mRNA_12644 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350510
Unique Name	mRNA_12644
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match: A0A835YLV5_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA)

HSP 1 Score: 1160 bits (3000), Expect = 0.000e+0
Identity = 670/670 (100.00%), Postives = 670/670 (100.00%), Query Frame = 2

Query:   50 MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAA 2059
            MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAA
Sbjct:    1 MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAA 670

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BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.640e-22
Identity = 81/240 (33.75%), Postives = 111/240 (46.25%), Query Frame = 2

Query:  908 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTP-SGAMRAAEVVELRIVLQNI--GVGARGTATAYLPRQP--LRVATRGSSDG 1612
            +++A VFG   +L +  FL   SLE A +  RDWR +C WDC W+  C +RWRL  + R  E W+                  P+   G       +     +   R   +  APP +W+ +Y  LHR++  P G  C S                  VIGR+   G  VW+AL RRSNGMT RSV+T  S  +R  EV+ELR V+Q +  G   R    A+  R+   LR   +  SDG
Sbjct:  199 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGT-----GKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPS----------------HMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEGPAVRVHPHAFKVRRVSGLRALLKDHSDG 400

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BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.890e-20
Identity = 71/212 (33.49%), Postives = 98/212 (46.23%), Query Frame = 2

Query:  908 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTP-SGAMRAAEVVELRIVLQNIGVG 1540
            +++A VFG   +L +  FL   SLE A +  R+WR +C WDC W+  C +RWRL  + R  E W+                  P+   G           +     R   +  APP +W+ +Y  LH ++  P G  C S                  VIGR+   G  VW+AL RRSNGMT RSV+T  S  +R  EV+ELR V+Q +  G
Sbjct:  344 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGK---------GKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPS----------------HMVIGRSVQEGVAVWIALTRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEG 513

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350510 vs. uniprot

BLAST of jgi.p|Trimin1|350510 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YLV5_9STRA	0.000e+0	100.00	BHLH domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A6H5JYB8_9PHAE	9.640e-22	33.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LR75_ECTSI	1.890e-20	33.49	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_65	contig	Contig_65:56407..61154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350510\|estExt_Genemark1.C_Ctg_650007
Hectar predicted targeting category	other localisation
TranscriptId	350832
Track	FilteredModels1
ProteinId	350510

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350510	gene_12644	Tribonema minus UTEX_B_3156	gene	Contig_65 56407..61154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350510	Trimin1\|350510\|estExt_Genemark1.C_Ctg_650007	Tribonema minus UTEX_B_3156	polypeptide	Contig_65 56456..61022 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12644_1	exon_12644_1	Tribonema minus UTEX_B_3156	exon	Contig_65 56407..57155 +
exon_12644_2	exon_12644_2	Tribonema minus UTEX_B_3156	exon	Contig_65 57483..57850 +
exon_12644_3	exon_12644_3	Tribonema minus UTEX_B_3156	exon	Contig_65 57974..58084 +
exon_12644_4	exon_12644_4	Tribonema minus UTEX_B_3156	exon	Contig_65 58282..58498 +
exon_12644_5	exon_12644_5	Tribonema minus UTEX_B_3156	exon	Contig_65 59467..59815 +
exon_12644_6	exon_12644_6	Tribonema minus UTEX_B_3156	exon	Contig_65 60050..60136 +
exon_12644_7	exon_12644_7	Tribonema minus UTEX_B_3156	exon	Contig_65 60758..61154 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_12644	UTR5_12644	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_65 56407..56455 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12644	CDS_12644	Tribonema minus UTEX_B_3156	CDS	Contig_65 56456..57155 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12644	UTR3_12644	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_65 61023..61154 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_65:56407..61154+
coding sequence from alignment at Contig_65:56407..61154+

spliced messenger RNA

>mRNA_12644 ID=mRNA_12644|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2278bp|location=Sequence derived from alignment at Contig_65:56407..61154+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGGGTGCAGTTGAGTGGAACTTCAGCAGTGGCTGTACTAGCAACAGCA
TGGACTCTCTCTCCACGGAAGCATTGTCGGGCCTGGACGAGGCCCTGCTG
GTACTCTTCGATCTGGAGCCGCCCTTGCACGGCGGCGGCTCCTGCGTATC
ATCCGACGGAGCGCCGTCCTTGCACGCCCAGGGCAAGGATGATTCTCCTG
CGTTGGCGGGCATGCCGGAGCCGACCGCGTTCCTGCTGCCTCAGCTTCAG
CAGCAGCTCGGTGGCGGCGGCGCTCCCGCCGTGGCCGCTCCCAAGAAGCC
CTCCACCATAAGCAGCGAGACCTATGAGAGGAAGAAGGGCAGGGCCAAGA
TGCTCAGGCAGGAAATCAGTGACAGGTTTGACGACCTGCAGGCGCTGCTG
CTGGAGGCGGGCTCCAGCGTCGACACCACCTTCATCCGCGAGAAGGGCGC
CAAGCGGTCCTCCATCCTCGATGCCGCCATAGCGGTCATCAGGTCTCTCT
CAGCCAGGGTGGCAGCCTGTGAACCGGGAGGCGACGCACCATCAGCTGCT
GCCGACGGCAAGGATTCAGCGGCGCCGGCGCCGGCGCCGCTGCAGTACGG
ATTTGCTGGGAGCGGACTTTCTCTGCGCTTGCCACTGCCACCGCTGGGGC
ATGCATCGGCGGGAGCGCTGGCTGCTGCTGCTGATCAGCTGGCGGCGGCG
CAGTCAAAGCAAGCACTTCCCCTGCCGCAGCAGCGCGTCGTCAGCGCAGC
CGTGACAGCTCCGCCAACCGCGACTGCCGCCACACCACCCGCCCCGGCCG
CGACGCCGCTGCTGCCGGCGCCGCCGCTGCTGCCACTAGCAACCGCGGCG
CCCAGGCGCGCCGCCATCGCCCACCTGCCGCTGCCGCCGCAGCAGCTCTC
GGCGGACTCAGCGGCGGCAGCGGTGTTCGGCGCGTCGTGCGCGCTGCCGA
TACACGCGTTCCTGGACGCGGCGTCGCTGGAGGCGGCGCGCCGCGCGTGC
CGCGACTGGCGCGCGCGCTGCGCGTGGGACTGCACGTGGGCGCGGCAGTG
CGCGGCGCGCTGGCGCCTGCGCGGCCAGGACCGCGCGCTCGAGGCGTGGC
AGGCGCGCTTCTCGCGGGTATCCAACGCGCAGCGGCTGCGCAGGCGGGAC
TGCGCACCTGAGACGCGGGCAGGCGCGCTGCTTCGCGCCGGCGAGCGCTG
CCACGCTCAGCTTGAGCAGTACTACCGCGACCCGGAGGCGCTCGCCGCGC
CGCCGGTGAGCTGGCGCGAGGTGTACTGCGCGCTGCACAGGGAGCTGCGC
CTGCCGGACGGCGCGCTGTGCGTGAGCGCCGCCGCCGCTGCCGCCGCCGC
GGCGCCGCACGCGCTTGGCCGCGGCGAGGACGTCATCGGGCGCGCGGCGG
GCGGCGGCGCGTGCGTCTGGGTGGCGCTGTGCCGCCGCAGCAACGGCATG
ACGGCGCGCTCCGTCGTGACGCCCAGCGGCGCCATGCGCGCGGCGGAGGT
CGTGGAGCTGCGCATCGTCCTGCAGAACATTGGCGTGGGCGCGCGCGGCA
CCGCCACGGCGTACCTCCCGCGCCAGCCGCTGCGCGTGGCGACGCGCGGC
AGCAGCGACGGCAGCAGCGGCGGCGGCAGCGGCGGCGGCGGCGCGTCCTC
CTTCTTCGTGGAGGCGATCGGGGACCCCAGGCTGTCCAGCCAGCTGGTGA
GGAAGGGTGGGCTGGGGGGGAGGGCGTGCGGCAGCGGGCGGTGGGCGCGG
TGGCTGGACCAGCCGCTGAGGCTGTACGAGTCCGCCACTTTCAGATCGGC
TGCGGGGCGGTCGTTGGGCGATGAAGTGCGGGGGCAGCAGGTGGACCAGC
TGCTGCGGCTGCGTAAGGTCGCCAAGCGCGGCGCATTCCTCGAGGTCCCG
GGCTGCGCCACGGAAGCAGAGTTCCTGGACCAGGCCGTTAGCCTCGACCT
CGGCGTGGAGCTCGGCGGCTGCGACAGGAACGACGGCGGCGCGGCGGCGG
CGGCGCGCAGGGAGGGCATCGTCCTGCACGTGGGCCTGCGCGGCACTGAC
GCCGCGGCCACCGCCGCCGCTGCGTCCGCCACTGCCGCTGCCGCCGGCGC
GCTGGAGGCGGCGGCGCCGCCGGCGCGGCGGAAGGCGCGCGTCTAGCGCC
GGCGCCGCAGTACGGGCGCTGTGGTGGCAGCGGCCACGGCGACAGCAGCT
GTAGCTGCAGTACACGGCGTGCATGCATGCGTATATGCATGTATGCCAGC
GGCGGCGGCACTTGCAGCAGCGATGGGA

protein sequence of jgi.p|Trimin1|350510

>Trimin1|350510|estExt_Genemark1.C_Ctg_650007 ID=Trimin1|350510|estExt_Genemark1.C_Ctg_650007|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=699bp
MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSP
ALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAK
MLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSL
SARVAACEPGGDAPSAAADGKDSAAPAPAPLQYGFAGSGLSLRLPLPPLG
HASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATAATPPAPA
ATPLLPAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALP
IHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAW
QARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAA
PPVSWREVYCALHRELRLPDGALCVSAAAAAAAAAPHALGRGEDVIGRAA
GGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARG
TATAYLPRQPLRVATRGSSDGSSGGGSGGGGASSFFVEAIGDPRLSSQLV
RKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQ
LLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAA
AARREGIVLHVGLRGTDAAATAAAASATAAAAGALEAAAPPARRKARV*

mRNA from alignment at Contig_65:56407..61154+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12644 ID=mRNA_12644|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4748bp|location=Sequence derived from alignment at Contig_65:56407..61154+ (Tribonema minus UTEX_B_3156 )
GGCGGGTGCAGTTGAGTGGAACTTCAGCAGTGGCTGTACTAGCAACAGCA
TGGACTCTCTCTCCACGGAAGCATTGTCGGGCCTGGACGAGGCCCTGCTG
GTACTCTTCGATCTGGAGCCGCCCTTGCACGGCGGCGGCTCCTGCGTATC
ATCCGACGGAGCGCCGTCCTTGCACGCCCAGGGCAAGGATGATTCTCCTG
CGTTGGCGGGCATGCCGGAGCCGACCGCGTTCCTGCTGCCTCAGCTTCAG
CAGCAGCTCGGTGGCGGCGGCGCTCCCGCCGTGGCCGCTCCCAAGAAGCC
CTCCACCATAAGCAGCGAGACCTATGAGAGGAAGAAGGGCAGGGCCAAGA
TGCTCAGGCAGGAAATCAGTGACAGGTTTGACGACCTGCAGGCGCTGCTG
CTGGAGGCGGGCTCCAGCGTCGACACCACCTTCATCCGCGAGAAGGGCGC
CAAGCGGTCCTCCATCCTCGATGCCGCCATAGCGGTCATCAGGTCTCTCT
CAGCCAGGGTGGCAGCCTGTGAACCGGGAGGCGACGCACCATCAGCTGCT
GCCGACGGCAAGGATTCAGCGGCGCCGGCGCCGGCGCCGCTGCAGTACGG
ATTTGCTGGGAGCGGACTTTCTCTGCGCTTGCCACTGCCACCGCTGGGGC
ATGCATCGGCGGGAGCGCTGGCTGCTGCTGCTGATCAGCTGGCGGCGGCG
CAGTCAAAGCAAGCACTTCCCCTGCCGCAGCAGCGCGTCGTCAGCGCAGG
TGAGCACAATAAGGCTTCCGGCTGGTGTGCCTGGGGCCAGCACGTGCCAT
TCCTTCTTTACTGAATGTCAATGAGTACGCAAGACAGAGCGCTAAAAAAC
AAAACCATCAGTCGATGCGTTCCGGCGTCAGCATGCTTCAATTTAAGCAC
GAGAAAGTTGTTGCAAGGACTCAGCAAGCCGGCCGTTACACCGCAAGACG
ACAACATCTTAATTGATCAACTGCGCCAGCTCAGCCGACTGCCGCATCGT
CACCGCACCTCCGTGTCATCAAGTGCGCAGCCCAGCCCATTCACAGTCAT
TTGCACTGAAATTCCCGCTTATGCAGCCGTGACAGCTCCGCCAACCGCGA
CTGCCGCCACACCACCCGCCCCGGCCGCGACGCCGCTGCTGCCGGCGCCG
CCGCTGCTGCCACTAGCAACCGCGGCGCCCAGGCGCGCCGCCATCGCCCA
CCTGCCGCTGCCGCCGCAGCAGCTCTCGGCGGACTCAGCGGCGGCAGCGG
TGTTCGGCGCGTCGTGCGCGCTGCCGATACACGCGTTCCTGGACGCGGCG
TCGCTGGAGGCGGCGCGCCGCGCGTGCCGCGACTGGCGCGCGCGCTGCGC
GTGGGACTGCACGTGGGCGCGGCAGTGCGCGGCGCGCTGGCGCCTGCGCG
GCCAGGACCGCGCGCTCGAGGCGTGGCAGGCGCGCTTCTCGCGGGTGAGC
GCTTGCGCTGCCGCTGCGCCGCCGCCGTGCCGCGCTGCTGCCGCAGTTTG
CTATAACTTGCTATTCTCTCCAGCAGGCGCTGTTTGTGTCCTGTGCGGCG
CATGTGATGTCAGTCAGGTATCCAACGCGCAGCGGCTGCGCAGGCGGGAC
TGCGCACCTGAGACGCGGGCAGGCGCGCTGCTTCGCGCCGGCGAGCGCTG
CCACGCTCAGCTTGAGCAGTACTACCGCGTCGCGTCAGCTCGCCTCACGA
GTTTTGACAGCTCTGTGCCGCTGTCGCTCTCACTACCCTGCGAGCACTTT
GCTCGCACACATGTGCCACAGTGTGCATGTCACCCGCAAGGAAGCGGGGT
CTGTTCCTAGAGCGCGTCAGACACCGACGCCACCCACACACACTAAACCG
GTTTCCGCGCGAACGCGCTTCGCAGGACCCGGAGGCGCTCGCCGCGCCGC
CGGTGAGCTGGCGCGAGGTGTACTGCGCGCTGCACAGGGAGCTGCGCCTG
CCGGACGGCGCGCTGTGCGTGAGCGCCGCCGCCGCTGCCGCCGCCGCGGC
GCCGCACGCGCTTGGCCGCGGCGAGGACGTCATCGGGCGCGCGGCGGGCG
GCGGCGCGTGCGTCTGGGTGGCGCTGTGCCGCCGCAGCAACGGTGAGGCG
CGCGGCCGTGGCGAACGGCAGCCTCTGCGCTGCTGCGCGCTGGGCTGGCA
TCGCTGTTGATGTTCAGCGCACAGCGAGCTTGGCTTGGTGTGTGTGCCGT
AGTGTGCTGTCGTCTGTGGCTCGCTGTCGTCTGTGGCTCGATGTGTGTTG
TGTCATCGTGGGCTTGGGAGCCTGCGCATTGCCGCTGCGGTGCGTCCCGT
ACGCTCGCCGCCAGCGCGGCGCGTGACGGGGGAGCTGGCTTGCGCATGTG
CGCAGCGGCACGCCGTGACGTTGGCGATGCCTACAGCGCCGCCCACTTTG
CCTTCTTGGCATACCCTCTGGAGCTGGCTGGCATGCCTCACCCCTGCCGC
ACCTGCACCGCCTCGACTGCACCCTTCTCTGACAAAGCCTTCATCAGTCT
CTTGTGCCCGCGCCCCCGCCACACAGTATTCACTGTTGGCGTGAATCTCC
AGACGACGCTATGCGCATGGCCACGCGCGCGTAGAGCTTTGCATCGTCGC
CCCCTTTAAGTTGCCAAGTTGCCCACCCTCGATTTCCCCCTGCACATGAT
CCGTGTGTGCTGCATGTCATTCCTGCGTGCCGAGTAAGCCGCGATCACTT
GCAGGCAATGACGGCGCCCTCAGCGACGACGCGCAGCACTGCCATGCGCT
TCGACACGCTCCCCGCAGTGTTACTATCGCACCAATGCATGCCCGCAAAC
CCTGTTCCCATTGCCGCGCGCTGCACGCTTTCTGAGCCGCCCGTACTGAG
TCGCCGCCGCGATTGCGCGCAGGCACTGCAGGGTGCCCCGCCTCGCCTGC
GCTTCTCCGCTGCTGATGCGCAGCCCCGTTGCGCATGCTGCCTGACATGC
GCATCGTGCCAAATGCATGCTCGTGACTCAACTGCAGTCGCCGCGCTCCG
CCCGCCAGCTGAGCTGTGCTGCCTCTCCACCGCGCGCCCTCCGTTCGTCC
ACGCACGCAGGCATGACGGCGCGCTCCGTCGTGACGCCCAGCGGCGCCAT
GCGCGCGGCGGAGGTCGTGGAGCTGCGCATCGTCCTGCAGAACATTGGCG
TGGGCGCGCGCGGCACCGCCACGGCGTACCTCCCGCGCCAGCCGCTGCGC
GTGGCGACGCGCGGCAGCAGCGACGGCAGCAGCGGCGGCGGCAGCGGCGG
CGGCGGCGCGTCCTCCTTCTTCGTGGAGGCGATCGGGGACCCCAGGCTGT
CCAGCCAGCTGGTGAGGAAGGGTGGGCTGGGGGGGAGGGCGTGCGGCAGC
GGGCGGTGGGCGCGGTGGCTGGACCAGCCGCTGAGGCTGTACGAGTCCGC
CACTTTCAGGTGAGGACTTGAAGTTTGGTCCGCGCCGTGATTGTGGTGCA
GCGCGCGCTGTTGCGGTGCGCTTGAGTGCGATACAATGCCGGCAGGTGTG
AGAGGGGGGTATATGCGATCATCAAGCAGTTGGCGCGGCAGCTGGACCAG
TTGCTGGGGTTGGTTCAGTCCCAGGTGAAGACTTGAAGTACGGGACGCCA
CTTGCACGCCAGCGTGTGATAAGCAACGTACCTTGCGGGGGAGATCGGCT
GCGGGGCGGTCGTTGGGCGATGAAGTGCGGGGGCAGCAGGTGGACCAGCT
GCTGCGGCTGCGTAAGGTCGCCAAGCGCGGGTGGGCCACAAACTGAATTG
GGCCACACCGCACAATAGTCCCCTACCAGATTGCTGCTTGGCGCACCCAG
TCGGCGACGACTGGGGCGGCGCATGCAGCTTGTGCTCAGCCGTCAGCTGC
TTTCGGCCAGGTTGTCCAGACTGGTGCGGTGGTCAGACGACGAGTCGGTG
TCATGAATCGCTTGTTGTGCACAGTTGAAGTAAGGATTTCAGCCCTTTTC
TGGCGCACGAGGCGGGCAGTACTGCTCAATGCTTAGGCATACAGGGACTT
GTGCACGGCAGACGACCACTGCAGTCCTGCTTGCCGCACAGGGACTGGTG
CACGGCAAGCGGCCGCTGCAGTCCCGCTTGCCGCTTCAGCGCCTACGCTC
TTGATCAGCTGCGACCGAGTGCTCCATCAGCGCCGGACGCCGTGTGCTTA
GTCACCTGGATGTGGTGGGCGCCTGCACGCTGCGCAAACCGCATCCCCGC
GTGCTCACACGCCGTTCTCCGCGGCACCGCCTCTCACCGTGCTGCCGCCA
CCGCATGGAGGCGCAGCAGTGGCGCAGCGGCAGTGCGTCACGCCGCAGAG
CGCGAGCTCAACTCTCGTCGTCTCCGCTCTTCAACTCCTCCGCCTGCGCA
GCGCATTCCTCGAGGTCCCGGGCTGCGCCACGGAAGCAGAGTTCCTGGAC
CAGGCCGTTAGCCTCGACCTCGGCGTGGAGCTCGGCGGCTGCGACAGGAA
CGACGGCGGCGCGGCGGCGGCGGCGCGCAGGGAGGGCATCGTCCTGCACG
TGGGCCTGCGCGGCACTGACGCCGCGGCCACCGCCGCCGCTGCGTCCGCC
ACTGCCGCTGCCGCCGGCGCGCTGGAGGCGGCGGCGCCGCCGGCGCGGCG
GAAGGCGCGCGTCTAGCGCCGGCGCCGCAGTACGGGCGCTGTGGTGGCAG
CGGCCACGGCGACAGCAGCTGTAGCTGCAGTACACGGCGTGCATGCATGC
GTATATGCATGTATGCCAGCGGCGGCGGCACTTGCAGCAGCGATGGGA

Coding sequence (CDS) from alignment at Contig_65:56407..61154+

>mRNA_12644 ID=mRNA_12644|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2097bp|location=Sequence derived from alignment at Contig_65:56407..61154+ (Tribonema minus UTEX_B_3156 )
ATGGACTCTCTCTCCACGGAAGCATTGTCGGGCCTGGACGAGGCCCTGCT
GGTACTCTTCGATCTGGAGCCGCCCTTGCACGGCGGCGGCTCCTGCGTAT
CATCCGACGGAGCGCCGTCCTTGCACGCCCAGGGCAAGGATGATTCTCCT
GCGTTGGCGGGCATGCCGGAGCCGACCGCGTTCCTGCTGCCTCAGCTTCA
GCAGCAGCTCGGTGGCGGCGGCGCTCCCGCCGTGGCCGCTCCCAAGAAGC
CCTCCACCATAAGCAGCGAGACCTATGAGAGGAAGAAGGGCAGGGCCAAG
ATGCTCAGGCAGGAAATCAGTGACAGGTTTGACGACCTGCAGGCGCTGCT
GCTGGAGGCGGGCTCCAGCGTCGACACCACCTTCATCCGCGAGAAGGGCG
CCAAGCGGTCCTCCATCCTCGATGCCGCCATAGCGGTCATCAGGTCTCTC
TCAGCCAGGGTGGCAGCCTGTGAACCGGGAGGCGACGCACCATCAGCTGC
TGCCGACGGCAAGGATTCAGCGGCGCCGGCGCCGGCGCCGCTGCAGTACG
GATTTGCTGGGAGCGGACTTTCTCTGCGCTTGCCACTGCCACCGCTGGGG
CATGCATCGGCGGGAGCGCTGGCTGCTGCTGCTGATCAGCTGGCGGCGGC
GCAGTCAAAGCAAGCACTTCCCCTGCCGCAGCAGCGCGTCGTCAGCGCAG
CCGTGACAGCTCCGCCAACCGCGACTGCCGCCACACCACCCGCCCCGGCC
GCGACGCCGCTGCTGCCGGCGCCGCCGCTGCTGCCACTAGCAACCGCGGC
GCCCAGGCGCGCCGCCATCGCCCACCTGCCGCTGCCGCCGCAGCAGCTCT
CGGCGGACTCAGCGGCGGCAGCGGTGTTCGGCGCGTCGTGCGCGCTGCCG
ATACACGCGTTCCTGGACGCGGCGTCGCTGGAGGCGGCGCGCCGCGCGTG
CCGCGACTGGCGCGCGCGCTGCGCGTGGGACTGCACGTGGGCGCGGCAGT
GCGCGGCGCGCTGGCGCCTGCGCGGCCAGGACCGCGCGCTCGAGGCGTGG
CAGGCGCGCTTCTCGCGGGTATCCAACGCGCAGCGGCTGCGCAGGCGGGA
CTGCGCACCTGAGACGCGGGCAGGCGCGCTGCTTCGCGCCGGCGAGCGCT
GCCACGCTCAGCTTGAGCAGTACTACCGCGACCCGGAGGCGCTCGCCGCG
CCGCCGGTGAGCTGGCGCGAGGTGTACTGCGCGCTGCACAGGGAGCTGCG
CCTGCCGGACGGCGCGCTGTGCGTGAGCGCCGCCGCCGCTGCCGCCGCCG
CGGCGCCGCACGCGCTTGGCCGCGGCGAGGACGTCATCGGGCGCGCGGCG
GGCGGCGGCGCGTGCGTCTGGGTGGCGCTGTGCCGCCGCAGCAACGGCAT
GACGGCGCGCTCCGTCGTGACGCCCAGCGGCGCCATGCGCGCGGCGGAGG
TCGTGGAGCTGCGCATCGTCCTGCAGAACATTGGCGTGGGCGCGCGCGGC
ACCGCCACGGCGTACCTCCCGCGCCAGCCGCTGCGCGTGGCGACGCGCGG
CAGCAGCGACGGCAGCAGCGGCGGCGGCAGCGGCGGCGGCGGCGCGTCCT
CCTTCTTCGTGGAGGCGATCGGGGACCCCAGGCTGTCCAGCCAGCTGGTG
AGGAAGGGTGGGCTGGGGGGGAGGGCGTGCGGCAGCGGGCGGTGGGCGCG
GTGGCTGGACCAGCCGCTGAGGCTGTACGAGTCCGCCACTTTCAGATCGG
CTGCGGGGCGGTCGTTGGGCGATGAAGTGCGGGGGCAGCAGGTGGACCAG
CTGCTGCGGCTGCGTAAGGTCGCCAAGCGCGGCGCATTCCTCGAGGTCCC
GGGCTGCGCCACGGAAGCAGAGTTCCTGGACCAGGCCGTTAGCCTCGACC
TCGGCGTGGAGCTCGGCGGCTGCGACAGGAACGACGGCGGCGCGGCGGCG
GCGGCGCGCAGGGAGGGCATCGTCCTGCACGTGGGCCTGCGCGGCACTGA
CGCCGCGGCCACCGCCGCCGCTGCGTCCGCCACTGCCGCTGCCGCCGGCG
CGCTGGAGGCGGCGGCGCCGCCGGCGCGGCGGAAGGCGCGCGTCTAG