mRNA_6000 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|59362
Unique NamemRNA_6000
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A836CFU4_9STRA (Proton_antipo_M domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU4_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.210e-110
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 2
Query:   35 MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFLMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEYYVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEAGLKYFLLGAISSALLLFGASFFIFI 559
            MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFLMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEYYVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEAGLKYFLLGAISSALLLFGASFFIFI
Sbjct:    1 MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIFLMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEYYVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEAGLKYFLLGAISSALLLFGASFFIFI 175          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A836CE11_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE11_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.040e-61
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = -3
Query:  578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
            AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS
Sbjct:    3 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 94          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: Q9MG87_9STRA (Cytochrome c oxidase subunit 3 n=1 Tax=Synura synuroidea TaxID=47573 RepID=Q9MG87_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.710e-46
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = -3
Query:  578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
            AVIFTSLQ FEY T+SF++SDG+YGS FY+ATGFHGFHV +GT F+ VC +R+Y+NHF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  176 AVIFTSLQAFEYVTSSFTISDGVYGSTFYMATGFHGFHVFVGTCFLIVCLIRVYLNHFTREHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 267          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: E6ZES3_ECTSI (Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.650e-45
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = -3
Query:  581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
            A+ FT++Q FEY  A FSMSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C++RL++ HFSR HHFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AIAFTAMQGFEYSAAPFSMSDGVYGSVFYMATGFHGFHVIIGTIFLSICTIRLFLGHFSRQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: G1UD76_CUTMU (Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=Cutleria TaxID=74474 RepID=G1UD76_CUTMU)

HSP 1 Score: 160 bits (404), Expect = 7.820e-45
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = -3
Query:  581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
            AV FT++Q FEY  A F MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR  HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  119 AVAFTAMQGFEYMNAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 209          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A348AYQ7_9EUKA (Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina amphinema TaxID=2108040 RepID=A0A348AYQ7_9EUKA)

HSP 1 Score: 161 bits (408), Expect = 8.220e-45
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = -3
Query:  578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
            A+IFT+LQVFEY TASF +SDGIYGS FY++TGFHGFHV+IGT F+ VC LR   NHF+  HHFGFEAAAWYWHFVDVVWLFLF C+YWWG+
Sbjct:  172 AIIFTALQVFEYNTASFDISDGIYGSTFYMSTGFHGFHVLIGTSFLAVCLLRQLKNHFTTDHHFGFEAAAWYWHFVDVVWLFLFTCVYWWGN 263          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: Q2TUF2_9PHAE (Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUF2_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.440e-44
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = -3
Query:  581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
            AV FT+LQ FEY  A F+MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C+LRLY +HFSR  HFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AVAFTALQGFEYMHAPFAMSDGVYGSVFYMATGFHGFHVIIGTIFLAICTLRLYFHHFSRQRHFGFEAAAWYWHFVDVVWLFLFITIYWWG 267          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: D2Z239_HETAK (Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z239_HETAK)

HSP 1 Score: 159 bits (401), Expect = 1.100e-43
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = -3
Query:  578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
            AV+FT+LQ FEY TA FS++D +YGS FY+ TGFHGFHV IGT F+ VC++RLY++HF+R HHFGFEAAAWYWHFVDVVWLFLF+ IYWWGS
Sbjct:  180 AVVFTALQGFEYLTAPFSIADSVYGSTFYLTTGFHGFHVFIGTCFLTVCTVRLYLHHFTRQHHFGFEAAAWYWHFVDVVWLFLFITIYWWGS 271          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: A0A2P1G7I4_9CHLO (Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca zopfii TaxID=3112 RepID=A0A2P1G7I4_9CHLO)

HSP 1 Score: 158 bits (399), Expect = 1.960e-43
Identity = 65/92 (70.65%), Postives = 81/92 (88.04%), Query Frame = -3
Query:  578 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWGS 853
            AVIFT  Q +EY  A FS++DGIYGS F+++TGFHGFHVIIGT+F+ +C++R+Y+NHFS GHHFGFEAAAWYWH VDVVWLFLF+C+Y+WG 
Sbjct:  175 AVIFTGFQAYEYIEAPFSIADGIYGSTFFLSTGFHGFHVIIGTIFLAICAVRVYLNHFSSGHHFGFEAAAWYWHMVDVVWLFLFICVYYWGG 266          
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Match: COX3_PYLLI (Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyceae TaxID=2870 RepID=COX3_PYLLI)

HSP 1 Score: 158 bits (399), Expect = 2.240e-43
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = -3
Query:  581 AVIFTSLQVFEYKTASFSMSDGIYGSVFYIATGFHGFHVIIGTLFIGVCSLRLYINHFSRGHHFGFEAAAWYWHFVDVVWLFLFVCIYWWG 853
            A+ FT++Q FEY  A F MSDG+YGSVFY+ATGFHGFHVIIGT+F+ +C++RLY++HFS  HHFGFEAAAWYWHFVDVVWLFLF+ IYWWG
Sbjct:  177 AIAFTAMQGFEYSGAPFGMSDGVYGSVFYMATGFHGFHVIIGTIFLFICTIRLYLSHFSCQHHFGFEAAAWYWHFVDVVWLFLFLTIYWWG 267          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|59362 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFU4_9STRA1.210e-110100.00Proton_antipo_M domain-containing protein n=1 Tax=... [more]
A0A836CE11_9STRA3.040e-61100.00Cytochrome c oxidase subunit 3 n=1 Tax=Tribonema m... [more]
Q9MG87_9STRA5.710e-4677.17Cytochrome c oxidase subunit 3 n=1 Tax=Synura synu... [more]
E6ZES3_ECTSI3.650e-4575.82Cytochrome c oxidase subunit 3 n=154 Tax=Phaeophyc... [more]
G1UD76_CUTMU7.820e-4576.92Cytochrome c oxidase subunit 3 (Fragment) n=4 Tax=... [more]
A0A348AYQ7_9EUKA8.220e-4576.09Cytochrome c oxidase subunit 3 n=1 Tax=Ophirina am... [more]
Q2TUF2_9PHAE1.440e-4478.02Cytochrome c oxidase subunit 3 n=14 Tax=Phaeophyce... [more]
D2Z239_HETAK1.100e-4373.91Cytochrome c oxidase subunit 3 n=4 Tax=Heterosigma... [more]
A0A2P1G7I4_9CHLO1.960e-4370.65Cytochrome c oxidase subunit 3 n=2 Tax=Prototheca ... [more]
COX3_PYLLI2.240e-4374.73Cytochrome c oxidase subunit 3 n=161 Tax=Phaeophyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_33contigContig_33:882991..883845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|59362|CE59361_31485
KEGG TC3.D.1.6
BRITEko00000,ko00001,ko00002,ko01000,ko03029
KEGG rclassRC00061
KEGG ReactionR11945
KEGG ModuleM00142
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG koko:K03879
EC1.6.5.3
DescriptionProton-conducting membrane transporter
COG categoryC
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG1007@1|root,KOG4668@2759|Eukaryota,38434@33090|Viridiplantae,34N0D@3041|Chlorophyta
Evalue2.85e-20
Seed ortholog70448.Q0P3F7
Hectar predicted targeting categorysignal peptide
TranscriptId59684
TrackFilteredModels1
ProteinId59362
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|59362gene_6000Tribonema minus UTEX_B_3156 geneContig_33 882991..883845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6000_1exon_6000_1Tribonema minus UTEX_B_3156 exonContig_33 882991..883845 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6000UTR5_6000Tribonema minus UTEX_B_3156 five_prime_UTRContig_33 882991..883024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6000CDS_6000Tribonema minus UTEX_B_3156 CDSContig_33 883025..883552 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6000UTR3_6000Tribonema minus UTEX_B_3156 three_prime_UTRContig_33 883553..883845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|59362Trimin1|59362|CE59361_31485Tribonema minus UTEX_B_3156 polypeptideContig_33 883025..883552 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_33:882991..883845+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACTAAGACCATCGAAAATACGCAGAAAATAAAAAATGACATATATATTTC
CAGAAATTTTTTTAGGATCATCTTTACTATTACTTTTAATAGGTGGTAGT
ATTTTAGGATCATCGCCAAAATACAATTACCCAATTATTTGTTTTCACTC
TTTGACATGTTTAATTTTAATATGGGTAATCTTTTTAATGAACGCTGACA
TTGACAATTCTAAAATAATTACTAATTATTTTATTGTAGACACTTTAAGC
AACAACGCTAAAATTATAATGAGTATTGGACTTTTGGCTTGTTTATGTAT
TGGAAAAAATAAAAAAATAAAAATTTTTGAGTATTATGTTTTAATTTTAC
TTGGATTTTTAGGTTTATGCTTTTTAACAATATCATATGACATAATATCA
GTTTATTTGTCTTTAGAACTTATAACATTATCATTCTACATTTTAGCGAC
TTTCCAAAGATCATCTGTATTTTCAACTGAAGCAGGCTTAAAATATTTTC
TTTTAGGTGCGATCTCTTCAGCTTTATTGTTGTTTGGGGCCAGTTTTTTT
ATATTTATTTAAAATGATTTATTATTAAGATCCCCACCAGTAAATACAAA
CAAAAAGGAATAACCATACCACATCAACAAAATGCCAATACCAAGCAGCA
GCTTCAAAGCCAAAATGATGACCACGACTGAAATGATTTATATACAAGCG
TAAAGAACACACACCAATAAAAAGTGTACCAATAATAACATGAAATCCAT
GGAACCCTGTTGCTATATAAAAAACAGAACCGTAAATCCCATCAGACATG
CTAAAACTTGCTGTTTTGTATTCAAATACTTGTAAACTTGTAAAAATTAC
TGCTA
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protein sequence of jgi.p|Trimin1|59362

>Trimin1|59362|CE59361_31485 ID=Trimin1|59362|CE59361_31485|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=176bp
MTYIFPEIFLGSSLLLLLIGGSILGSSPKYNYPIICFHSLTCLILIWVIF
LMNADIDNSKIITNYFIVDTLSNNAKIIMSIGLLACLCIGKNKKIKIFEY
YVLILLGFLGLCFLTISYDIISVYLSLELITLSFYILATFQRSSVFSTEA
GLKYFLLGAISSALLLFGASFFIFI*
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mRNA from alignment at Contig_33:882991..883845+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_33:882991..883845+ (Tribonema minus UTEX_B_3156 )
ACTAAGACCATCGAAAATACGCAGAAAATAAAAAATGACATATATATTTC CAGAAATTTTTTTAGGATCATCTTTACTATTACTTTTAATAGGTGGTAGT ATTTTAGGATCATCGCCAAAATACAATTACCCAATTATTTGTTTTCACTC TTTGACATGTTTAATTTTAATATGGGTAATCTTTTTAATGAACGCTGACA TTGACAATTCTAAAATAATTACTAATTATTTTATTGTAGACACTTTAAGC AACAACGCTAAAATTATAATGAGTATTGGACTTTTGGCTTGTTTATGTAT TGGAAAAAATAAAAAAATAAAAATTTTTGAGTATTATGTTTTAATTTTAC TTGGATTTTTAGGTTTATGCTTTTTAACAATATCATATGACATAATATCA GTTTATTTGTCTTTAGAACTTATAACATTATCATTCTACATTTTAGCGAC TTTCCAAAGATCATCTGTATTTTCAACTGAAGCAGGCTTAAAATATTTTC TTTTAGGTGCGATCTCTTCAGCTTTATTGTTGTTTGGGGCCAGTTTTTTT ATATTTATTTAAAATGATTTATTATTAAGATCCCCACCAGTAAATACAAA CAAAAAGGAATAACCATACCACATCAACAAAATGCCAATACCAAGCAGCA GCTTCAAAGCCAAAATGATGACCACGACTGAAATGATTTATATACAAGCG TAAAGAACACACACCAATAAAAAGTGTACCAATAATAACATGAAATCCAT GGAACCCTGTTGCTATATAAAAAACAGAACCGTAAATCCCATCAGACATG CTAAAACTTGCTGTTTTGTATTCAAATACTTGTAAACTTGTAAAAATTAC TGCTA
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Coding sequence (CDS) from alignment at Contig_33:882991..883845+

>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Trimin1|59362|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=528bp|location=Sequence derived from alignment at Contig_33:882991..883845+ (Tribonema minus UTEX_B_3156 )
ATGACATATATATTTCCAGAAATTTTTTTAGGATCATCTTTACTATTACT
TTTAATAGGTGGTAGTATTTTAGGATCATCGCCAAAATACAATTACCCAA
TTATTTGTTTTCACTCTTTGACATGTTTAATTTTAATATGGGTAATCTTT
TTAATGAACGCTGACATTGACAATTCTAAAATAATTACTAATTATTTTAT
TGTAGACACTTTAAGCAACAACGCTAAAATTATAATGAGTATTGGACTTT
TGGCTTGTTTATGTATTGGAAAAAATAAAAAAATAAAAATTTTTGAGTAT
TATGTTTTAATTTTACTTGGATTTTTAGGTTTATGCTTTTTAACAATATC
ATATGACATAATATCAGTTTATTTGTCTTTAGAACTTATAACATTATCAT
TCTACATTTTAGCGACTTTCCAAAGATCATCTGTATTTTCAACTGAAGCA
GGCTTAAAATATTTTCTTTTAGGTGCGATCTCTTCAGCTTTATTGTTGTT
TGGGGCCAGTTTTTTTATATTTATTTAA
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