Trimin1|354334|estExt_Genemark1.C_Ctg_2310018 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354334
Unique NameTrimin1|354334|estExt_Genemark1.C_Ctg_2310018
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length225
Homology
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BLAST of jgi.p|Trimin1|354334 vs. uniprot
Match: A0A835YZS9_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 8.020e-72
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 
Query:    1 MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG 224
            MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG
Sbjct:    1 MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG 224
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354334 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YZS9_9STRA8.020e-72100.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 16..61
e-value: 0.0035
score: 26.6
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 20..57
e-value: 2.4E-6
score: 27.6
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 21..50
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 21..52
score: 9.446
IPR001138Zn(2)-C6 fungal-type DNA-binding domainCDDcd00067GAL4coord: 18..53
e-value: 8.41664E-6
score: 39.569
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 20..101
e-value: 3.0E-7
score: 32.7
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 12..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..150
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_231contigContig_231:159565..164280 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354334mRNA_18127Tribonema minus UTEX_B_3156 mRNAContig_231 159542..164280 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354334|estExt_Genemark1.C_Ctg_2310018 ID=Trimin1|354334|estExt_Genemark1.C_Ctg_2310018|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACSLCARRRRPC
VYSKRRRSCVYSKRPYAKTAAAAAAAAAAAAAPLSAASSTVTSAASSTTS
SPPMTPPAGSPHSPPPEEPPQQQQQPRRQLRRRRASGGATAAEAPAAAAQ
IVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPA
RIVAGPMRRHRERMWQVSAARLRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf