mRNA_6000 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A836CFU4_9STRA (Proton_antipo_M domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU4_9STRA) HSP 1 Score: 326 bits (835), Expect = 1.210e-110 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 2
Query: 35 MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFLMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEYYVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEAGLKYFLLGAISSALLLFGASFFIFI 559
MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFLMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEYYVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEAGLKYFLLGAISSALLLFGASFFIFI
Sbjct: 1 MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFLMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEYYVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEAGLKYFLLGAISSALLLFGASFFIFI 175
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A836CE11_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE11_9STRA) HSP 1 Score: 197 bits (502), Expect = 3.040e-61 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = -3
Query: 578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS
Sbjct: 3 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: Q9MG87_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Synura synuroidea TaxID=47573 RepID=Q9MG87_9STRA) HSP 1 Score: 164 bits (416), Expect = 5.710e-46 Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = -3
Query: 578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
AVIFTSLQ FEY T+SF++SDG+YGS FY+ATGFHGFHV +GT F+ VC +R+Y+NHF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct: 176 AVIFTSLQAFEYVTSSFTISDGVYGSTFYMATGFHGFHVFVGTCFLIVCLIRVYLNHFTREHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 267
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI) HSP 1 Score: 162 bits (411), Expect = 3.650e-45 Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = -3
Query: 581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
A+ FT++Q FEY A FSMSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C++RL++ HFSR HHFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct: 177 AIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: G1UD76_CUTMU (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Cutleria TaxID=74474 RepID=G1UD76_CUTMU) HSP 1 Score: 160 bits (404), Expect = 7.820e-45 Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = -3
Query: 581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
AV FT++Q FEY A F MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct: 119 AVAFTAMQGFEYMNAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 209
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A348AYQ7_9EUKA (Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina amphinema TaxID=2108040 RepID=A0A348AYQ7_9EUKA) HSP 1 Score: 161 bits (408), Expect = 8.220e-45 Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = -3
Query: 578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
A+IFT+LQVFEY TASF +SDGIYGS FY++TGFHGFHV+IGT F+ VC LR NHF+ HHFGFEAAAWYWHFVDVVWLFLF C+YWWG+
Sbjct: 172 AIIFTALQVFEYNTASFDISDGIYGSTFYMSTGFHGFHVLIGTSFLAVCLLRQLKNHFTTDHHFGFEAAAWYWHFVDVVWLFLFTCVYWWGN 263
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE) HSP 1 Score: 161 bits (407), Expect = 1.440e-44 Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = -3
Query: 581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
AV FT+LQ FEY A F+MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct: 177 AVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWG 267
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: D2Z239_HETAK (Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z239_HETAK) HSP 1 Score: 159 bits (401), Expect = 1.100e-43 Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = -3
Query: 578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
AV+FT+LQ FEY TA FS++D +YGS FY+ TGFHGFHV IGT F+ VC++RLY++HF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct: 180 AVVFTALQGFEYLTAPFSIADSVYGSTFYLTTGFHGFHVFIGTCFLTVCTVRLYLHHFTRQHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 271
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A2P1G7I4_9CHLO (Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca zopfii TaxID=3112 RepID=A0A2P1G7I4_9CHLO) HSP 1 Score: 158 bits (399), Expect = 1.960e-43 Identity = 65/92 (70.65%), Postives = 81/92 (88.04%), Query Frame = -3
Query: 578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
AVIFT Q +EY A FS++DGIYGS F+++TGFHGFHVIIGT+F+ +C++R+Y+NHFS GHHFGFEAAAWYWH VDVVWLFLF+C+Y+WG
Sbjct: 175 AVIFTGFQAYEYIEAPFSIADGIYGSTFFLSTGFHGFHVIIGTIFLAICAVRVYLNHFSSGHHFGFEAAAWYWHMVDVVWLFLFICVYYWGG 266
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI) HSP 1 Score: 158 bits (399), Expect = 2.240e-43 Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = -3
Query: 581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
A+ FT++Q FEY A F MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C++RLY++HFS HHFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct: 177 AIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6000 ID=mRNA_6000|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_33:882991..883845+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACTAAGACCATCGAAAATACGCAGAAAATAAAAAATGACATATATATTTCback to top protein sequence of jgi.p|Trimin1|59362 >Trimin1|59362|CE59361_31485 ID=Trimin1|59362|CE59361_31485|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFback to top mRNA from alignment at Contig_33:882991..883845+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_33:882991..883845+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_33:882991..883845+ >mRNA_6000 ID=mRNA_6000|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_33:882991..883845+ (Tribonema minus UTEX_B_3156 )back to top |