Homology
BLAST of jgi.p|Trimin1|354334 vs. uniprot
Match: A0A835YZS9_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS9_9STRA) HSP 1 Score: 227 bits (578), Expect = 1.040e-71 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 3 Query: 24 MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG 695
MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG
Sbjct: 1 MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG 224
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|354334|estExt_Genemark1.C_Ctg_2310018 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 354656 |
| Track | FilteredModels1 |
| ProteinId | 354334 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18127 ID=mRNA_18127|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=698bp|location=Sequence derived from alignment at Contig_231:159542..164280+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GTGGAGCGGTAGCGCGGTCCGCTATGGGTGCGCAGCAGCAGAAGGGCCCC
GTCAAGAGCAGCAGGCAACGAGGGAGCAGGACAGCTTGCGACAGTTGCGC
GACGCGCAAGCGCCGCTGCGATGGCGACGGCACCAACGCCTGCAGCCTGT
GCGCGCGGCGCCGCCGGCCGTGCGTCTACAGCAAGCGCCGCCGCTCGTGC
GTCTACAGCAAGAGACCGTATGCAAAAACGGCTGCGGCGGCGGCGGCGGC
GGCGGCAGCTGCTGCAGCGCCACTGTCCGCAGCAAGTTCAACAGTGACCT
CCGCCGCATCTTCAACAACATCGTCGCCGCCCATGACGCCGCCGGCGGGC
TCGCCGCATTCGCCGCCGCCTGAGGAGCCGCCGCAGCAGCAGCAGCAGCC
GCGGCGGCAGCTGCGGCGGCGGCGCGCGAGCGGCGGCGCAACGGCGGCGG
AGGCGCCGGCGGCAGCGGCGCAGATCGTGGCGCGCCTGCCGCGCGGCCAC
ATCTCCCGCTCCCCCGCGACAGGTTCGTCACTATGGCGGCTGCGGCAGCG
GCAGCCTGCGCGCGGGGCCAGCGGCCAGGACGGAGCGCGCATTGCGCATC
TGCTGCCGTCACGCCTGCCCGCACGCATCGTTGCTGGTCCGATGCGGCGG
CACCGCGAGCGCATGTGGCAGGTTTCCGCAGCGCGCCTGCGCGGCTAG back to topprotein sequence of jgi.p|Trimin1|354334 >Trimin1|354334|estExt_Genemark1.C_Ctg_2310018 ID=Trimin1|354334|estExt_Genemark1.C_Ctg_2310018|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACSLCARRRRPC
VYSKRRRSCVYSKRPYAKTAAAAAAAAAAAAAPLSAASSTVTSAASSTTS
SPPMTPPAGSPHSPPPEEPPQQQQQPRRQLRRRRASGGATAAEAPAAAAQ
IVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPA
RIVAGPMRRHRERMWQVSAARLRG* back to topmRNA from alignment at Contig_231:159542..164280+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_18127 ID=mRNA_18127|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4739bp|location=Sequence derived from alignment at Contig_231:159542..164280+ (Tribonema minus UTEX_B_3156 )
GTGGAGCGGTAGCGCGGTCCGCTATGGGTGCGCAGCAGCAGAAGGGCCCC
GTCAAGAGCAGCAGGCAACGAGGGAGCAGGACAGCTTGCGACAGGTGCGA
ACCATCCGATGCTGGACCTGCGTGATTCAACACTTTCGATCTCAAACCAT
GCCTTGGAAAGTGCGGAGAGCGAAAGCGACAGCAGTCCATGGAACTATCT
TGGTGTGCCGGTGTGCTGCCGGTCTTGAAGCTCTCGTCTCAGCTTTCTGC
AATGCCGGCAATACTTCGATTTTGAAATTGAACCCCAGTCGTGATTGATG
CTTGATGCATTGCAGGAGCTGATGCACACCATCAGAACGGCTCAGTTCGA
TGTGTACGATGAACGCCGCCAGCGCTTCTTAGCCTGGCGCAGAAGCTTCC
GCTGTACTAGCTCTCAAAAGCGTAGTCTCTCAGCTGTGCTGCGATTCACG
CCAAATAGCTCTCTCGCCCAGTAGCGGCATGGCCACCTGAGTTTATGTCG
ATCTTGACTGACCTCTACTGGCAGGACAGCAGCAGCAGCAGATCACACCT
CAGTGTATGATGAATCCACTGCCTAATCAAGATGCTTATCAAAGCTGGCC
AGAATTACTTCGCCAACATGTGATGTCCTCAACTACGTAAACTTGATCTG
CAAATAATGATCGCCCTGTTGGCCTTTGTGACCTCTTTTTTTGTTCATGA
TTAACCCTGGGCACAACTGCTTCAAGACGTGTCATCTGATCTGATGACTG
ATGACGCTGAGGCCAACAACACCTTACAAGGGTGTTAGCAATTGCACGTA
GTAATAGCCTGCAAGTCATATCAAAGCAGAGTGGTCGGCAGGCTCTGACG
CTGGCTGACGCTTTGCGGCGCATAAGCCCTTGCAGCCCCAAACGCCCCCT
CAGTGATCGTGCGACGCCGCTCAACTGCAGCTTGCGTCCTTTTGGCACTT
GAAGTTTCACCTGCTGAATACCTACCTACCTTCATGCTTGAGCACGACTC
GCTCGACGGCAAGTCGAAGCTTGGCCGAGCTCCGGCAGCTGCAGCATACC
TGCCCTCCTTGCCTGCTCCCTTGACGGCGCGTCAGAGAGCGCGGCCGATG
CAGTTGGCCTAACCCCGAAGGAGGGACAGACCCGAGTGCAGAAGAGGCGC
TGACGGTGGCGGCTCGATGTGCGTCTGTGCTGCGGCGCACTAGAAGGAAG
TTGAGCTTCAAGGCAGTGGGCGTGATGGCATTTTAGTAGCAGGAAGGCTA
TGGTCACCTCTGCGCGTCGGCGCAATACTGGTCACAGAACACCGCAAAGC
ACGTGCGGCCGCTCGCCCCAGCGCTGCGCTAAGGGTTAGGGCTAGGGTTA
CGGGTAGGGTCAGAATTAGGTTGCTGCGTGCACTGAGCGAACGGTCCACT
CATGAGGTGTGCGTGCGTCGCGCATGCGACGGTGGCGCGCGGAAGCAACG
GTCTCCATCAACTTCAACTTCATACCCCCTCGCATCTGGCACAGAAGTCT
GTAGCACCCACGCAGCAATTGGGGAGCACATTCTGCTACTGCGCCCGAGA
CGCAATGTGTCAGCAGCAAGTCACTAAAGCTGATGCATTGTGAACGGCCA
TTGAGAGCTGAATTTGCAATCTAGGCGCAGATGCCAGATTGGCACGTCTC
CATGCTGTTGGCGCGCTGCGGCATGTGAAGTGCGCCATCCACAGCGCAGT
GGCGCACGCCAGCAGCAATCTGGCATGCACTCTGTCACTGCTAACGTATC
CGTCGCTGCGACAGCGAACCCTGCAGGACAACTGCTCAGGACGGCCGCTG
TCGCACACTTGAAGGTGCAGCTTGAGCCCGCCCCCCCCTTCCCTCATCTG
TGGCAGTGCTCATTGATGGGTGCGCGGTCATGCTGTCAGAGCCCAACGCC
ATATTGACGACTGACAAAGGGGCAGGCAGTCCTACCGAGCGGTATGTATG
CTACGGCCACAGGCCGCTCGTGTACGGGTTTTCTTCCACCGCAACTTCAC
TCCGCTCTCAGCCCCCGCGGTAACCTCAAAATGCACCTCACTGTTAAACT
CCCTAACCCTAACCCTATTCCTACGGTGTATGCGCATCTCGTGCCGCCGC
TGCGCGCTCCCCTTCCCCCCCCCGCTGCCACCAGCACTTGTGTTAATCAG
CGCACAATTAGTGTTGTGTCTGCGCCTGAACCACCACCGCTGCATCGTCA
CTGTCGTATCATACCCGTGCCTAATGCCGCCTCTGCCGCTCTCCCCGCAG
CTGCGCGTGATGATCGGAGCACAACAAGTGTTGTATGTGCGCCTGAACTG
CCGCCGTTGCGTCGGTTACTGTCATGTCATTTCTGTCGTGTCATTACAGT
CATGTCAGATTCATGCCTCACGCCACCTTTCCCGCACGCCCCCCCTGCCC
CCCCGCCCGCTGCGCGGTGCACAACGATGTTGCGTTCGCGCCTGAATCAT
CACCCCAACGAGTCGTAATGGGTGGCGTAGTTGCTGTCGTGTCATATCCA
TGCCTGACGCCGCCTTTGCCGCACGCCCTCCCCCTTCCCCCGGCGCTGCA
CGCGCGTTCGCAGGTGCGCAACAAGTGGTGTGCCTGCGCCTGAATCACCA
CTGTTGCGTCGTTTATTGTCGTTACTGTCGTATCAAATCCATGCCTCATG
CCGCTTCTGCTGCACGCCCCGCCTCCCCCCTGCGCTGCCACCAGCGCCGT
GTTGGTCAGCGCACATTAAGTGTTGTACCTGCGCCTCAGCCACCATTGTT
GCGTCGTTACTGTCGTGTTTGCCTCACGCCGCCTTTGTCGCACCCCCCCC
CCCTCCCTTCACGCCCCTGCTGCGATGCGCGCGTGGCACACAACAGGTGT
TGTGCCTGCGCCTGAATCACCACAGTTGCGTCACTTACTGTCGTGTCGTT
CTGTCGTGTCATTACTGTCGTGTCAAATCCATGCCTCACGCCACCTCTGC
CGCCCCCCCCCCCCCCCCCCCCCCCGCGCTGCACGCGCGCGCCGCAGTTG
CGCGACGCGCAAGCGCCGCTGCGATGGCGACGGCACCAACGCCTGCAGCC
TGTGCGCGCGGCGCCGCCGGCCGTGCGTCTACAGCAAGGTGAGTGCGGCG
CGCCCACGGTCGCCGCGAGTGTGTTTTTTCGCAGGCGCGCACTCACAATC
GGTGACATTGCTCAATAGGGCGCACCATCCTGTGCGCGCCCCGCCGTCGC
CGCCCGTGCGTCTACAGCAAGGTGAGCGCGGCGTGCCCGCAGTCGCCGCG
GGCGCCTCAGGGTACGTGTACTGCCTCGTTTGGTGCACTCCAAACGCTTT
TCCAGCAGTGCAGGTCATTTCCTGCGCTTGTGAGCACTTTTGTAGTCCAA
CTTCTCGTGCTATAGCTCACGTCAGTCCCGTCGGCGCGTTGTGACGTGGG
CCTCCACATTATGCAGTGTGACGCTGTACTTCGAGGCGTGCACTCACAAT
CGGTGGCATTGCTCAGTAGGGCGCACTACCATGTGCGCGCAGCGCCGCCG
CTCGTGCGTCTACAGCAAGGTGAGAGCGCCGCGAGTGTGGTTGTTTGGAG
GCGCGCACTCACAATCAGCGGCATTGCTCAGTCAGGCGTGCGGCATGATG
AGGGTCAGAGTTAGGATGAGGGCTGCTGGGGCTACGGTCAGGGTAGGGTT
TAGGGTTAAGTATGTCGTGAATCAGTCCAAACGCCGCAGTCATTTCGGCT
TTGCTCCCGATGGCTGACGTCGCGTATGCTCGGTGTCGATGCGCCCGCCA
GTCGCGCAGCTATGCCCCCCCGCTGCGCGCGCACGGCGCAAGGGGAGACG
GTGCACAAACGTCATCCACTGCCGCCAGCCGCGGACCTGCTGCTGAGCAT
CAGCGTGCTGTGCGCCAACGCGCGCAACTCGCGAAGATGGCTACAGTAAC
GGCTATGCCCCCCTTGTCAGTCTGCAACTGCGCACTACACTACCAGTCGC
TCCGCAGCGCAACACGCCGCGAAACGTACGCAGTCGCGCCATCATCAGGG
CGCCGTGCAAGCTCGCCTCGCCCGCCATTCGACCACGCCAGCCGCGCCCG
CCGCGCATCCTAACAATGCTCACCCCCCCTCCTCCCTCACGCTGCGCAGA
GACCGTATGCAAAAACGGCTGCGGCGGCGGCGGCGGCGGCGGCAGCTGCT
GCAGCGCCACTGTCCGCAGCAAGTTCAACAGTGACCTCCGCCGCATCTTC
AACAACATCGTCGCCGCCCATGACGCCGCCGGCGGGCTCGCCGCATTCGC
CGCCGCCTGAGGAGCCGCCGCAGCAGCAGCAGCAGCCGCGGCGGCAGCTG
CGGCGGCGGCGCGCGAGCGGCGGCGCAACGGCGGCGGAGGCGCCGGCGGC
AGCGGCGCAGATCGTGGCGCGCCTGCCGCGCGGCCACATCTCCCGCTCCC
CCGCGACAGGTTCGTCACTGTGCGGCTGCCTGCAGCAGCAGGAACGCAGT
ACACGCTGATGTGCGAGCCGCGTCGTGCCGCCGAGTGCCGCCACATGGCG
CGGCGGCAGCAGCTGCCCGCCGCTGCCGCTGCTGCTGCTGCGCCTGCGCG
TCCGCCGGCTGCGCAAGCGGCAGATGGCGGCTGCGGCAGCGGCAGCCTGC
GCGCGGGGCCAGCGGCCAGGACGGAGCGCGCATTGCGCATCTGCTGCCGT
CACGCCTGCCCGCACGCATCGTTGCTGGTCCGATGCGGCGGCACCGCGAG
CGCATGTGGCAGGTTTCCGCAGCGCGCCTGCGCGGCTAG back to topCoding sequence (CDS) from alignment at Contig_231:159542..164280+ >mRNA_18127 ID=mRNA_18127|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_231:159542..164280+ (Tribonema minus UTEX_B_3156 )
ATGGGTGCGCAGCAGCAGAAGGGCCCCGTCAAGAGCAGCAGGCAACGAGG
GAGCAGGACAGCTTGCGACAGTTGCGCGACGCGCAAGCGCCGCTGCGATG
GCGACGGCACCAACGCCTGCAGCCTGTGCGCGCGGCGCCGCCGGCCGTGC
GTCTACAGCAAGCGCCGCCGCTCGTGCGTCTACAGCAAGAGACCGTATGC
AAAAACGGCTGCGGCGGCGGCGGCGGCGGCGGCAGCTGCTGCAGCGCCAC
TGTCCGCAGCAAGTTCAACAGTGACCTCCGCCGCATCTTCAACAACATCG
TCGCCGCCCATGACGCCGCCGGCGGGCTCGCCGCATTCGCCGCCGCCTGA
GGAGCCGCCGCAGCAGCAGCAGCAGCCGCGGCGGCAGCTGCGGCGGCGGC
GCGCGAGCGGCGGCGCAACGGCGGCGGAGGCGCCGGCGGCAGCGGCGCAG
ATCGTGGCGCGCCTGCCGCGCGGCCACATCTCCCGCTCCCCCGCGACAGG
TTCGTCACTATGGCGGCTGCGGCAGCGGCAGCCTGCGCGCGGGGCCAGCG
GCCAGGACGGAGCGCGCATTGCGCATCTGCTGCCGTCACGCCTGCCCGCA
CGCATCGTTGCTGGTCCGATGCGGCGGCACCGCGAGCGCATGTGGCAGGT
TTCCGCAGCGCGCCTGCGCGGCTAG back to top
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