mRNA_18127 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354334
Unique Name	mRNA_18127
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354334 vs. uniprot
Match: A0A835YZS9_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.040e-71
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 3

Query:   24 MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG 695
            MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG
Sbjct:    1 MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACXXXXXXRRPCVYSKXXXXXXXXXRPYAKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQIVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPARIVAGPMRRHRERMWQVSAARLRG 224

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354334 vs. uniprot

BLAST of jgi.p|Trimin1|354334 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YZS9_9STRA	1.040e-71	100.00	Zn(2)-C6 fungal-type domain-containing protein n=1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_231	contig	Contig_231:159542..164280 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354334\|estExt_Genemark1.C_Ctg_2310018
Hectar predicted targeting category	other localisation
TranscriptId	354656
Track	FilteredModels1
ProteinId	354334

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354334	gene_18127	Tribonema minus UTEX_B_3156	gene	Contig_231 159542..164280 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354334	Trimin1\|354334\|estExt_Genemark1.C_Ctg_2310018	Tribonema minus UTEX_B_3156	polypeptide	Contig_231 159565..164280 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_18127_1	exon_18127_1	Tribonema minus UTEX_B_3156	exon	Contig_231 159542..159635 +
exon_18127_2	exon_18127_2	Tribonema minus UTEX_B_3156	exon	Contig_231 162539..162629 +
exon_18127_3	exon_18127_3	Tribonema minus UTEX_B_3156	exon	Contig_231 163034..163060 +
exon_18127_4	exon_18127_4	Tribonema minus UTEX_B_3156	exon	Contig_231 163641..163960 +
exon_18127_5	exon_18127_5	Tribonema minus UTEX_B_3156	exon	Contig_231 164115..164280 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_18127	UTR5_18127	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_231 159542..159564 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_18127	CDS_18127	Tribonema minus UTEX_B_3156	CDS	Contig_231 159565..159635 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_231:159542..164280+
coding sequence from alignment at Contig_231:159542..164280+

spliced messenger RNA

>mRNA_18127 ID=mRNA_18127|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=698bp|location=Sequence derived from alignment at Contig_231:159542..164280+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGGAGCGGTAGCGCGGTCCGCTATGGGTGCGCAGCAGCAGAAGGGCCCC
GTCAAGAGCAGCAGGCAACGAGGGAGCAGGACAGCTTGCGACAGTTGCGC
GACGCGCAAGCGCCGCTGCGATGGCGACGGCACCAACGCCTGCAGCCTGT
GCGCGCGGCGCCGCCGGCCGTGCGTCTACAGCAAGCGCCGCCGCTCGTGC
GTCTACAGCAAGAGACCGTATGCAAAAACGGCTGCGGCGGCGGCGGCGGC
GGCGGCAGCTGCTGCAGCGCCACTGTCCGCAGCAAGTTCAACAGTGACCT
CCGCCGCATCTTCAACAACATCGTCGCCGCCCATGACGCCGCCGGCGGGC
TCGCCGCATTCGCCGCCGCCTGAGGAGCCGCCGCAGCAGCAGCAGCAGCC
GCGGCGGCAGCTGCGGCGGCGGCGCGCGAGCGGCGGCGCAACGGCGGCGG
AGGCGCCGGCGGCAGCGGCGCAGATCGTGGCGCGCCTGCCGCGCGGCCAC
ATCTCCCGCTCCCCCGCGACAGGTTCGTCACTATGGCGGCTGCGGCAGCG
GCAGCCTGCGCGCGGGGCCAGCGGCCAGGACGGAGCGCGCATTGCGCATC
TGCTGCCGTCACGCCTGCCCGCACGCATCGTTGCTGGTCCGATGCGGCGG
CACCGCGAGCGCATGTGGCAGGTTTCCGCAGCGCGCCTGCGCGGCTAG

protein sequence of jgi.p|Trimin1|354334

>Trimin1|354334|estExt_Genemark1.C_Ctg_2310018 ID=Trimin1|354334|estExt_Genemark1.C_Ctg_2310018|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp
MGAQQQKGPVKSSRQRGSRTACDSCATRKRRCDGDGTNACSLCARRRRPC
VYSKRRRSCVYSKRPYAKTAAAAAAAAAAAAAPLSAASSTVTSAASSTTS
SPPMTPPAGSPHSPPPEEPPQQQQQPRRQLRRRRASGGATAAEAPAAAAQ
IVARLPRGHISRSPATGSSLWRLRQRQPARGASGQDGARIAHLLPSRLPA
RIVAGPMRRHRERMWQVSAARLRG*

mRNA from alignment at Contig_231:159542..164280+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_18127 ID=mRNA_18127|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4739bp|location=Sequence derived from alignment at Contig_231:159542..164280+ (Tribonema minus UTEX_B_3156 )
GTGGAGCGGTAGCGCGGTCCGCTATGGGTGCGCAGCAGCAGAAGGGCCCC
GTCAAGAGCAGCAGGCAACGAGGGAGCAGGACAGCTTGCGACAGGTGCGA
ACCATCCGATGCTGGACCTGCGTGATTCAACACTTTCGATCTCAAACCAT
GCCTTGGAAAGTGCGGAGAGCGAAAGCGACAGCAGTCCATGGAACTATCT
TGGTGTGCCGGTGTGCTGCCGGTCTTGAAGCTCTCGTCTCAGCTTTCTGC
AATGCCGGCAATACTTCGATTTTGAAATTGAACCCCAGTCGTGATTGATG
CTTGATGCATTGCAGGAGCTGATGCACACCATCAGAACGGCTCAGTTCGA
TGTGTACGATGAACGCCGCCAGCGCTTCTTAGCCTGGCGCAGAAGCTTCC
GCTGTACTAGCTCTCAAAAGCGTAGTCTCTCAGCTGTGCTGCGATTCACG
CCAAATAGCTCTCTCGCCCAGTAGCGGCATGGCCACCTGAGTTTATGTCG
ATCTTGACTGACCTCTACTGGCAGGACAGCAGCAGCAGCAGATCACACCT
CAGTGTATGATGAATCCACTGCCTAATCAAGATGCTTATCAAAGCTGGCC
AGAATTACTTCGCCAACATGTGATGTCCTCAACTACGTAAACTTGATCTG
CAAATAATGATCGCCCTGTTGGCCTTTGTGACCTCTTTTTTTGTTCATGA
TTAACCCTGGGCACAACTGCTTCAAGACGTGTCATCTGATCTGATGACTG
ATGACGCTGAGGCCAACAACACCTTACAAGGGTGTTAGCAATTGCACGTA
GTAATAGCCTGCAAGTCATATCAAAGCAGAGTGGTCGGCAGGCTCTGACG
CTGGCTGACGCTTTGCGGCGCATAAGCCCTTGCAGCCCCAAACGCCCCCT
CAGTGATCGTGCGACGCCGCTCAACTGCAGCTTGCGTCCTTTTGGCACTT
GAAGTTTCACCTGCTGAATACCTACCTACCTTCATGCTTGAGCACGACTC
GCTCGACGGCAAGTCGAAGCTTGGCCGAGCTCCGGCAGCTGCAGCATACC
TGCCCTCCTTGCCTGCTCCCTTGACGGCGCGTCAGAGAGCGCGGCCGATG
CAGTTGGCCTAACCCCGAAGGAGGGACAGACCCGAGTGCAGAAGAGGCGC
TGACGGTGGCGGCTCGATGTGCGTCTGTGCTGCGGCGCACTAGAAGGAAG
TTGAGCTTCAAGGCAGTGGGCGTGATGGCATTTTAGTAGCAGGAAGGCTA
TGGTCACCTCTGCGCGTCGGCGCAATACTGGTCACAGAACACCGCAAAGC
ACGTGCGGCCGCTCGCCCCAGCGCTGCGCTAAGGGTTAGGGCTAGGGTTA
CGGGTAGGGTCAGAATTAGGTTGCTGCGTGCACTGAGCGAACGGTCCACT
CATGAGGTGTGCGTGCGTCGCGCATGCGACGGTGGCGCGCGGAAGCAACG
GTCTCCATCAACTTCAACTTCATACCCCCTCGCATCTGGCACAGAAGTCT
GTAGCACCCACGCAGCAATTGGGGAGCACATTCTGCTACTGCGCCCGAGA
CGCAATGTGTCAGCAGCAAGTCACTAAAGCTGATGCATTGTGAACGGCCA
TTGAGAGCTGAATTTGCAATCTAGGCGCAGATGCCAGATTGGCACGTCTC
CATGCTGTTGGCGCGCTGCGGCATGTGAAGTGCGCCATCCACAGCGCAGT
GGCGCACGCCAGCAGCAATCTGGCATGCACTCTGTCACTGCTAACGTATC
CGTCGCTGCGACAGCGAACCCTGCAGGACAACTGCTCAGGACGGCCGCTG
TCGCACACTTGAAGGTGCAGCTTGAGCCCGCCCCCCCCTTCCCTCATCTG
TGGCAGTGCTCATTGATGGGTGCGCGGTCATGCTGTCAGAGCCCAACGCC
ATATTGACGACTGACAAAGGGGCAGGCAGTCCTACCGAGCGGTATGTATG
CTACGGCCACAGGCCGCTCGTGTACGGGTTTTCTTCCACCGCAACTTCAC
TCCGCTCTCAGCCCCCGCGGTAACCTCAAAATGCACCTCACTGTTAAACT
CCCTAACCCTAACCCTATTCCTACGGTGTATGCGCATCTCGTGCCGCCGC
TGCGCGCTCCCCTTCCCCCCCCCGCTGCCACCAGCACTTGTGTTAATCAG
CGCACAATTAGTGTTGTGTCTGCGCCTGAACCACCACCGCTGCATCGTCA
CTGTCGTATCATACCCGTGCCTAATGCCGCCTCTGCCGCTCTCCCCGCAG
CTGCGCGTGATGATCGGAGCACAACAAGTGTTGTATGTGCGCCTGAACTG
CCGCCGTTGCGTCGGTTACTGTCATGTCATTTCTGTCGTGTCATTACAGT
CATGTCAGATTCATGCCTCACGCCACCTTTCCCGCACGCCCCCCCTGCCC
CCCCGCCCGCTGCGCGGTGCACAACGATGTTGCGTTCGCGCCTGAATCAT
CACCCCAACGAGTCGTAATGGGTGGCGTAGTTGCTGTCGTGTCATATCCA
TGCCTGACGCCGCCTTTGCCGCACGCCCTCCCCCTTCCCCCGGCGCTGCA
CGCGCGTTCGCAGGTGCGCAACAAGTGGTGTGCCTGCGCCTGAATCACCA
CTGTTGCGTCGTTTATTGTCGTTACTGTCGTATCAAATCCATGCCTCATG
CCGCTTCTGCTGCACGCCCCGCCTCCCCCCTGCGCTGCCACCAGCGCCGT
GTTGGTCAGCGCACATTAAGTGTTGTACCTGCGCCTCAGCCACCATTGTT
GCGTCGTTACTGTCGTGTTTGCCTCACGCCGCCTTTGTCGCACCCCCCCC
CCCTCCCTTCACGCCCCTGCTGCGATGCGCGCGTGGCACACAACAGGTGT
TGTGCCTGCGCCTGAATCACCACAGTTGCGTCACTTACTGTCGTGTCGTT
CTGTCGTGTCATTACTGTCGTGTCAAATCCATGCCTCACGCCACCTCTGC
CGCCCCCCCCCCCCCCCCCCCCCCCGCGCTGCACGCGCGCGCCGCAGTTG
CGCGACGCGCAAGCGCCGCTGCGATGGCGACGGCACCAACGCCTGCAGCC
TGTGCGCGCGGCGCCGCCGGCCGTGCGTCTACAGCAAGGTGAGTGCGGCG
CGCCCACGGTCGCCGCGAGTGTGTTTTTTCGCAGGCGCGCACTCACAATC
GGTGACATTGCTCAATAGGGCGCACCATCCTGTGCGCGCCCCGCCGTCGC
CGCCCGTGCGTCTACAGCAAGGTGAGCGCGGCGTGCCCGCAGTCGCCGCG
GGCGCCTCAGGGTACGTGTACTGCCTCGTTTGGTGCACTCCAAACGCTTT
TCCAGCAGTGCAGGTCATTTCCTGCGCTTGTGAGCACTTTTGTAGTCCAA
CTTCTCGTGCTATAGCTCACGTCAGTCCCGTCGGCGCGTTGTGACGTGGG
CCTCCACATTATGCAGTGTGACGCTGTACTTCGAGGCGTGCACTCACAAT
CGGTGGCATTGCTCAGTAGGGCGCACTACCATGTGCGCGCAGCGCCGCCG
CTCGTGCGTCTACAGCAAGGTGAGAGCGCCGCGAGTGTGGTTGTTTGGAG
GCGCGCACTCACAATCAGCGGCATTGCTCAGTCAGGCGTGCGGCATGATG
AGGGTCAGAGTTAGGATGAGGGCTGCTGGGGCTACGGTCAGGGTAGGGTT
TAGGGTTAAGTATGTCGTGAATCAGTCCAAACGCCGCAGTCATTTCGGCT
TTGCTCCCGATGGCTGACGTCGCGTATGCTCGGTGTCGATGCGCCCGCCA
GTCGCGCAGCTATGCCCCCCCGCTGCGCGCGCACGGCGCAAGGGGAGACG
GTGCACAAACGTCATCCACTGCCGCCAGCCGCGGACCTGCTGCTGAGCAT
CAGCGTGCTGTGCGCCAACGCGCGCAACTCGCGAAGATGGCTACAGTAAC
GGCTATGCCCCCCTTGTCAGTCTGCAACTGCGCACTACACTACCAGTCGC
TCCGCAGCGCAACACGCCGCGAAACGTACGCAGTCGCGCCATCATCAGGG
CGCCGTGCAAGCTCGCCTCGCCCGCCATTCGACCACGCCAGCCGCGCCCG
CCGCGCATCCTAACAATGCTCACCCCCCCTCCTCCCTCACGCTGCGCAGA
GACCGTATGCAAAAACGGCTGCGGCGGCGGCGGCGGCGGCGGCAGCTGCT
GCAGCGCCACTGTCCGCAGCAAGTTCAACAGTGACCTCCGCCGCATCTTC
AACAACATCGTCGCCGCCCATGACGCCGCCGGCGGGCTCGCCGCATTCGC
CGCCGCCTGAGGAGCCGCCGCAGCAGCAGCAGCAGCCGCGGCGGCAGCTG
CGGCGGCGGCGCGCGAGCGGCGGCGCAACGGCGGCGGAGGCGCCGGCGGC
AGCGGCGCAGATCGTGGCGCGCCTGCCGCGCGGCCACATCTCCCGCTCCC
CCGCGACAGGTTCGTCACTGTGCGGCTGCCTGCAGCAGCAGGAACGCAGT
ACACGCTGATGTGCGAGCCGCGTCGTGCCGCCGAGTGCCGCCACATGGCG
CGGCGGCAGCAGCTGCCCGCCGCTGCCGCTGCTGCTGCTGCGCCTGCGCG
TCCGCCGGCTGCGCAAGCGGCAGATGGCGGCTGCGGCAGCGGCAGCCTGC
GCGCGGGGCCAGCGGCCAGGACGGAGCGCGCATTGCGCATCTGCTGCCGT
CACGCCTGCCCGCACGCATCGTTGCTGGTCCGATGCGGCGGCACCGCGAG
CGCATGTGGCAGGTTTCCGCAGCGCGCCTGCGCGGCTAG

Coding sequence (CDS) from alignment at Contig_231:159542..164280+

>mRNA_18127 ID=mRNA_18127|Name=jgi.p|Trimin1|354334|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_231:159542..164280+ (Tribonema minus UTEX_B_3156 )
ATGGGTGCGCAGCAGCAGAAGGGCCCCGTCAAGAGCAGCAGGCAACGAGG
GAGCAGGACAGCTTGCGACAGTTGCGCGACGCGCAAGCGCCGCTGCGATG
GCGACGGCACCAACGCCTGCAGCCTGTGCGCGCGGCGCCGCCGGCCGTGC
GTCTACAGCAAGCGCCGCCGCTCGTGCGTCTACAGCAAGAGACCGTATGC
AAAAACGGCTGCGGCGGCGGCGGCGGCGGCGGCAGCTGCTGCAGCGCCAC
TGTCCGCAGCAAGTTCAACAGTGACCTCCGCCGCATCTTCAACAACATCG
TCGCCGCCCATGACGCCGCCGGCGGGCTCGCCGCATTCGCCGCCGCCTGA
GGAGCCGCCGCAGCAGCAGCAGCAGCCGCGGCGGCAGCTGCGGCGGCGGC
GCGCGAGCGGCGGCGCAACGGCGGCGGAGGCGCCGGCGGCAGCGGCGCAG
ATCGTGGCGCGCCTGCCGCGCGGCCACATCTCCCGCTCCCCCGCGACAGG
TTCGTCACTATGGCGGCTGCGGCAGCGGCAGCCTGCGCGCGGGGCCAGCG
GCCAGGACGGAGCGCGCATTGCGCATCTGCTGCCGTCACGCCTGCCCGCA
CGCATCGTTGCTGGTCCGATGCGGCGGCACCGCGAGCGCATGTGGCAGGT
TTCCGCAGCGCGCCTGCGCGGCTAG