mRNA_6338 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348274
Unique NamemRNA_6338
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A836CIY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY3_9STRA)

HSP 1 Score: 486 bits (1252), Expect = 1.450e-171
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
Query:   52 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR 876
            MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR
Sbjct:    1 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR 275          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z0J6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J6_9STRA)

HSP 1 Score: 353 bits (905), Expect = 1.280e-119
Identity = 180/223 (80.72%), Postives = 194/223 (87.00%), Query Frame = 1
Query:   52 MVGKSACTLAVFAMLAAA-SAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 717
            M+G+  C+LA+ A+ A A SAKSLRG     R   VSP Y G PY+AIE+PGVLEAEFFDVGGEGVTYHT  VPVVLP NVIRLNEDGAKVTVQINDLSA V GSEPAGAIGVGMGVTGEWQRYT+TAL+DGTYLPTWRIAT+DP  GVFPVETTLTIGTGAEADPCALPGAGGLDLAG+NTG YKTF SY SKDPI IPAGEHVLT+CY NVNTFE+N+IDF
Sbjct:    1 MIGQITCSLALVAVFAVATSAKSLRG--HVPRKALVSPAYAGVPYEAIEIPGVLEAEFFDVGGEGVTYHTDAVPVVLPPNVIRLNEDGAKVTVQINDLSAAVAGSEPAGAIGVGMGVTGEWQRYTVTALEDGTYLPTWRIATYDPTFGVFPVETTLTIGTGAEADPCALPGAGGLDLAGVNTGGYKTFESYTSKDPIAIPAGEHVLTVCYVNVNTFELNFIDF 221          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z301_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z301_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.120e-76
Identity = 140/245 (57.14%), Postives = 168/245 (68.57%), Query Frame = 1
Query:   52 MVGKSACTLAVFAMLAA-ASAKSLRGGYQTQRSLDVSPLYKGEPYKA--IEVPGVLEAEFFDVGGEGVTYHTVVVPVV---LPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCA--LPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSA 762
            M+G+S CT+A+F +L A ASAKSLRGG   QR L +SP Y+G PY+A  I +PG+L+ E FD GGEGV YH +  P      P NVIR +       +QIND   DV GSE  G IG+GMG+ GEW RYTI A +  TY P WRIAT+DP GG   V+T L +GTGAEA+PC   LP AGGLD+  +NTG YKTF SY SKDPITIP G HVLT+C ++V  FE+NYIDF + V  GG T APSA
Sbjct:    1 MIGQSTCTVALFCILCACASAKSLRGGRHQQRRLKISPDYQGTPYEANPIAIPGMLQVELFDKGGEGVGYHDIKDPAAKAKAPPNVIRQDSP-----IQINDEGPDVNGSEAVGQIGIGMGIGGEWLRYTIEATETATYRPIWRIATYDPKGGDNVVQTNLALGTGAEANPCTGDLPVAGGLDIK-VNTGGYKTFKSYTSKDPITIPKGAHVLTVCLSDVVDFEMNYIDF-EVVGEGGATEAPSA 238          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A836C771_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C771_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.680e-53
Identity = 117/244 (47.95%), Postives = 144/244 (59.02%), Query Frame = 1
Query:   49 IMVGKSACTLAVFAMLAAASAKS------LRGGYQTQRSLDVSPLYK---GEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPV--VLPANVIRLNEDGAKVTVQINDLSADVG--GSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPG----AGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPV 729
            ++ G  A T+A  A L AA A +        GG    RSL V P Y    G PY    +PGVLEAE+FD+GGEG+ YH + +     +P N +R+ EDG  V +QIND+S       SE AG + VGMGVTGEW RYT+     G +  TWRIA  DP G + PV T +  GTGAEADPC        AGGLDL G+NT  YK F  + S D I +PAGEHVL +C T+V  FE+NYI F +PV
Sbjct:   83 MVTGTRARTIAGGAALCAAMANAATMVVDFEGGQA--RSLLVDPAYVTLGGTPYVPTTLPGVLEAEYFDMGGEGIAYHNIELEADATMPENKLRVEEDGEPVALQINDVSGATNPDASEAAGELAVGMGVTGEWMRYTVDVPAAGVFTATWRIAVHDPNGALLPVVTKIVRGTGAEADPCKEDAQHVAAGGLDLPGVNTLGYKQFGDFVSADLIALPAGEHVLAVCLTDVAAFELNYISF-RPV 323          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZEP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 6.430e-42
Identity = 102/221 (46.15%), Postives = 133/221 (60.18%), Query Frame = 1
Query:  142 RSLDVSPLYKGEPYKAIEVPGV-----LEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAK------VTVQINDL--SADVGG--SEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPS 759
            R+L V+  YKG PY    +P V     LEAE+FD+GG+GV Y+ +      P N IRL E   K      V +QIND+  S D  G  +E  G I VGMGV GEW RYTI     GT+   WR+A +D +G    +ET LT+GTG EADPCAL GAGGL +A  NTG +K F ++   + I +P+GEH+LT+C   V  FE+N++ FG+  P  GD A P+
Sbjct:  379 RNLAVAAAYKGWPYFDA-IPNVSGEFTLEAEWFDMGGQGVAYNNIFQANDQPPNFIRLQEPIVKEGKDVPVALQINDVQGSTDPSGKATEGDGEIAVGMGVAGEWMRYTINVPVGGTFETVWRVAVYDASGADVAIETKLTVGTGNEADPCALAGAGGLKIA-ANTGYWKAFETFAGAN-IDLPSGEHILTICLDKVAGFEVNWVRFGQ-APAAGDPAQPA 595          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z3K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 8.050e-32
Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 1
Query:  163 LYKGEPYK----AIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRL---NEDGAK---VTVQINDLSAD--VGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 717
            +Y G PY      +E    LEAE FDVGG+ V Y           N IR    N++G     V V+IN+++       SE  G + VG   +GEW RY++     GT+   WRIA FDPAGG   ++T LT+GTG E DPCAL G+GGLD+   NTG+++TF ++         AG  VLT+C T V  F++N++ F
Sbjct:   21 VYAGHPYDNTLFVLEGEAKLEAENFDVGGQEVAYKKANTNAAPADNAIRQQEPNQEGGPNVPVYVEINNVATSFYAEASEADGELSVGNVASGEWLRYSVLIPTAGTFDTQWRIAAFDPAGGQVAIKTKLTLGTGTEVDPCALDGSGGLDIT-ANTGNWRTFQTFPGAKFTVAEAGTAVLTVCLTQVQGFQLNWVAF 216          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZDG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 6.610e-18
Identity = 69/204 (33.82%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  136 TQRSLDVSPLYKGEPYK----AIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRL---NEDGAK---VTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 717
            T R  ++  LY G PY      +E    LEAE FDVGG+ V Y           N IR    N++G     V V+IN+++                        Y   +  DG           + +GG   ++T LT+GTGAEADPCAL G+GGLD+   NTGD++ F ++         AG  VLT+C T+V  F++N+I F
Sbjct:   42 TVRQRNLQQLYAGYPYDKTVLVLEGEATLEAEDFDVGGQDVAYKKANTNAAPADNAIRPQEPNQEGGPNVPVYVEINNVATSF---------------------YAEASEADG-----------ELSGGQVAIKTKLTLGTGAEADPCALDGSGGLDIT-ANTGDWEMFQTFPGAQFTVTEAGTAVLTVCLTHVQGFQLNWIAF 212          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.340e-11
Identity = 63/198 (31.82%), Postives = 85/198 (42.93%), Query Frame = 1
Query:  196 VPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCA---LPGAGGL-----DLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAI 765
            VPGV++AE FD GGEGV YH          NV R   + A++     D + +V          VG+  +GEW RY++       Y  T   AT  P  G+       T+    E  P A   +P  G +     D A   TG Y  F  Y  + P+ +PAG HVLT+C+ +     IN   F     G    A  +AI
Sbjct:  779 VPGVIQAENFDKGGEGVAYHN--------KNVDRNQGNAARL-----DAAVEVDTLPALQTTFVGLIRSGEWMRYSVNVAAAAYYQMTVTAATAAPLNGM-----AFTLWVDVEGCPAAGQAVPAPGAMAVNVADAAYAGTGSYIVFAPYVVQQPVQLPAGAHVLTLCF-DAGDAAINLDSFAFAACGATAAACAAAI 957          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A098LD84_9BACT (Beta-xylosidase/alpha-L-arabinofuranosidase-like protein n=2 Tax=Sporocytophaga myxococcoides TaxID=153721 RepID=A0A098LD84_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-9
Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 1
Query:  169 KGEPYKAI--EVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAP 756
            K EPYK I  ++PG +EAE +D+GGEG+ YH V             N +  K T++ +++  +    +  GA  +   + GEW  YT+  +  G Y    R+A  D  G  F +E      TG    P  +P          NTG ++ + + K  D I + +GEHV+ + + + +   +NY++F   +   GD  +P
Sbjct:  876 KQEPYKGIAHQIPGRIEAEEYDLGGEGLAYHEV-----------NTNGNEGKATLRNDEVDIEAT-QDSDGAYNIAYILKGEWLEYTVNVVASGNYDLEARVAA-DGDGKTFHIEMDGVDITG----PVNIP----------NTGGWQAWQTLKLND-IRLESGEHVMRIAFDS-DYLNLNYVEFKDIITSIGDFESP 1044          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: UPI001B835604 (carbohydrate-binding protein n=1 Tax=Actinospica durhamensis TaxID=1508375 RepID=UPI001B835604)

HSP 1 Score: 67.8 bits (164), Expect = 9.880e-9
Identity = 71/259 (27.41%), Postives = 110/259 (42.47%), Query Frame = 1
Query:    1 THSLSAHLQLHPGHISIMVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGE-PY--KAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAG-IN---TGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF-GKPVPGGGDTAA 753
            T +  A +  + G  S+    +AC+   +  L     + L+G          +P+   E PY   A  VPG ++AE +D GG+GV Y           NVI +N  G        DL A    ++  G   +G   TG+W +YT+     G+Y  ++R+A                    A  D   L  A G +L+G +N   TG ++T+ +  +   +T+PAG   LT+   N   + INY+ F     P GG  AA
Sbjct:  363 TAATQAGVPTNSGLQSLDQDGTACSADYYLRLTNDGGRMLKGQIALTNVRPTAPVLSAEGPYGGTAAAVPGTVQAENYDTGGQGVAY-----------NVISVNGSGNSYRSDGVDLEAT---TDTGGGYDLGWTATGQWFKYTVNVATAGSYQLSFRVAALS-----------------AVTDAFHLSNASGTNLSGSVNIAATGGWQTWTTVTAT--VTLPAGTQTLTLNQDN-GGWNINYVTFVSSEGPYGGTAAA 587          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z694_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z694_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 2.000e-144
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1
Query:    1 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA 627
            MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA
Sbjct:    1 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA 209          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIY3_9STRA1.450e-171100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0J6_9STRA1.280e-11980.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z301_9STRA1.120e-7657.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C771_9STRA3.680e-5347.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEP6_9STRA6.430e-4246.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3K2_9STRA8.050e-3240.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDG1_9STRA6.610e-1833.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZH56_9STRA3.340e-1131.82CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A098LD84_9BACT1.120e-928.79Beta-xylosidase/alpha-L-arabinofuranosidase-like p... [more]
UPI001B8356049.880e-927.41carbohydrate-binding protein n=1 Tax=Actinospica d... [more]

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BLAST of jgi.p|Trimin1|348274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z694_9STRA2.000e-144100.00DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:243795..244979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348274|estExt_Genemark1.C_Ctg_220030
DescriptionCarbohydrate binding module (family 6)
COG categoryG
Max annot lvl976|Bacteroidetes
EggNOG OGsCOG2335@1|root,COG3507@1|root,COG2335@2|Bacteria,COG3507@2|Bacteria,4NGA5@976|Bacteroidetes,47N1E@768503|Cytophagia
Evalue6.99e-11
Seed ortholog153721.MYP_2103
Hectar predicted targeting categorysignal peptide
TranscriptId348596
TrackFilteredModels1
ProteinId348274
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348274gene_6338Tribonema minus UTEX_B_3156 geneContig_22 243795..244979 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6338_1exon_6338_1Tribonema minus UTEX_B_3156 exonContig_22 243795..243836 +
exon_6338_2exon_6338_2Tribonema minus UTEX_B_3156 exonContig_22 243989..244979 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6338UTR5_6338Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 243795..243836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6338CDS_6338Tribonema minus UTEX_B_3156 CDSContig_22 243998..244825 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6338UTR3_6338Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 244826..244979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348274Trimin1|348274|estExt_Genemark1.C_Ctg_220030Tribonema minus UTEX_B_3156 polypeptideContig_22 243998..244825 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6338 ID=mRNA_6338|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1033bp|location=Sequence derived from alignment at Contig_22:243795..244979+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGCACTCTCTCTCAGCACACCTGCAGCTCCATCCAGGCCATATAAGCAT
CATGGTTGGCAAGAGCGCGTGTACCCTGGCAGTCTTCGCCATGCTGGCAG
CAGCTTCGGCGAAATCGCTGCGTGGCGGATATCAGACGCAGCGCAGCCTG
GACGTCTCTCCCTTGTACAAGGGGGAGCCGTACAAGGCCATCGAGGTCCC
GGGCGTGCTGGAGGCGGAGTTCTTTGACGTCGGCGGTGAGGGCGTCACCT
ACCACACCGTGGTCGTCCCCGTCGTGCTCCCGGCCAACGTCATCCGGCTG
AACGAGGACGGCGCCAAGGTGACCGTGCAGATCAACGATCTCTCAGCGGA
CGTCGGAGGTAGCGAGCCCGCTGGCGCCATCGGCGTCGGCATGGGCGTGA
CTGGCGAGTGGCAGCGGTACACCATCACCGCCTTGCAGGACGGCACGTAC
CTGCCTACGTGGCGCATCGCCACTTTCGACCCAGCGGGCGGCGTGTTTCC
TGTGGAGACCACCCTGACCATCGGCACAGGCGCCGAGGCCGACCCGTGCG
CTCTGCCGGGCGCTGGCGGCCTCGACCTCGCGGGCATCAACACCGGCGAC
TACAAAACATTCATGAGCTACAAGTCGAAGGACCCCATCACCATCCCGGC
CGGCGAGCACGTGCTCACCATGTGCTACACCAACGTCAACACATTCGAGA
TCAACTACATCGACTTCGGCAAGCCCGTGCCTGGCGGCGGCGACACTGCG
GCGCCGAGCGCCATCCCTGGCTCCATGGCGCCGAGCACTGCCCCCAGTGC
TGCCCCCAGCGCGGCACCCAACGCGGCCGGCGGCGCAACGACTTCTTCAC
TGACGGACGACTACACCACGGCGCGCTAGGGAAGCCCCGGCGTGAGCTAG
TGTGATCGCGCGCTGTACCGCCAGCCACGCTGTGTCGGCGCAGTTGCCGG
CACCCGTTTAGCAGCGACCGCTCGACTCGGTGAGGAGCCCCTCTTGAGGG
GTGACGGAGTCGAAAGAGGGGGGCGCAAAGGGG
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protein sequence of jgi.p|Trimin1|348274

>Trimin1|348274|estExt_Genemark1.C_Ctg_220030 ID=Trimin1|348274|estExt_Genemark1.C_Ctg_220030|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVP
GVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSAD
VGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFP
VETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPA
GEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIPGSMAPSTAPSA
APSAAPNAAGGATTSSLTDDYTTAR*
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mRNA from alignment at Contig_22:243795..244979+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6338 ID=mRNA_6338|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1185bp|location=Sequence derived from alignment at Contig_22:243795..244979+ (Tribonema minus UTEX_B_3156 )
ACGCACTCTCTCTCAGCACACCTGCAGCTCCATCCAGGCCATGTAAGTGC GAGCACACAGCAAAGGTGCAATTGCAATGCCGTAGCCAGCCGTCTACAGC GTCAGGCTTGCAGCTTTTTGCACGCTCGTGAGATCTTCATGCGCAGGGCA GCCAACTAACTAACTGGCACGTTGCATCGCGCTCTCACTTTCAGATAAGC ATCATGGTTGGCAAGAGCGCGTGTACCCTGGCAGTCTTCGCCATGCTGGC AGCAGCTTCGGCGAAATCGCTGCGTGGCGGATATCAGACGCAGCGCAGCC TGGACGTCTCTCCCTTGTACAAGGGGGAGCCGTACAAGGCCATCGAGGTC CCGGGCGTGCTGGAGGCGGAGTTCTTTGACGTCGGCGGTGAGGGCGTCAC CTACCACACCGTGGTCGTCCCCGTCGTGCTCCCGGCCAACGTCATCCGGC TGAACGAGGACGGCGCCAAGGTGACCGTGCAGATCAACGATCTCTCAGCG GACGTCGGAGGTAGCGAGCCCGCTGGCGCCATCGGCGTCGGCATGGGCGT GACTGGCGAGTGGCAGCGGTACACCATCACCGCCTTGCAGGACGGCACGT ACCTGCCTACGTGGCGCATCGCCACTTTCGACCCAGCGGGCGGCGTGTTT CCTGTGGAGACCACCCTGACCATCGGCACAGGCGCCGAGGCCGACCCGTG CGCTCTGCCGGGCGCTGGCGGCCTCGACCTCGCGGGCATCAACACCGGCG ACTACAAAACATTCATGAGCTACAAGTCGAAGGACCCCATCACCATCCCG GCCGGCGAGCACGTGCTCACCATGTGCTACACCAACGTCAACACATTCGA GATCAACTACATCGACTTCGGCAAGCCCGTGCCTGGCGGCGGCGACACTG CGGCGCCGAGCGCCATCCCTGGCTCCATGGCGCCGAGCACTGCCCCCAGT GCTGCCCCCAGCGCGGCACCCAACGCGGCCGGCGGCGCAACGACTTCTTC ACTGACGGACGACTACACCACGGCGCGCTAGGGAAGCCCCGGCGTGAGCT AGTGTGATCGCGCGCTGTACCGCCAGCCACGCTGTGTCGGCGCAGTTGCC GGCACCCGTTTAGCAGCGACCGCTCGACTCGGTGAGGAGCCCCTCTTGAG GGGTGACGGAGTCGAAAGAGGGGGGCGCAAAGGGG
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Coding sequence (CDS) from alignment at Contig_22:243795..244979+

>mRNA_6338 ID=mRNA_6338|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_22:243795..244979+ (Tribonema minus UTEX_B_3156 )
ATGGTTGGCAAGAGCGCGTGTACCCTGGCAGTCTTCGCCATGCTGGCAGC
AGCTTCGGCGAAATCGCTGCGTGGCGGATATCAGACGCAGCGCAGCCTGG
ACGTCTCTCCCTTGTACAAGGGGGAGCCGTACAAGGCCATCGAGGTCCCG
GGCGTGCTGGAGGCGGAGTTCTTTGACGTCGGCGGTGAGGGCGTCACCTA
CCACACCGTGGTCGTCCCCGTCGTGCTCCCGGCCAACGTCATCCGGCTGA
ACGAGGACGGCGCCAAGGTGACCGTGCAGATCAACGATCTCTCAGCGGAC
GTCGGAGGTAGCGAGCCCGCTGGCGCCATCGGCGTCGGCATGGGCGTGAC
TGGCGAGTGGCAGCGGTACACCATCACCGCCTTGCAGGACGGCACGTACC
TGCCTACGTGGCGCATCGCCACTTTCGACCCAGCGGGCGGCGTGTTTCCT
GTGGAGACCACCCTGACCATCGGCACAGGCGCCGAGGCCGACCCGTGCGC
TCTGCCGGGCGCTGGCGGCCTCGACCTCGCGGGCATCAACACCGGCGACT
ACAAAACATTCATGAGCTACAAGTCGAAGGACCCCATCACCATCCCGGCC
GGCGAGCACGTGCTCACCATGTGCTACACCAACGTCAACACATTCGAGAT
CAACTACATCGACTTCGGCAAGCCCGTGCCTGGCGGCGGCGACACTGCGG
CGCCGAGCGCCATCCCTGGCTCCATGGCGCCGAGCACTGCCCCCAGTGCT
GCCCCCAGCGCGGCACCCAACGCGGCCGGCGGCGCAACGACTTCTTCACT
GACGGACGACTACACCACGGCGCGCTAG
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