGCGGGCATGCCGGAGCCGACCGCGTTCCTGCTGCCTCAGCTTCAG
CAGCAGCTCGGTGGCGGCGGCGCTCCCGCCGTGGCCGCTCCCAAGAAGCC
CTCCACCATAAGCAGCGAGACCTATGAGAGGAAGAAGGGCAGGGCCAAGA
TGCTCAGGCAGGAAATCAGTGACAGGTTTGACGACCTGCAGGCGCTGCTG
CTGGAGGCGGGCTCCAGCGTCGACACCACCTTCATCCGCGAGAAGGGCGC
CAAGCGGTCCTCCATCCTCGATGCCGCCATAGCGGTCATCAGGTCTCTCT
CAGCCAGGGTGGCAGCCTGTGAACCGGGAGGCGACGCACCATCAGCTGCT
GCCGACGGCAAGGATTCAGCGGCGCCGGCGCCGGCGCCGCTGCAGTACGG
ATTTGCTGGGAGCGGACTTTCTCTGCGCTTGCCACTGCCACCGCTGGGGC
ATGCATCGGCGGGAGCGCTGGCTGCTGCTGCTGATCAGCTGGCGGCGGCG
CAGTCAAAGCAAGCACTTCCCCTGCCGCAGCAGCGCGTCGTCAGCGCAG CCGTGACAGCTCCGCCAACCGCGA
CTGCCGCCACACCACCCGCCCCGGCCGCGACGCCGCTGCTGCCGGCGCCG
CCGCTGCTGCCACTAGCAACCGCGGCGCCCAGGCGCGCCGCCATCGCCCA
CCTGCCGCTGCCGCCGCAGCAGCTCTCGGCGGACTCAGCGGCGGCAGCGG
TGTTCGGCGCGTCGTGCGCGCTGCCGATACACGCGTTCCTGGACGCGGCG
TCGCTGGAGGCGGCGCGCCGCGCGTGCCGCGACTGGCGCGCGCGCTGCGC
GTGGGACTGCACGTGGGCGCGGCAGTGCGCGGCGCGCTGGCGCCTGCGCG
GCCAGGACCGCGCGCTCGAGGCGTGGCAGGCGCGCTTCTCGCGG GTATCCAACGCGCAGCGGCTGCGCAGGCGGGAC
TGCGCACCTGAGACGCGGGCAGGCGCGCTGCTTCGCGCCGGCGAGCGCTG
CCACGCTCAGCTTGAGCAGTACTACCGC GACCCGGAGGCGCTCGCCGCGCCGC
CGGTGAGCTGGCGCGAGGTGTACTGCGCGCTGCACAGGGAGCTGCGCCTG
CCGGACGGCGCGCTGTGCGTGAGCGCCGCCGCCGCTGCCGCCGCCGCGGC
GCCGCACGCGCTTGGCCGCGGCGAGGACGTCATCGGGCGCGCGGCGGGCG
GCGGCGCGTGCGTCTGGGTGGCGCTGTGCCGCCGCAGCAACG GCATGACGGCGCGCTCCGTCGTGACGCCCAGCGGCGCCAT
GCGCGCGGCGGAGGTCGTGGAGCTGCGCATCGTCCTGCAGAACATTGGCG
TGGGCGCGCGCGGCACCGCCACGGCGTACCTCCCGCGCCAGCCGCTGCGC
GTGGCGACGCGCGGCAGCAGCGACGGCAGCAGCGGCGGCGGCAGCGGCGG
CGGCGGCGCGTCCTCCTTCTTCGTGGAGGCGATCGGGGACCCCAGGCTGT
CCAGCCAGCTGGTGAGGAAGGGTGGGCTGGGGGGGAGGGCGTGCGGCAGC
GGGCGGTGGGCGCGGTGGCTGGACCAGCCGCTGAGGCTGTACGAGTCCGC
CACTTTCAG ATCGGCT
GCGGGGCGGTCGTTGGGCGATGAAGTGCGGGGGCAGCAGGTGGACCAGCT
GCTGCGGCTGCGTAAGGTCGCCAAGCGCGG CGCATTCCTCGAGGTCCCGGGCTGCGCCACGGAAGCAGAGTTCCTGGAC
CAGGCCGTTAGCCTCGACCTCGGCGTGGAGCTCGGCGGCTGCGACAGGAA
CGACGGCGGCGCGGCGGCGGCGGCGCGCAGGGAGGGCATCGTCCTGCACG
TGGGCCTGCGCGGCACTGACGCCGCGGCCACCGCCGCCGCTGCGTCCGCC
ACTGCCGCTGCCGCCGGCGCGCTGGAGGCGGCGGCGCCGCCGGCGCGGCG
GAAGGCGCGCGTCTAG CGCCGGCGCCGCAGTACGGGCGCTGTGGTGGCAG
CGGCCACGGCGACAGCAGCTGTAGCTGCAGTACACGGCGTGCATGCATGC
GTATATGCATGTATGCCAGCGGCGGCGGCACTTGCAGCAGCGATGGGA back to top Coding sequence (CDS) from alignment at Contig_65:56407..61154+
>mRNA_12644 ID=mRNA_12644|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2097bp|location=Sequence derived from alignment at Contig_65:56407..61154+ (Tribonema minus UTEX_B_3156 ) back to top