Trimin1|350510|estExt_Genemark1.C_Ctg_650007 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350510
Unique Name	Trimin1\|350510\|estExt_Genemark1.C_Ctg_650007
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	699

Homology

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BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match: A0A835YLV5_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA)

HSP 1 Score: 1177 bits (3044), Expect = 0.000e+0
Identity = 698/698 (100.00%), Postives = 698/698 (100.00%), Query Frame = 0

Query:    1 MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAATAAXXXXXXXXXXXXXXXAPPARRKARV 698
            MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAATAAXXXXXXXXXXXXXXXAPPARRKARV
Sbjct:    1 MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSPALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAKMLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSLSARVAACEPGGDAPSAAADGKDSAAPXXXXXXXXXXXXXXXXXXXXPPLGHASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATXXXXXXXXXXXXXXAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARGTATAYLPRQPLRVATRGSSDGXXXXXXXXXXASSFFVEAIGDPRLSSQLVRKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQLLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAAAARREGIVLHVGLRGTDAAATAAXXXXXXXXXXXXXXXAPPARRKARV 698

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BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 7.940e-22
Identity = 81/240 (33.75%), Postives = 111/240 (46.25%), Query Frame = 0

Query:  287 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTP-SGAMRAAEVVELRIVLQNI--GVGARGTATAYLPRQP--LRVATRGSSDG 521
            +++A VFG   +L +  FL   SLE A +  RDWR +C WDC W+  C +RWRL  + R  E W+                  P+   G       +     +   R   +  APP +W+ +Y  LHR++  P G  C S                  VIGR+   G  VW+AL RRSNGMT RSV+T  S  +R  EV+ELR V+Q +  G   R    A+  R+   LR   +  SDG
Sbjct:  199 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGT-----GKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPS----------------HMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEGPAVRVHPHAFKVRRVSGLRALLKDHSDG 400

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BLAST of jgi.p|Trimin1|350510 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.530e-20
Identity = 71/212 (33.49%), Postives = 98/212 (46.23%), Query Frame = 0

Query:  287 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVTP-SGAMRAAEVVELRIVLQNIGVG 497
            +++A VFG   +L +  FL   SLE A +  R+WR +C WDC W+  C +RWRL  + R  E W+                  P+   G           +     R   +  APP +W+ +Y  LH ++  P G  C S                  VIGR+   G  VW+AL RRSNGMT RSV+T  S  +R  EV+ELR V+Q +  G
Sbjct:  344 ASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGK---------GKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPS----------------HMVIGRSVQEGVAVWIALTRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEG 513

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350510 vs. uniprot

BLAST of jgi.p|Trimin1|350510 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835YLV5_9STRA	0.000e+0	100.00	BHLH domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A6H5JYB8_9PHAE	7.940e-22	33.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LR75_ECTSI	1.530e-20	33.49	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..57
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 90..150 score: 8.790841
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 300..415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_65	contig	Contig_65:56456..61022 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350510	mRNA_12644	Tribonema minus UTEX_B_3156	mRNA	Contig_65 56407..61154 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350510|estExt_Genemark1.C_Ctg_650007 ID=Trimin1|350510|estExt_Genemark1.C_Ctg_650007|Name=jgi.p|Trimin1|350510|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=699bp
MDSLSTEALSGLDEALLVLFDLEPPLHGGGSCVSSDGAPSLHAQGKDDSP
ALAGMPEPTAFLLPQLQQQLGGGGAPAVAAPKKPSTISSETYERKKGRAK
MLRQEISDRFDDLQALLLEAGSSVDTTFIREKGAKRSSILDAAIAVIRSL
SARVAACEPGGDAPSAAADGKDSAAPAPAPLQYGFAGSGLSLRLPLPPLG
HASAGALAAAADQLAAAQSKQALPLPQQRVVSAAVTAPPTATAATPPAPA
ATPLLPAPPLLPLATAAPRRAAIAHLPLPPQQLSADSAAAAVFGASCALP
IHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAW
QARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAA
PPVSWREVYCALHRELRLPDGALCVSAAAAAAAAAPHALGRGEDVIGRAA
GGGACVWVALCRRSNGMTARSVVTPSGAMRAAEVVELRIVLQNIGVGARG
TATAYLPRQPLRVATRGSSDGSSGGGSGGGGASSFFVEAIGDPRLSSQLV
RKGGLGGRACGSGRWARWLDQPLRLYESATFRSAAGRSLGDEVRGQQVDQ
LLRLRKVAKRGAFLEVPGCATEAEFLDQAVSLDLGVELGGCDRNDGGAAA
AARREGIVLHVGLRGTDAAATAAAASATAAAAGALEAAAPPARRKARV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR036047	F-box-like_dom_sf