Trimin1|348274|estExt_Genemark1.C_Ctg_220030 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|348274
Unique NameTrimin1|348274|estExt_Genemark1.C_Ctg_220030
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length276
Homology
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A836CIY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY3_9STRA)

HSP 1 Score: 486 bits (1251), Expect = 1.410e-172
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0
Query:    1 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR 275
            MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR
Sbjct:    1 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR 275          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z0J6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J6_9STRA)

HSP 1 Score: 353 bits (905), Expect = 1.000e-120
Identity = 180/223 (80.72%), Postives = 194/223 (87.00%), Query Frame = 0
Query:    1 MVGKSACTLAVFAMLAAA-SAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 222
            M+G+  C+LA+ A+ A A SAKSLRG     R   VSP Y G PY+AIE+PGVLEAEFFDVGGEGVTYHT  VPVVLP NVIRLNEDGAKVTVQINDLSA V GSEPAGAIGVGMGVTGEWQRYT+TAL+DGTYLPTWRIAT+DP  GVFPVETTLTIGTGAEADPCALPGAGGLDLAG+NTG YKTF SY SKDPI IPAGEHVLT+CY NVNTFE+N+IDF
Sbjct:    1 MIGQITCSLALVAVFAVATSAKSLRG--HVPRKALVSPAYAGVPYEAIEIPGVLEAEFFDVGGEGVTYHTDAVPVVLPPNVIRLNEDGAKVTVQINDLSAAVAGSEPAGAIGVGMGVTGEWQRYTVTALEDGTYLPTWRIATYDPTFGVFPVETTLTIGTGAEADPCALPGAGGLDLAGVNTGGYKTFESYTSKDPIAIPAGEHVLTVCYVNVNTFELNFIDF 221          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z301_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z301_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.090e-77
Identity = 140/245 (57.14%), Postives = 168/245 (68.57%), Query Frame = 0
Query:    1 MVGKSACTLAVFAMLAA-ASAKSLRGGYQTQRSLDVSPLYKGEPYKA--IEVPGVLEAEFFDVGGEGVTYHTVVVPVV---LPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCA--LPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSA 237
            M+G+S CT+A+F +L A ASAKSLRGG   QR L +SP Y+G PY+A  I +PG+L+ E FD GGEGV YH +  P      P NVIR +       +QIND   DV GSE  G IG+GMG+ GEW RYTI A +  TY P WRIAT+DP GG   V+T L +GTGAEA+PC   LP AGGLD+  +NTG YKTF SY SKDPITIP G HVLT+C ++V  FE+NYIDF + V  GG T APSA
Sbjct:    1 MIGQSTCTVALFCILCACASAKSLRGGRHQQRRLKISPDYQGTPYEANPIAIPGMLQVELFDKGGEGVGYHDIKDPAAKAKAPPNVIRQDSP-----IQINDEGPDVNGSEAVGQIGIGMGIGGEWLRYTIEATETATYRPIWRIATYDPKGGDNVVQTNLALGTGAEANPCTGDLPVAGGLDIK-VNTGGYKTFKSYTSKDPITIPKGAHVLTVCLSDVVDFEMNYIDF-EVVGEGGATEAPSA 238          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A836C771_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C771_9STRA)

HSP 1 Score: 191 bits (486), Expect = 6.140e-54
Identity = 117/243 (48.15%), Postives = 143/243 (58.85%), Query Frame = 0
Query:    1 MVGKSACTLAVFAMLAAASAKS------LRGGYQTQRSLDVSPLYK---GEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPV--VLPANVIRLNEDGAKVTVQINDLSADVG--GSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPG----AGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPV 226
            + G  A T+A  A L AA A +        GG    RSL V P Y    G PY    +PGVLEAE+FD+GGEG+ YH + +     +P N +R+ EDG  V +QIND+S       SE AG + VGMGVTGEW RYT+     G +  TWRIA  DP G + PV T +  GTGAEADPC        AGGLDL G+NT  YK F  + S D I +PAGEHVL +C T+V  FE+NYI F +PV
Sbjct:   84 VTGTRARTIAGGAALCAAMANAATMVVDFEGGQA--RSLLVDPAYVTLGGTPYVPTTLPGVLEAEYFDMGGEGIAYHNIELEADATMPENKLRVEEDGEPVALQINDVSGATNPDASEAAGELAVGMGVTGEWMRYTVDVPAAGVFTATWRIAVHDPNGALLPVVTKIVRGTGAEADPCKEDAQHVAAGGLDLPGVNTLGYKQFGDFVSADLIALPAGEHVLAVCLTDVAAFELNYISF-RPV 323          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZEP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 8.880e-43
Identity = 102/221 (46.15%), Postives = 133/221 (60.18%), Query Frame = 0
Query:   31 RSLDVSPLYKGEPYKAIEVPGV-----LEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAK------VTVQINDL--SADVGG--SEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPS 236
            R+L V+  YKG PY    +P V     LEAE+FD+GG+GV Y+ +      P N IRL E   K      V +QIND+  S D  G  +E  G I VGMGV GEW RYTI     GT+   WR+A +D +G    +ET LT+GTG EADPCAL GAGGL +A  NTG +K F ++   + I +P+GEH+LT+C   V  FE+N++ FG+  P  GD A P+
Sbjct:  379 RNLAVAAAYKGWPYFDA-IPNVSGEFTLEAEWFDMGGQGVAYNNIFQANDQPPNFIRLQEPIVKEGKDVPVALQINDVQGSTDPSGKATEGDGEIAVGMGVAGEWMRYTINVPVGGTFETVWRVAVYDASGADVAIETKLTVGTGNEADPCALAGAGGLKIA-ANTGYWKAFETFAGAN-IDLPSGEHILTICLDKVAGFEVNWVRFGQ-APAAGDPAQPA 595          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z3K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.470e-32
Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 0
Query:   38 LYKGEPYK----AIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRL---NEDGAK---VTVQINDLSAD--VGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 222
            +Y G PY      +E    LEAE FDVGG+ V Y           N IR    N++G     V V+IN+++       SE  G + VG   +GEW RY++     GT+   WRIA FDPAGG   ++T LT+GTG E DPCAL G+GGLD+   NTG+++TF ++         AG  VLT+C T V  F++N++ F
Sbjct:   21 VYAGHPYDNTLFVLEGEAKLEAENFDVGGQEVAYKKANTNAAPADNAIRQQEPNQEGGPNVPVYVEINNVATSFYAEASEADGELSVGNVASGEWLRYSVLIPTAGTFDTQWRIAAFDPAGGQVAIKTKLTLGTGTEVDPCALDGSGGLDIT-ANTGNWRTFQTFPGAKFTVAEAGTAVLTVCLTQVQGFQLNWVAF 216          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZDG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.060e-18
Identity = 69/204 (33.82%), Postives = 96/204 (47.06%), Query Frame = 0
Query:   29 TQRSLDVSPLYKGEPYK----AIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRL---NEDGAK---VTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 222
            T R  ++  LY G PY      +E    LEAE FDVGG+ V Y           N IR    N++G     V V+IN+++                        Y   +  DG           + +GG   ++T LT+GTGAEADPCAL G+GGLD+   NTGD++ F ++         AG  VLT+C T+V  F++N+I F
Sbjct:   42 TVRQRNLQQLYAGYPYDKTVLVLEGEATLEAEDFDVGGQDVAYKKANTNAAPADNAIRPQEPNQEGGPNVPVYVEINNVATSF---------------------YAEASEADG-----------ELSGGQVAIKTKLTLGTGAEADPCALDGSGGLDIT-ANTGDWEMFQTFPGAQFTVTEAGTAVLTVCLTHVQGFQLNWIAF 212          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-11
Identity = 63/198 (31.82%), Postives = 85/198 (42.93%), Query Frame = 0
Query:   49 VPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCA---LPGAGGL-----DLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAI 238
            VPGV++AE FD GGEGV YH          NV R   + A++     D + +V          VG+  +GEW RY++       Y  T   AT  P  G+       T+    E  P A   +P  G +     D A   TG Y  F  Y  + P+ +PAG HVLT+C+ +     IN   F     G    A  +AI
Sbjct:  779 VPGVIQAENFDKGGEGVAYHN--------KNVDRNQGNAARL-----DAAVEVDTLPALQTTFVGLIRSGEWMRYSVNVAAAAYYQMTVTAATAAPLNGM-----AFTLWVDVEGCPAAGQAVPAPGAMAVNVADAAYAGTGSYIVFAPYVVQQPVQLPAGAHVLTLCF-DAGDAAINLDSFAFAACGATAAACAAAI 957          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A098LD84_9BACT (Beta-xylosidase/alpha-L-arabinofuranosidase-like protein n=2 Tax=Sporocytophaga myxococcoides TaxID=153721 RepID=A0A098LD84_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 4.260e-10
Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 0
Query:   40 KGEPYKAI--EVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAP 235
            K EPYK I  ++PG +EAE +D+GGEG+ YH V             N +  K T++ +++  +    +  GA  +   + GEW  YT+  +  G Y    R+A  D  G  F +E      TG    P  +P          NTG ++ + + K  D I + +GEHV+ + + + +   +NY++F   +   GD  +P
Sbjct:  876 KQEPYKGIAHQIPGRIEAEEYDLGGEGLAYHEV-----------NTNGNEGKATLRNDEVDIEAT-QDSDGAYNIAYILKGEWLEYTVNVVASGNYDLEARVAA-DGDGKTFHIEMDGVDITG----PVNIP----------NTGGWQAWQTLKLND-IRLESGEHVMRIAFDS-DYLNLNYVEFKDIITSIGDFESP 1044          
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: UPI001B835604 (carbohydrate-binding protein n=1 Tax=Actinospica durhamensis TaxID=1508375 RepID=UPI001B835604)

HSP 1 Score: 67.4 bits (163), Expect = 5.510e-9
Identity = 67/238 (28.15%), Postives = 102/238 (42.86%), Query Frame = 0
Query:    5 SACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGE-PY--KAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAG-IN---TGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF-GKPVPGGGDTAA 234
            +AC+   +  L     + L+G          +P+   E PY   A  VPG ++AE +D GG+GV Y           NVI +N  G        DL A    ++  G   +G   TG+W +YT+     G+Y  ++R+A                    A  D   L  A G +L+G +N   TG ++T+ +  +   +T+PAG   LT+   N   + INY+ F     P GG  AA
Sbjct:  384 TACSADYYLRLTNDGGRMLKGQIALTNVRPTAPVLSAEGPYGGTAAAVPGTVQAENYDTGGQGVAY-----------NVISVNGSGNSYRSDGVDLEAT---TDTGGGYDLGWTATGQWFKYTVNVATAGSYQLSFRVAALS-----------------AVTDAFHLSNASGTNLSGSVNIAATGGWQTWTTVTAT--VTLPAGTQTLTLNQDN-GGWNINYVTFVSSEGPYGGTAAA 587          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIY3_9STRA1.410e-172100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0J6_9STRA1.000e-12080.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z301_9STRA1.090e-7757.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C771_9STRA6.140e-5448.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEP6_9STRA8.880e-4346.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3K2_9STRA1.470e-3240.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDG1_9STRA2.060e-1833.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZH56_9STRA1.170e-1131.82CBM6 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A098LD84_9BACT4.260e-1028.79Beta-xylosidase/alpha-L-arabinofuranosidase-like p... [more]
UPI001B8356045.510e-928.15carbohydrate-binding protein n=1 Tax=Actinospica d... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.260coord: 40..223
e-value: 1.0E-17
score: 66.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..275
IPR008979Galactose-binding-like domain superfamilySUPERFAMILY49785Galactose-binding domain-likecoord: 48..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:243998..244825 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348274mRNA_6338Tribonema minus UTEX_B_3156 mRNAContig_22 243795..244979 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|348274|estExt_Genemark1.C_Ctg_220030 ID=Trimin1|348274|estExt_Genemark1.C_Ctg_220030|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp
MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVP
GVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSAD
VGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFP
VETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPA
GEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIPGSMAPSTAPSA
APSAAPNAAGGATTSSLTDDYTTAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like_sf