mRNA_6338 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A836CIY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY3_9STRA) HSP 1 Score: 486 bits (1252), Expect = 1.450e-171 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1 Query: 52 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR 876 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR Sbjct: 1 MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAIXXXXXXXXXXXXXXXXXXXXXXXXXTSSLTDDYTTAR 275
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z0J6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J6_9STRA) HSP 1 Score: 353 bits (905), Expect = 1.280e-119 Identity = 180/223 (80.72%), Postives = 194/223 (87.00%), Query Frame = 1 Query: 52 MVGKSACTLAVFAMLAAA-SAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 717 M+G+ C+LA+ A+ A A SAKSLRG R VSP Y G PY+AIE+PGVLEAEFFDVGGEGVTYHT VPVVLP NVIRLNEDGAKVTVQINDLSA V GSEPAGAIGVGMGVTGEWQRYT+TAL+DGTYLPTWRIAT+DP GVFPVETTLTIGTGAEADPCALPGAGGLDLAG+NTG YKTF SY SKDPI IPAGEHVLT+CY NVNTFE+N+IDF Sbjct: 1 MIGQITCSLALVAVFAVATSAKSLRG--HVPRKALVSPAYAGVPYEAIEIPGVLEAEFFDVGGEGVTYHTDAVPVVLPPNVIRLNEDGAKVTVQINDLSAAVAGSEPAGAIGVGMGVTGEWQRYTVTALEDGTYLPTWRIATYDPTFGVFPVETTLTIGTGAEADPCALPGAGGLDLAGVNTGGYKTFESYTSKDPIAIPAGEHVLTVCYVNVNTFELNFIDF 221
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z301_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z301_9STRA) HSP 1 Score: 245 bits (626), Expect = 1.120e-76 Identity = 140/245 (57.14%), Postives = 168/245 (68.57%), Query Frame = 1 Query: 52 MVGKSACTLAVFAMLAA-ASAKSLRGGYQTQRSLDVSPLYKGEPYKA--IEVPGVLEAEFFDVGGEGVTYHTVVVPVV---LPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCA--LPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSA 762 M+G+S CT+A+F +L A ASAKSLRGG QR L +SP Y+G PY+A I +PG+L+ E FD GGEGV YH + P P NVIR + +QIND DV GSE G IG+GMG+ GEW RYTI A + TY P WRIAT+DP GG V+T L +GTGAEA+PC LP AGGLD+ +NTG YKTF SY SKDPITIP G HVLT+C ++V FE+NYIDF + V GG T APSA Sbjct: 1 MIGQSTCTVALFCILCACASAKSLRGGRHQQRRLKISPDYQGTPYEANPIAIPGMLQVELFDKGGEGVGYHDIKDPAAKAKAPPNVIRQDSP-----IQINDEGPDVNGSEAVGQIGIGMGIGGEWLRYTIEATETATYRPIWRIATYDPKGGDNVVQTNLALGTGAEANPCTGDLPVAGGLDIK-VNTGGYKTFKSYTSKDPITIPKGAHVLTVCLSDVVDFEMNYIDF-EVVGEGGATEAPSA 238
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A836C771_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C771_9STRA) HSP 1 Score: 192 bits (487), Expect = 3.680e-53 Identity = 117/244 (47.95%), Postives = 144/244 (59.02%), Query Frame = 1 Query: 49 IMVGKSACTLAVFAMLAAASAKS------LRGGYQTQRSLDVSPLYK---GEPYKAIEVPGVLEAEFFDVGGEGVTYHTVVVPV--VLPANVIRLNEDGAKVTVQINDLSADVG--GSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPG----AGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPV 729 ++ G A T+A A L AA A + GG RSL V P Y G PY +PGVLEAE+FD+GGEG+ YH + + +P N +R+ EDG V +QIND+S SE AG + VGMGVTGEW RYT+ G + TWRIA DP G + PV T + GTGAEADPC AGGLDL G+NT YK F + S D I +PAGEHVL +C T+V FE+NYI F +PV Sbjct: 83 MVTGTRARTIAGGAALCAAMANAATMVVDFEGGQA--RSLLVDPAYVTLGGTPYVPTTLPGVLEAEYFDMGGEGIAYHNIELEADATMPENKLRVEEDGEPVALQINDVSGATNPDASEAAGELAVGMGVTGEWMRYTVDVPAAGVFTATWRIAVHDPNGALLPVVTKIVRGTGAEADPCKEDAQHVAAGGLDLPGVNTLGYKQFGDFVSADLIALPAGEHVLAVCLTDVAAFELNYISF-RPV 323
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZEP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP6_9STRA) HSP 1 Score: 164 bits (415), Expect = 6.430e-42 Identity = 102/221 (46.15%), Postives = 133/221 (60.18%), Query Frame = 1 Query: 142 RSLDVSPLYKGEPYKAIEVPGV-----LEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAK------VTVQINDL--SADVGG--SEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPS 759 R+L V+ YKG PY +P V LEAE+FD+GG+GV Y+ + P N IRL E K V +QIND+ S D G +E G I VGMGV GEW RYTI GT+ WR+A +D +G +ET LT+GTG EADPCAL GAGGL +A NTG +K F ++ + I +P+GEH+LT+C V FE+N++ FG+ P GD A P+ Sbjct: 379 RNLAVAAAYKGWPYFDA-IPNVSGEFTLEAEWFDMGGQGVAYNNIFQANDQPPNFIRLQEPIVKEGKDVPVALQINDVQGSTDPSGKATEGDGEIAVGMGVAGEWMRYTINVPVGGTFETVWRVAVYDASGADVAIETKLTVGTGNEADPCALAGAGGLKIA-ANTGYWKAFETFAGAN-IDLPSGEHILTICLDKVAGFEVNWVRFGQ-APAAGDPAQPA 595
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z3K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K2_9STRA) HSP 1 Score: 130 bits (328), Expect = 8.050e-32 Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 1 Query: 163 LYKGEPYK----AIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRL---NEDGAK---VTVQINDLSAD--VGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 717 +Y G PY +E LEAE FDVGG+ V Y N IR N++G V V+IN+++ SE G + VG +GEW RY++ GT+ WRIA FDPAGG ++T LT+GTG E DPCAL G+GGLD+ NTG+++TF ++ AG VLT+C T V F++N++ F Sbjct: 21 VYAGHPYDNTLFVLEGEAKLEAENFDVGGQEVAYKKANTNAAPADNAIRQQEPNQEGGPNVPVYVEINNVATSFYAEASEADGELSVGNVASGEWLRYSVLIPTAGTFDTQWRIAAFDPAGGQVAIKTKLTLGTGTEVDPCALDGSGGLDIT-ANTGNWRTFQTFPGAKFTVAEAGTAVLTVCLTQVQGFQLNWVAF 216
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZDG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG1_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 6.610e-18 Identity = 69/204 (33.82%), Postives = 96/204 (47.06%), Query Frame = 1 Query: 136 TQRSLDVSPLYKGEPYK----AIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRL---NEDGAK---VTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF 717 T R ++ LY G PY +E LEAE FDVGG+ V Y N IR N++G V V+IN+++ Y + DG + +GG ++T LT+GTGAEADPCAL G+GGLD+ NTGD++ F ++ AG VLT+C T+V F++N+I F Sbjct: 42 TVRQRNLQQLYAGYPYDKTVLVLEGEATLEAEDFDVGGQDVAYKKANTNAAPADNAIRPQEPNQEGGPNVPVYVEINNVATSF---------------------YAEASEADG-----------ELSGGQVAIKTKLTLGTGAEADPCALDGSGGLDIT-ANTGDWEMFQTFPGAQFTVTEAGTAVLTVCLTHVQGFQLNWIAF 212
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.340e-11 Identity = 63/198 (31.82%), Postives = 85/198 (42.93%), Query Frame = 1 Query: 196 VPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCA---LPGAGGL-----DLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAPSAI 765 VPGV++AE FD GGEGV YH NV R + A++ D + +V VG+ +GEW RY++ Y T AT P G+ T+ E P A +P G + D A TG Y F Y + P+ +PAG HVLT+C+ + IN F G A +AI Sbjct: 779 VPGVIQAENFDKGGEGVAYHN--------KNVDRNQGNAARL-----DAAVEVDTLPALQTTFVGLIRSGEWMRYSVNVAAAAYYQMTVTAATAAPLNGM-----AFTLWVDVEGCPAAGQAVPAPGAMAVNVADAAYAGTGSYIVFAPYVVQQPVQLPAGAHVLTLCF-DAGDAAINLDSFAFAACGATAAACAAAI 957
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A098LD84_9BACT (Beta-xylosidase/alpha-L-arabinofuranosidase-like protein n=2 Tax=Sporocytophaga myxococcoides TaxID=153721 RepID=A0A098LD84_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 1.120e-9 Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 1 Query: 169 KGEPYKAI--EVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAGINTGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDFGKPVPGGGDTAAP 756 K EPYK I ++PG +EAE +D+GGEG+ YH V N + K T++ +++ + + GA + + GEW YT+ + G Y R+A D G F +E TG P +P NTG ++ + + K D I + +GEHV+ + + + + +NY++F + GD +P Sbjct: 876 KQEPYKGIAHQIPGRIEAEEYDLGGEGLAYHEV-----------NTNGNEGKATLRNDEVDIEAT-QDSDGAYNIAYILKGEWLEYTVNVVASGNYDLEARVAA-DGDGKTFHIEMDGVDITG----PVNIP----------NTGGWQAWQTLKLND-IRLESGEHVMRIAFDS-DYLNLNYVEFKDIITSIGDFESP 1044
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: UPI001B835604 (carbohydrate-binding protein n=1 Tax=Actinospica durhamensis TaxID=1508375 RepID=UPI001B835604) HSP 1 Score: 67.8 bits (164), Expect = 9.880e-9 Identity = 71/259 (27.41%), Postives = 110/259 (42.47%), Query Frame = 1 Query: 1 THSLSAHLQLHPGHISIMVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGE-PY--KAIEVPGVLEAEFFDVGGEGVTYHTVVVPVVLPANVIRLNEDGAKVTVQINDLSADVGGSEPAGAIGVGMGVTGEWQRYTITALQDGTYLPTWRIATFDPAGGVFPVETTLTIGTGAEADPCALPGAGGLDLAG-IN---TGDYKTFMSYKSKDPITIPAGEHVLTMCYTNVNTFEINYIDF-GKPVPGGGDTAA 753 T + A + + G S+ +AC+ + L + L+G +P+ E PY A VPG ++AE +D GG+GV Y NVI +N G DL A ++ G +G TG+W +YT+ G+Y ++R+A A D L A G +L+G +N TG ++T+ + + +T+PAG LT+ N + INY+ F P GG AA Sbjct: 363 TAATQAGVPTNSGLQSLDQDGTACSADYYLRLTNDGGRMLKGQIALTNVRPTAPVLSAEGPYGGTAAAVPGTVQAENYDTGGQGVAY-----------NVISVNGSGNSYRSDGVDLEAT---TDTGGGYDLGWTATGQWFKYTVNVATAGSYQLSFRVAALS-----------------AVTDAFHLSNASGTNLSGSVNIAATGGWQTWTTVTAT--VTLPAGTQTLTLNQDN-GGWNINYVTFVSSEGPYGGTAAA 587
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Match: A0A835Z694_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z694_9STRA) HSP 1 Score: 415 bits (1067), Expect = 2.000e-144 Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 Query: 1 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA 627 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA Sbjct: 1 MQPDEIQRLALPAEFAVPGVSEWPGGRAQQYEVAEPLVRALLRKLDRAANGGVVSRLKTQVTSREDYTALVLSEAPERKDDCAAILNLTAEAALEAQTAAFLKEMGPRLVVLVNPGWNAPSDFGFFARRRAETLLAPFLETYTLVKLTCRSQKVALLRSWPGPWMLYAMAGEDRGAATKWDQVAVLDREDRPSYRECEKLLEAKASAAA 209 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|348274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6338 ID=mRNA_6338|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1033bp|location=Sequence derived from alignment at Contig_22:243795..244979+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACGCACTCTCTCTCAGCACACCTGCAGCTCCATCCAGGCCATATAAGCATback to top protein sequence of jgi.p|Trimin1|348274 >Trimin1|348274|estExt_Genemark1.C_Ctg_220030 ID=Trimin1|348274|estExt_Genemark1.C_Ctg_220030|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=276bp MVGKSACTLAVFAMLAAASAKSLRGGYQTQRSLDVSPLYKGEPYKAIEVPback to top mRNA from alignment at Contig_22:243795..244979+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6338 ID=mRNA_6338|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1185bp|location=Sequence derived from alignment at Contig_22:243795..244979+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_22:243795..244979+ >mRNA_6338 ID=mRNA_6338|Name=jgi.p|Trimin1|348274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=828bp|location=Sequence derived from alignment at Contig_22:243795..244979+ (Tribonema minus UTEX_B_3156 )back to top |