Trimin1|349505|estExt_Genemark1.C_Ctg_450003 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|349505
Unique NameTrimin1|349505|estExt_Genemark1.C_Ctg_450003
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length242
Homology
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A835YRS2_9STRA (Anticodon-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS2_9STRA)

HSP 1 Score: 368 bits (944), Expect = 6.270e-127
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAKRDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGKRKSGHRKG 241
            MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAKRDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGKRKSGHRKG
Sbjct:    1 MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAKRDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEGKRKSGHRKG 241          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A835ZQ15_9STRA (Anticodon-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ15_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.120e-41
Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGN----CSMRMVNAGHLTATEVLEAPA-----DGGALGPHGRISSA--KELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQ 174
            VG RV+V     E +EG VYT D  T MLVLQC+     G      CSMRM++  H+ A  V++A A     D  A     ++ +   KEL +KE KA+R+AERA++Q+N  A+ E QA+  AL++TMDCEW  +S++++DQV++DPPY    C  L GCP  ALER+QKVLEGERRK+ Q
Sbjct:    9 VGDRVKVTLSSGEIIEGLVYTEDRMTNMLVLQCSGAAASGAGAAATCSMRMLSREHIIALLVVQAQAWDWTGDDAATFSVAKLPTVTPKELHKKEEKALREAERAMAQLNARATLEGQALCFALSKTMDCEWDNVSLIVFDQVRVDPPYTANDCKMLPGCPPAALERIQKVLEGERRKMHQ 189          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A2D4BK89_PYTIN (AD domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK89_PYTIN)

HSP 1 Score: 106 bits (264), Expect = 8.550e-25
Identity = 74/169 (43.79%), Postives = 92/169 (54.44%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 172
            VGA+VRV TC +ET EG ++T+D     L+L+  PV         R+     L   EV+E AP+D     P     S  +L R E K    AERAL+ I    S EAQAIFDAL +TM C W G SI + + V I PPY P  CV  +      L RV++VLEGER KL
Sbjct:   19 VGAKVRVTTCHDETFEGVIFTLDAVANFLILEERPVD-APAKSKTRIFQMEALKKIEVVEKAPSDANLALPS---VSEDDLLRLEQKNKGIAERALASIGKGVSAEAQAIFDALNKTMPCAWEGQSIRVMEDVLIQPPYEPQNCVSAN---TQVLARVKRVLEGERNKL 180          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: H3H3B6_PHYRM (AD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3B6_PHYRM)

HSP 1 Score: 105 bits (261), Expect = 2.260e-24
Identity = 75/174 (43.10%), Postives = 95/174 (54.60%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 177
            VGA+VRV T   ET EG ++TVD     LVL+       G     R+     L   EVLE APA      P   + S +EL+R E +    AERAL+ I    +GEAQ IFDAL +TM CEW G +I +  +V I PPY P  CV  +      L RV+KVLEGE+ KL ++ K
Sbjct:   24 VGAKVRVITSGQETFEGEIFTVDTVANFLVLE----EQDGAKSKTRIFQLEALQKVEVLEPAPAGLQLTLP---VISDEELQRMEQRNKGVAERALASIGQGVTGEAQTIFDALNKTMPCEWEGANIRVMGEVVIKPPYHPQNCVSTN---TQVLSRVKKVLEGEKSKLKKITK 187          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: D0NJK2_PHYIT (AD domain-containing protein n=18 Tax=Phytophthora TaxID=4783 RepID=D0NJK2_PHYIT)

HSP 1 Score: 103 bits (258), Expect = 6.100e-24
Identity = 77/174 (44.25%), Postives = 94/174 (54.02%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 177
            VGA+VRV T   ET EG ++T+D     LVL+       G  C  R+     L   EVLE APA  G +     ISS  EL R E +    AERAL+ I    S EAQ IFDAL +TM CEW G +I +  +V I PPY P  CV  +      L RV+KVLEGE+ KL +  K
Sbjct:   23 VGAKVRVVTAAKETFEGVIFTLDPVANFLVLE----EQDGAKCKTRIFQLKALQKVEVLEHAPA--GLMLTLPAISS-DELLRMEQRNKVLAERALASIGQGVSSEAQVIFDALNKTMPCEWEGANIRVMGEVVIKPPYHPQNCVSAN---TQVLSRVKKVLEGEKSKLKKAKK 186          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A8K1CPS1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPS1_PYTOL)

HSP 1 Score: 102 bits (254), Expect = 2.260e-23
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQ-CTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALG-PHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 177
            VGA+VRV T L  TVEG ++T+D     L+L+  +   P      +  ++A  L + EV+E  A    L  PH    S  +L R E K    AERAL+ I  N S EAQAIFDAL +TM C W G +I + ++V I PPY P  CV  +      L R++KVLEGE+ KL + +K
Sbjct:   15 VGAKVRVVTSLEVTVEGVIFTLDPIANFLILEESSSETPAKSKTHIFQMDA--LKSIEVIEKAAGDANLNLPH---ISEDDLLRLEQKNKGIAERALASIGENVSAEAQAIFDALNKTMPCHWEGQNIRVMEEVLIKPPYQPQNCVSSN---TQVLSRIKKVLEGEKNKLRKASK 181          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A0P1A745_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A745_PLAHL)

HSP 1 Score: 101 bits (252), Expect = 4.460e-23
Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 172
            VGA++RV T  +ET EGTV+T+D     LVL+       G      + +   L   EVLE    G  L     + SA EL+R E +    AE+AL+ I    +GEAQAIFDAL +TM C+W G +I +   V I PPY P  C+  +      L RV+KVLEGE+ KL
Sbjct:   21 VGAKIRVETNKHETFEGTVFTLDPVANFLVLE----ERDGAKLRTLIFHCNALQKVEVLEEAPSGLMLKLP--VISADELQRLEQQNKEKAEKALASIGQGVTGEAQAIFDALNKTMPCKWEGNAIRVMGDVTIKPPYHPQNCMSTNNL---VLSRVKKVLEGEKSKL 179          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A5D6Y5E4_9STRA (AD domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5E4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.450e-23
Identity = 76/174 (43.68%), Postives = 94/174 (54.02%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVL-EAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 177
            VGARVRV T  +ET EG ++TVD     L L+      VG     R+     L   EVL +APAD     P+    +  +L R E +    AERAL+ I    S EAQ IFDAL +TM CEW G +I +   V I PPY P  CV  +   A AL RV+KVLEGE+ KL +  K
Sbjct:   25 VGARVRVLTQADETFEGAIFTVDPVASFLFLEEYAADSVGKG-KTRIFQLEALKKIEVLAKAPADANVGLPN---ITEDDLLRLEQRNKSVAERALASIGKGVSTEAQTIFDALNKTMPCEWEGQTIRVMTDVVIKPPYQPQNCVSEN---AQALSRVKKVLEGEKNKLKKAKK 191          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: K3WYV9_GLOUD (AD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYV9_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 3.160e-21
Identity = 72/174 (41.38%), Postives = 92/174 (52.87%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMRMVNAGHLTATEVLE-APADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKLVQLAK 177
            +GA+VRV T   E  EG ++T+D     L+L+         N   RM     L   E+LE APAD  A  P     +  +L R E +    AERAL+ I  + S EAQAIFDAL +TM CEW G +I +   V I PPY P  CV         L+RV+KVLEGE+ KL +  K
Sbjct:   26 IGAKVRVLTQAAEAFEGVIFTIDPIASFLILEERFADAPAKN-KTRMFQIDALKKIELLEKAPADVNANLPS---INEDDLLRLEQRNKDIAERALASIGKDVSSEAQAIFDALNKTMPCEWEGTNIRVMGDVLIKPPYQPQNCV---STKPQVLDRVKKVLEGEKNKLKRAKK 192          
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Match: A0A3M6VNF5_9STRA (AD domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VNF5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.540e-21
Identity = 74/171 (43.27%), Postives = 93/171 (54.39%), Query Frame = 0
Query:    5 VGARVRVWTCLNETVEGTVYTVDHTTGMLVL--QCTPVPPVGG-NCSMRMVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALSQINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRLHGCPAGALERVQKVLEGERRKL 172
            VGA+V V T   ET EG ++TVD     LVL  Q   +    G     R+     L   EVL+ PA  G       IS  ++L R E +    AERAL+ I    SGEAQAIFDAL +TM CEW G++I +  +V I PPY P +CV  +      L RV+KVLEGE+ KL
Sbjct:   23 VGAKVSVLTNSQETFEGVIFTVDPVANFLVLVDQMLTIEEQNGIKSKTRIFQLEALQKIEVLD-PAPVGLQLTLPAISE-EDLMRAEQRNKGLAERALASIGQGVSGEAQAIFDALNKTMPCEWEGVNIRVMGEVVIKPPYQPQKCVSAN---TQVLSRVKKVLEGEKIKL 188          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349505 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRS2_9STRA6.270e-127100.00Anticodon-binding domain-containing protein n=1 Ta... [more]
A0A835ZQ15_9STRA1.120e-4147.51Anticodon-binding domain-containing protein n=1 Ta... [more]
A0A2D4BK89_PYTIN8.550e-2543.79AD domain-containing protein n=1 Tax=Pythium insid... [more]
H3H3B6_PHYRM2.260e-2443.10AD domain-containing protein n=1 Tax=Phytophthora ... [more]
D0NJK2_PHYIT6.100e-2444.25AD domain-containing protein n=18 Tax=Phytophthora... [more]
A0A8K1CPS1_PYTOL2.260e-2341.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1A745_PLAHL4.460e-2341.67Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A5D6Y5E4_9STRA7.450e-2343.68AD domain-containing protein n=1 Tax=Pythium brass... [more]
K3WYV9_GLOUD3.160e-2141.38AD domain-containing protein n=1 Tax=Globisporangi... [more]
A0A3M6VNF5_9STRA4.540e-2143.27AD domain-containing protein n=1 Tax=Peronospora e... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 158..178
NoneNo IPR availableCOILSCoilCoilcoord: 81..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..241
NoneNo IPR availablePANTHERPTHR13542:SF0PROTEIN LSM12 HOMOLOGcoord: 4..175
IPR019181Anticodon-binding domainSMARTSM00995AD_2coord: 74..164
e-value: 1.8E-18
score: 77.3
IPR019181Anticodon-binding domainPFAMPF09793ADcoord: 81..164
e-value: 1.0E-19
score: 70.4
IPR039683Protein Lsm12-likePANTHERPTHR13542LSM12 HOMOLOGcoord: 4..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_45contigContig_45:16760..19224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349505mRNA_6030Tribonema minus UTEX_B_3156 mRNAContig_45 16718..19265 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|349505|estExt_Genemark1.C_Ctg_450003 ID=Trimin1|349505|estExt_Genemark1.C_Ctg_450003|Name=jgi.p|Trimin1|349505|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=242bp
MDLPVGARVRVWTCLNETVEGTVYTVDHTTGMLVLQCTPVPPVGGNCSMR
MVNAGHLTATEVLEAPADGGALGPHGRISSAKELERKEAKAMRDAERALS
QINFNASGEAQAIFDALARTMDCEWLGLSIVIYDQVQIDPPYAPAQCVRL
HGCPAGALERVQKVLEGERRKLVQLAKRDSASSAAAAGEAAREHRSSSSS
SSAPVAAVKQPLEQPQSLPPPQQQQQQRAAEGKRKSGHRKG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
IPR039683Lsm12-like