mRNA_6030 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A835YRS2_9STRA (Anticodon-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS2_9STRA) HSP 1 Score: 370 bits (950), Expect = 2.200e-127 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1
Query: 43 MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAKRDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGKRKSGHRKG 765
MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAKRDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGKRKSGHRKG
Sbjct: 1 MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAKRDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGKRKSGHRKG 241
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A835ZQ15_9STRA (Anticodon-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ15_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.300e-41 Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGN----CSMRMVNAGHLTATEVLEAPA-----DGGALGPHGRISSA--KELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQ 564
VG RV+V E +EG VYT D T MLVLQC+ G CSMRM++ H+ A V++A A D A ++ + KEL +KE KA+R+AERA++Q+N A+ E QA+ AL++TMDCEW +S++++DQV++DPPY C L GCP ALER+QKVLEGERRK+ Q
Sbjct: 9 VGDRVKVTLSSGEIIEGLVYTEDRMTNMLVLQCSGAAASGAGAAATCSMRMLSREHIIALLVVQAQAWDWTGDDAATFSVAKLPTVTPKELHKKEEKALREAERAMAQLNARATLEGQALCFALSKTMDCEWDNVSLIVFDQVRVDPPYTANDCKMLPGCPPAALERIQKVLEGERRKMHQ 189
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A2D4BK89_PYTIN (AD domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK89_PYTIN) HSP 1 Score: 107 bits (266), Expect = 8.530e-25 Identity = 74/169 (43.79%), Postives = 92/169 (54.44%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 558
VGA+VRV TC +ET EG ++T+D L+L+ PV R+ L EV+E AP+D P S +L R E K AERAL+ I S EAQAIFDAL +TM C W G SI + + V I PPY P CV + L RV++VLEGER KL
Sbjct: 19 VGAKVRVTTCHDETFEGVIFTLDAVANFLILEERPVD-APAKSKTRIFQMEALKKIEVVEKAPSDANLALPS---VSEDDLLRLEQKNKGIAERALASIGKGVSAEAQAIFDALNKTMPCAWEGQSIRVMEDVLIQPPYEPQNCVSAN---TQVLARVKRVLEGERNKL 180
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: H3H3B6_PHYRM (AD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3B6_PHYRM) HSP 1 Score: 105 bits (263), Expect = 2.240e-24 Identity = 75/174 (43.10%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 573
VGA+VRV T ET EG ++TVD LVL+ G R+ L EVLE APA P + S +EL+R E + AERAL+ I +GEAQ IFDAL +TM CEW G +I + +V I PPY P CV + L RV+KVLEGE+ KL ++ K
Sbjct: 24 VGAKVRVITSGQETFEGEIFTVDTVANFLVLE----EQDGAKSKTRIFQLEALQKVEVLEPAPAGLQLTLP---VISDEELQRMEQRNKGVAERALASIGQGVTGEAQTIFDALNKTMPCEWEGANIRVMGEVVIKPPYHPQNCVSTN---TQVLSRVKKVLEGEKSKLKKITK 187
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: D0NJK2_PHYIT (AD domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=D0NJK2_PHYIT) HSP 1 Score: 104 bits (260), Expect = 6.020e-24 Identity = 77/174 (44.25%), Postives = 94/174 (54.02%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 573
VGA+VRV T ET EG ++T+D LVL+ G C R+ L EVLE APA G + ISS EL R E + AERAL+ I S EAQ IFDAL +TM CEW G +I + +V I PPY P CV + L RV+KVLEGE+ KL + K
Sbjct: 23 VGAKVRVVTAAKETFEGVIFTLDPVANFLVLE----EQDGAKCKTRIFQLKALQKVEVLEHAPA--GLMLTLPAISS-DELLRMEQRNKVLAERALASIGQGVSSEAQVIFDALNKTMPCEWEGANIRVMGEVVIKPPYHPQNCVSAN---TQVLSRVKKVLEGEKSKLKKAKK 186
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A8K1CPS1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPS1_PYTOL) HSP 1 Score: 103 bits (256), Expect = 2.210e-23 Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQ-CTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALG-PHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 573
VGA+VRV T L TVEG ++T+D L+L+ + P + ++A L + EV+E A L PH S +L R E K AERAL+ I N S EAQAIFDAL +TM C W G +I + ++V I PPY P CV + L R++KVLEGE+ KL + +K
Sbjct: 15 VGAKVRVVTSLEVTVEGVIFTLDPIANFLILEESSSETPAKSKTHIFQMDA--LKSIEVIEKAAGDANLNLPH---ISEDDLLRLEQKNKGIAERALASIGENVSAEAQAIFDALNKTMPCHWEGQNIRVMEEVLIKPPYQPQNCVSSN---TQVLSRIKKVLEGEKNKLRKASK 181
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A0P1A745_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A745_PLAHL) HSP 1 Score: 102 bits (254), Expect = 4.350e-23 Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 558
VGA++RV T +ET EGTV+T+D LVL+ G + + L EVLE G L + SA EL+R E + AE+AL+ I +GEAQAIFDAL +TM C+W G +I + V I PPY P C+ + L RV+KVLEGE+ KL
Sbjct: 21 VGAKIRVETNKHETFEGTVFTLDPVANFLVLE----ERDGAKLRTLIFHCNALQKVEVLEEAPSGLMLKLP--VISADELQRLEQQNKEKAEKALASIGQGVTGEAQAIFDALNKTMPCKWEGNAIRVMGDVTIKPPYHPQNCMSTNNL---VLSRVKKVLEGEKSKL 179
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A5D6Y5E4_9STRA (AD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5E4_9STRA) HSP 1 Score: 102 bits (253), Expect = 7.260e-23 Identity = 76/174 (43.68%), Postives = 94/174 (54.02%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVL-EAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 573
VGARVRV T +ET EG ++TVD L L+ VG R+ L EVL +APAD P+ + +L R E + AERAL+ I S EAQ IFDAL +TM CEW G +I + V I PPY P CV + A AL RV+KVLEGE+ KL + K
Sbjct: 25 VGARVRVLTQADETFEGAIFTVDPVASFLFLEEYAADSVGKG-KTRIFQLEALKKIEVLAKAPADANVGLPN---ITEDDLLRLEQRNKSVAERALASIGKGVSTEAQTIFDALNKTMPCEWEGQTIRVMTDVVIKPPYQPQNCVSEN---AQALSRVKKVLEGEKNKLKKAKK 191
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: K3WYV9_GLOUD (AD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYV9_GLOUD) HSP 1 Score: 97.8 bits (242), Expect = 3.020e-21 Identity = 72/174 (41.38%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 573
+GA+VRV T E EG ++T+D L+L+ N RM L E+LE APAD A P + +L R E + AERAL+ I + S EAQAIFDAL +TM CEW G +I + V I PPY P CV L+RV+KVLEGE+ KL + K
Sbjct: 26 IGAKVRVLTQAAEAFEGVIFTIDPIASFLILEERFADAPAKN-KTRMFQIDALKKIELLEKAPADVNANLPS---INEDDLLRLEQRNKDIAERALASIGKDVSSEAQAIFDALNKTMPCEWEGTNIRVMGDVLIKPPYQPQNCV---STKPQVLDRVKKVLEGEKNKLKRAKK 192
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A3M6VNF5_9STRA (AD domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNF5_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 4.320e-21 Identity = 74/171 (43.27%), Postives = 93/171 (54.39%), Query Frame = 1
Query: 55 VGARVRVWTCLNETVEGTVYTVDHTTGMLVL--QCTPVPPVGG-NCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 558
VGA+V V T ET EG ++TVD LVL Q + G R+ L EVL+ PA G IS ++L R E + AERAL+ I SGEAQAIFDAL +TM CEW G++I + +V I PPY P +CV + L RV+KVLEGE+ KL
Sbjct: 23 VGAKVSVLTNSQETFEGVIFTVDPVANFLVLVDQMLTIEEQNGIKSKTRIFQLEALQKIEVLD-PAPVGLQLTLPAISE-EDLMRAEQRNKGLAERALASIGQGVSGEAQAIFDALNKTMPCEWEGVNIRVMGEVVIKPPYQPQKCVSAN---TQVLSRVKKVLEGEKIKL 188 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6030 ID=mRNA_6030|Name=jgi.p|Trimin1|349505|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=809bp|location=Sequence derived from alignment at Contig_45:16718..19265+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCGGCAGGCGTATCGACGGCATTGACAGTATTCTGGGAAGCATGGATCTback to top protein sequence of jgi.p|Trimin1|349505 >Trimin1|349505|estExt_Genemark1.C_Ctg_450003 ID=Trimin1|349505|estExt_Genemark1.C_Ctg_450003|Name=jgi.p|Trimin1|349505|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=242bp MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRback to top mRNA from alignment at Contig_45:16718..19265+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6030 ID=mRNA_6030|Name=jgi.p|Trimin1|349505|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2548bp|location=Sequence derived from alignment at Contig_45:16718..19265+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_45:16718..19265+ >mRNA_6030 ID=mRNA_6030|Name=jgi.p|Trimin1|349505|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=726bp|location=Sequence derived from alignment at Contig_45:16718..19265+ (Tribonema minus UTEX_B_3156 )back to top |