mRNA_8913 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135353
Unique NamemRNA_8913
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: A0A836CC45_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC45_9STRA)

HSP 1 Score: 324 bits (830), Expect = 5.390e-112
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1
Query:    1 GALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALPQQ 501
            GALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALPQQ
Sbjct:    1 GALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALPQQ 167          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.410e-30
Identity = 74/164 (45.12%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    4 ALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALP 495
            +L  LHTL +SYNQL  LD S L  +PALRHLD SHNLL R+EP+        LP  LETL++SHNRI+RIGG +A C  LR                                 + S R LSFNR+L+ L L GNP A   RYRP++ C LPH+ +ID +A+P
Sbjct: 1082 SLIGLHTLVLSYNQLQVLDISVLTTMPALRHLDVSHNLLCRMEPMDGRD----LPPRLETLNMSHNRISRIGG-IAQCFLLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASARALSFNRSLKLLWLEGNPLARHPRYRPTLTCLLPHVRSIDSRAMP 1240          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.860e-29
Identity = 73/164 (44.51%), Postives = 91/164 (55.49%), Query Frame = 1
Query:    4 ALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALP 495
            +L  LHTL +SYNQL  LD S L  +PALRHLD SHNLL R+EP+        LP  LETL++SHNRI+RIGG +  C  LR                                 + S R LSFNR+L+ L L GNP A   RYRP++ C LPH+ +ID +A+P
Sbjct: 1232 SLIGLHTLVLSYNQLQVLDISVLTTMPALRHLDVSHNLLCRMEPMDGRD----LPPRLETLNMSHNRISRIGG-ITQCFLLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASARALSFNRSLKLLWLEGNPLARHPRYRPTLTCLLPHVRSIDSRAMP 1390          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: A0A7S1UGE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGE6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.440e-12
Identity = 54/167 (32.34%), Postives = 72/167 (43.11%), Query Frame = 1
Query:    1 GALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALPQQ 501
            G   AL +LN+S NQL ALD + L  L +LRHLD                             + H R      G+  C +L+                              +  S+ VR+LSFNR+LRSL+L G P+AA ARYRPS+   LP L  ID + LP++
Sbjct:   69 GLQAALVSLNLSCNQLPALDPAVLMALHSLRHLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVHIR------GLEPCFKLKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRVSMDVRLLSFNRSLRSLILEGTPYAAQARYRPSLRSLLPGLRAIDRRVLPRR 229          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: UPI001ADDEA91 (serine/threonine-protein kinase 11-interacting protein isoform X4 n=1 Tax=Cygnus olor TaxID=8869 RepID=UPI001ADDEA91)

HSP 1 Score: 70.1 bits (170), Expect = 6.430e-11
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   16 LHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGG-GVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHL 468
            LHT+N SYN +TALD S L  L ALR LD SHN +   E          L   LE L+L++N ++++   G+   ++L  + L +N L S  G+E L  L+HLD+ +N +     +  LS    L+ L L GNP      +R +   TL HL
Sbjct:   77 LHTVNFSYNSITALDDS-LQLLNALRVLDLSHNKVQDCEHY-----LTTLTE-LEYLNLAYNFLSKVPNLGIFSRSKLVTLILRNNELDSINGVEQLVNLQHLDVAYNLLLEHAQLAPLSTLHCLKKLHLEGNPLWFHQNHRSA---TLVHL 218          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: UPI001ADE705A (serine/threonine-protein kinase 11-interacting protein isoform X3 n=1 Tax=Cygnus olor TaxID=8869 RepID=UPI001ADE705A)

HSP 1 Score: 70.1 bits (170), Expect = 6.460e-11
Identity = 56/152 (36.84%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   16 LHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGG-GVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHL 468
            LHT+N SYN +TALD S L  L ALR LD SHN +   E          L   LE L+L++N ++++   G+   ++L  + L +N L S  G+E L  L+HLD+ +N +     +  LS    L+ L L GNP      +R +   TL HL
Sbjct:  128 LHTVNFSYNSITALDDS-LQLLNALRVLDLSHNKVQDCEHY-----LTTLTE-LEYLNLAYNFLSKVPNLGIFSRSKLVTLILRNNELDSINGVEQLVNLQHLDVAYNLLLEHAQLAPLSTLHCLKKLHLEGNPLWFHQNHRSA---TLVHL 269          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: A0A7K7KYP0_9AVES (Serine/threonine-protein kinase 11-interacting protein (Fragment) n=1 Tax=Asarcornis scutulata TaxID=75869 RepID=A0A7K7KYP0_9AVES)

HSP 1 Score: 69.7 bits (169), Expect = 8.680e-11
Identity = 58/166 (34.94%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   16 LHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGG-GVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHL--------VTIDHK 486
            LHT+N SYN +TALD S L  L ALR LD SHN +   E              LE L+L++N ++++   G+   ++L  + L +N L S  G+E L  L+HLD+ +N +     +  LS    L+ L L GNP      +R +   TL HL        V+I H+
Sbjct:  144 LHTVNFSYNSITALDDS-LQLLNALRVLDLSHNKVQDCE------LYLTTLTELEYLNLAYNFLSKVPNLGIFSRSKLVTLILRNNELDSINGVEQLVNLQHLDVAYNLLLEHAQLAPLSTLHYLKKLHLEGNPLWFHQNHRSA---TLVHLSPRAASSNVSISHR 299          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: U3I6T7_ANAPP (Serine/threonine-protein kinase 11-interacting protein n=7 Tax=Anatidae TaxID=8830 RepID=U3I6T7_ANAPP)

HSP 1 Score: 69.7 bits (169), Expect = 8.770e-11
Identity = 58/166 (34.94%), Postives = 84/166 (50.60%), Query Frame = 1
Query:   16 LHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGG-GVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHL--------VTIDHK 486
            LHT+N SYN +TALD S L  L ALR LD SHN +   E              LE L+L++N ++++   G+   ++L  + L +N L S  G+E L  L+HLD+ +N +     +  LS    L+ L L GNP      +R +   TL HL        V+I H+
Sbjct:  208 LHTVNFSYNSITALDDS-LQLLNALRVLDLSHNKVQDCE------LYLTTLTELEYLNLAYNFLSKVPNLGIFSRSKLVTLILRNNELDSINGVEQLVNLQHLDVAYNLLLEHAQLAPLSTLHYLKKLHLEGNPLWFHQNHRSA---TLVHLSPRAASSNVSISHR 363          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: R0JFV1_ANAPL (Serine/threonine kinase 11-interacting protein (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0JFV1_ANAPL)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-10
Identity = 55/152 (36.18%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   16 LHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGG-GVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHL 468
            LHT+N SYN +TALD S L  L ALR LD SHN +   E              LE L+L++N ++++   G+   ++L  + L +N L S  G+E L  L+HLD+ +N +     +  LS    L+ L L GNP      +R +   TL HL
Sbjct:   76 LHTVNFSYNSITALDDS-LQLLNALRVLDLSHNKVQDCE------LYLTTLTELEYLNLAYNFLSKVPNLGIFSRSKLVTLILRNNELDSINGVEQLVNLQHLDVAYNLLLEHAQLAPLSTLHYLKKLHLEGNPLWFHQNHRSA---TLVHL 217          
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Match: A0A8C0A192_9AVES (Serine/threonine-protein kinase 11-interacting protein n=10 Tax=Anatidae TaxID=8830 RepID=A0A8C0A192_9AVES)

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-10
Identity = 55/152 (36.18%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   16 LHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGGAAARLPRGLETLDLSHNRIARIGG-GVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHL 468
            LHT+N SYN +TALD S L  L ALR LD SHN +   E              LE L+L++N ++++   G+   ++L  + L +N L S  G+E L  L+HLD+ +N +     +  LS    L+ L L GNP      +R +   TL HL
Sbjct:  160 LHTVNFSYNSITALDDS-LQLLNALRVLDLSHNKVQDCE------LYLTTLTELEYLNLAYNFLSKVPNLGIFSRSKLVTLILRNNELDSINGVEQLVNLQHLDVAYNLLLEHAQLAPLSTLHYLKKLHLEGNPLWFHQNHRSA---TLVHL 301          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135353 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC45_9STRA5.390e-112100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LGJ5_ECTSI8.410e-3045.12Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE2.860e-2944.51EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1UGE6_9STRA1.440e-1232.34Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI001ADDEA916.430e-1136.84serine/threonine-protein kinase 11-interacting pro... [more]
UPI001ADE705A6.460e-1136.84serine/threonine-protein kinase 11-interacting pro... [more]
A0A7K7KYP0_9AVES8.680e-1134.94Serine/threonine-protein kinase 11-interacting pro... [more]
U3I6T7_ANAPP8.770e-1134.94Serine/threonine-protein kinase 11-interacting pro... [more]
R0JFV1_ANAPL1.180e-1036.18Serine/threonine kinase 11-interacting protein (Fr... [more]
A0A8C0A192_9AVES1.200e-1036.18Serine/threonine-protein kinase 11-interacting pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_50contigContig_50:431960..432460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135353|gw1.50.47.1
Descriptionaxoneme assembly
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Evalue1.38e-30
Seed ortholog2880.D8LGJ5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-10_001830.1
TranscriptId135675
TrackFilteredModels1
ProteinId135353
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135353gene_8913Tribonema minus UTEX_B_3156 geneContig_50 431960..432460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8913_1exon_8913_1Tribonema minus UTEX_B_3156 exonContig_50 431960..432460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8913CDS_8913Tribonema minus UTEX_B_3156 CDSContig_50 431960..432460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135353Trimin1|135353|gw1.50.47.1Tribonema minus UTEX_B_3156 polypeptideContig_50 431960..432460 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8913 ID=mRNA_8913|Name=jgi.p|Trimin1|135353|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=501bp|location=Sequence derived from alignment at Contig_50:431960..432460- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCGCGCTGCGCGCGCTGCACACGCTCAACGTCTCGTACAACCAGCTCAC
TGCGCTCGACGCGTCGGCGCTCGCGGAGCTGCCGGCGCTGCGCCACCTTG
ACGCCTCGCACAACCTGCTCACGCGCGTGGAGCCGGTCGGCAGCGGCGGC
GCGGCGGCGCGCCTGCCGCGCGGCCTCGAGACGCTCGACCTCTCGCACAA
CCGCATTGCACGCATCGGCGGCGGCGTCGCGGGCTGCGCGCGGCTGCGCG
TCGTGCGCCTCGCGCACAACCGCCTGCGCAGCGCCGGCGGCCTCGAGTCG
CTGACCGCGCTCGAGCACCTCGACCTGGGGCACAACGCCATCGCGGGCTC
CCTGTCGGTGCGCATCCTGTCCTTCAACCGCGCGCTGCGCTCGCTCGTGC
TCGCGGGCAACCCGTTCGCGGCGGGCGCGCGCTACCGCCCCAGCGTCATC
TGCACGCTGCCGCACCTCGTCACCATCGACCACAAGGCGCTGCCGCAGCA
G
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protein sequence of jgi.p|Trimin1|135353

>Trimin1|135353|gw1.50.47.1 ID=Trimin1|135353|gw1.50.47.1|Name=jgi.p|Trimin1|135353|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=167bp
GALRALHTLNVSYNQLTALDASALAELPALRHLDASHNLLTRVEPVGSGG
AAARLPRGLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLES
LTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVI
CTLPHLVTIDHKALPQQ
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mRNA from alignment at Contig_50:431960..432460-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8913 ID=mRNA_8913|Name=jgi.p|Trimin1|135353|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=501bp|location=Sequence derived from alignment at Contig_50:431960..432460- (Tribonema minus UTEX_B_3156 )
GGCGCGCTGCGCGCGCTGCACACGCTCAACGTCTCGTACAACCAGCTCAC TGCGCTCGACGCGTCGGCGCTCGCGGAGCTGCCGGCGCTGCGCCACCTTG ACGCCTCGCACAACCTGCTCACGCGCGTGGAGCCGGTCGGCAGCGGCGGC GCGGCGGCGCGCCTGCCGCGCGGCCTCGAGACGCTCGACCTCTCGCACAA CCGCATTGCACGCATCGGCGGCGGCGTCGCGGGCTGCGCGCGGCTGCGCG TCGTGCGCCTCGCGCACAACCGCCTGCGCAGCGCCGGCGGCCTCGAGTCG CTGACCGCGCTCGAGCACCTCGACCTGGGGCACAACGCCATCGCGGGCTC CCTGTCGGTGCGCATCCTGTCCTTCAACCGCGCGCTGCGCTCGCTCGTGC TCGCGGGCAACCCGTTCGCGGCGGGCGCGCGCTACCGCCCCAGCGTCATC TGCACGCTGCCGCACCTCGTCACCATCGACCACAAGGCGCTGCCGCAGCA G
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Coding sequence (CDS) from alignment at Contig_50:431960..432460-

>mRNA_8913 ID=mRNA_8913|Name=jgi.p|Trimin1|135353|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=501bp|location=Sequence derived from alignment at Contig_50:431960..432460- (Tribonema minus UTEX_B_3156 )
GGCGCGCTGCGCGCGCTGCACACGCTCAACGTCTCGTACAACCAGCTCAC
TGCGCTCGACGCGTCGGCGCTCGCGGAGCTGCCGGCGCTGCGCCACCTTG
ACGCCTCGCACAACCTGCTCACGCGCGTGGAGCCGGTCGGCAGCGGCGGC
GCGGCGGCGCGCCTGCCGCGCGGCCTCGAGACGCTCGACCTCTCGCACAA
CCGCATTGCACGCATCGGCGGCGGCGTCGCGGGCTGCGCGCGGCTGCGCG
TCGTGCGCCTCGCGCACAACCGCCTGCGCAGCGCCGGCGGCCTCGAGTCG
CTGACCGCGCTCGAGCACCTCGACCTGGGGCACAACGCCATCGCGGGCTC
CCTGTCGGTGCGCATCCTGTCCTTCAACCGCGCGCTGCGCTCGCTCGTGC
TCGCGGGCAACCCGTTCGCGGCGGGCGCGCGCTACCGCCCCAGCGTCATC
TGCACGCTGCCGCACCTCGTCACCATCGACCACAAGGCGCTGCCGCAGCA
G
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