mRNA_5851 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347588
Unique NamemRNA_5851
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A835ZB66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB66_9STRA)

HSP 1 Score: 630 bits (1626), Expect = 1.310e-227
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
Query:    1 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 999
            MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD
Sbjct:    1 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 333          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 1.900e-79
Identity = 173/335 (51.64%), Postives = 212/335 (63.28%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEG-APKSKQA-LPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTAN---TVYVKNLAWATTEDGLRRCFEAIGA-IRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGK-----KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 999
            SK+VALVEF  A DA++AFKRLA  R+QHV LYLEWAPL  FK+   P SK A LP  E A             A  + A  DED+ A    +    T++VKNL+++TTE GLR CFE  G  +R+V+IPRKK P  S A        LSMGFGFVE A A+    ++ TLQGT+LDGHALELK STKRL P  K              KR+K+I RN+ FQATA+E+REL  ++GQL+RVR+PKKFDG HRGFAF+DF TAQEA  A ++L STH YGRHLV EWAE+   G D+  LR KAA+D+RG   +  G+  K  +    GD   D D
Sbjct:  565 SKTVALVEFLAASDAKKAFKRLACARFQHVLLYLEWAPLKAFKDTFEPSSKPASLPASEKA-------------ATGEEAKVDEDEVAAGRASKEPLTMFVKNLSFSTTEAGLRTCFEKAGLQVRSVSIPRKKGPGASEAT-------LSMGFGFVECADASLVDKSLKTLQGTVLDGHALELKRSTKRLTPATKASSXXXXXSQGDSLKRTKIIIRNIPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQEAMGAKKSLESTHFYGRHLVGEWAED---GEDMDTLRAKAARDLRGP--SNGGRPAKRQKAASSGDDFADMD 874          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A5D6YES3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YES3_9STRA)

HSP 1 Score: 272 bits (695), Expect = 2.300e-79
Identity = 160/300 (53.33%), Postives = 201/300 (67.00%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI----GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915
            SK++ALVEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F + AP+  QA   G  A  A  GV             AD+D++A A   NT+ VKNL++AT E  L + F  +G +R V I R+K P           G LSMGFGFVEF     A  A+A LQ T+LDGHAL LK S K+LAP  K+     G GVG  ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA +AF ALAS+HLYGRHLVLEWAE+     D+  LR KA++D+
Sbjct:  809 SKTLALVEFFEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFNKHAPRPSQADTKGVKAA-AAPGVPD----------VADDDENA-ADARNTICVKNLSFATKEPTLEKLFRQVGGVRKVTIARRKDPKR---------GLLSMGFGFVEFDDTKHADAAIAALQATVLDGHALNLKTSQKKLAPAAKRKADSDGAGVGAGRQSKIIVRNVAFEATSHEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEAQSAFAALASSHLYGRHLVLEWAED---ADDIDTLRAKASRDL 1084          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A662XGG3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGG3_9STRA)

HSP 1 Score: 263 bits (671), Expect = 2.120e-77
Identity = 156/320 (48.75%), Postives = 202/320 (63.12%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEH----AVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI---GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDED 966
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F   A  +  A  +G+     A   + GV  DG AA  DA+             +T+ VKNL +AT E  L + FE  G +R V + R+K P           G LSMGFGFVEF AA   + A+ TLQ T++DGHAL+L  S K+L   PK+    G      ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +D+     +   KR KL ++
Sbjct:  534 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRAATATSTAGASGQKGIKTAAAVVPGVEDDGDAAVGDAS-------------HTLCVKNLNFATKEPALEKLFERCGRLRKVTVARRKDPKR---------GMLSMGFGFVEFVAAKDTERALQTLQSTVVDGHALKLILSQKKLTEAPKRKAGDGNAEASGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIETLRAKATRDLSAIQESDRRKRMKLQKE 828          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: K3WZ46_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ46_GLOUD)

HSP 1 Score: 256 bits (655), Expect = 4.280e-75
Identity = 153/315 (48.57%), Postives = 203/315 (64.44%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIG-----VGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKL 957
            SK++ALVEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F + A KS +    G  +   +  V+ D +AA           DAN    NT+ VKNL++AT E GL + F+  G +R V I R+K P           G LSMGFGFVEF      + A+ +LQ T+LDGHAL LK S K++   PK+         + G+K SK+I RNVAF+AT+ E+RELF A+GQL+RVRMPKKFDG HRGFAF++F T QEA  AF AL+S+HLYGRHLVLEWAE+     D+  LR KA+KD+  +    +G+R+++
Sbjct:  535 SKTLALVEFFEPTEARKAFRSLAYKKYQHVPLYLEWAPVKVFNKDAIKSTKIDAKGIKSTAIVPDVNDDENAA-----------DAN----NTICVKNLSFATKEQGLEKLFKQCGKLRKVTIARRKDPKR---------GMLSMGFGFVEFVDPKHVEAAIKSLQSTVLDGHALNLKISQKKMTQAPKRKAGDDDDAKMSGRK-SKIIVRNVAFEATSNEIRELFAAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEAQTAFSALSSSHLYGRHLVLEWAED---ADDIDTLRAKASKDL--SAINDSGRRKRM 819          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A1V9YGD5_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD5_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.450e-73
Identity = 160/321 (49.84%), Postives = 207/321 (64.49%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKS-KQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVR----GALAAKAGKRRKLDEDGGF 975
            SK++AL+EF  A +AR+AF+ LAY ++Q++PLYLEWAP+ +FK  A  S  + L     A  A   V AD          A+ D        NT+ VKNL +ATTE  L+  FE +G +R   I RKK P      K   P  LSMGFGFVEF  AA+AK A+A L GT+LDGHA+++K S K+LAPV K        K  +K+I RN+AF+AT +++RELFGA+GQL+ VRMPKKFDG HRGFAFI+F T  EA +AF +LAS+HLYGRHLVLEWA ED+E  D+  LR KA +D+     G  AAK  K + +++D  F
Sbjct:  512 SKTMALIEFVEASEARKAFRSLAYKKFQNMPLYLEWAPVKVFKGPATMSYTEKLKAQAAAAPARPEVEADN--------VAELD--------NTLCVKNLNFATTEKSLQALFEKVGHVRKATIARKKDP------KTQKPT-LSMGFGFVEFGTAAAAKKAMAQLHGTLLDGHAIDIKLSKKQLAPVKKSAAAS-SAKPSTKVICRNIAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWA-EDAE--DLDTLRAKAGRDLASIEDGHRAAKKLKSKDVEDDMDF 805          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: G4Z1M6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1M6_PHYSP)

HSP 1 Score: 251 bits (640), Expect = 2.170e-73
Identity = 149/299 (49.83%), Postives = 193/299 (64.55%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQA-LPTGEH-AVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQ-IGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F   A  S  A  PT E   + + + V  D           DE   A    ++T+ VKNL + T E  L + FE  G +R V + R+K P           G LSMGFGFVE+  A   + A+ TLQ T++DGHAL LK S K+ +  PK+ +G   G  ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +D+
Sbjct:  466 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRPATASSSAKAPTSEQKGIKSTSAVVPD---------VDDEGDTAVGDASHTICVKNLNFTTKEAALEKIFERCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDAKHTERALQTLQNTVVDGHALNLKLSQKKASAAPKRAVGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDL 743          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: H3GG11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG11_PHYRM)

HSP 1 Score: 255 bits (652), Expect = 3.090e-73
Identity = 151/303 (49.83%), Postives = 195/303 (64.36%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVG------AIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI-GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F   A  S  A  +     G       + GV  DG AA  DA+             +T+ VKNL ++T E  L + FE  G +R V + R+K P           G LSMGFGFVE+  +   ++A+ TLQ TI+DGHAL LK S K+ +  PK+  G G G  ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +D+
Sbjct:  858 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRPASASWSAKTSASEQKGIKTTSTVVPGVDDDGDAAVGDAS-------------HTICVKNLNFSTKEPTLEKIFERCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDSKHTESALQTLQSTIVDGHALNLKLSQKKASAAPKRAAGDGEGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDL 1135          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: D0NJ71_PHYIT (RNA-binding protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NJ71_PHYIT)

HSP 1 Score: 249 bits (637), Expect = 5.000e-73
Identity = 153/313 (48.88%), Postives = 198/313 (63.26%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTAN---TVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGK-KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRK 954
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F    P S     + E       G+        T A   D D DA+A+  +   T+ VKNL ++T E  L + F   G +R V + R+K P           G LSMGFGFVE+  A   + A+ TLQ T++DGHAL LK S K+ +  PK+    V G+ ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +DV    A    +RRK
Sbjct:  459 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDR--PASSTNTSSSEQK-----GIKT------TSAVVPDVDDDADAAVGDACHTICVKNLNFSTKEPALEKIFARCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDAKDTERALQTLQNTVVDGHALNLKLSQKKASTAPKRAAGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDV---TAINDSERRK 743          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A3L6UUB8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UUB8_9STRA)

HSP 1 Score: 238 bits (607), Expect = 5.760e-73
Identity = 143/296 (48.31%), Postives = 192/296 (64.86%), Query Frame = 1
Query:   28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915
            SK++ALVEF  A +AR+AF+ LAY ++QHVPLYLEWAP+ +FK  AP +   +   +    A +G +A        A   D + D  A   NT+ VKNL + TTE  L+  FE +G +    I RKK  +G           LSMGFGFVEF  AA+AK A+ +LQG +L+GHA+++K S K+L P   Q         ++K+I RN+AF+AT +++RELF A+GQL+ VRMPKKFDG HRGFAFI+F T  EA +AF AL+S+HLYGRHLVLEWAE+     D+  LR KA++D+
Sbjct:   50 SKTMALVEFMEASEARKAFRMLAYKKFQHVPLYLEWAPVKVFK--APAT---MTYSDKLKAASSGPAA--------ATRPDVEADNVAELDNTLCVKNLNFTTTEAVLKAAFEKVGYLT---IARKKDRSGKLT--------LSMGFGFVEFGTAAAAKKAMQSLQGNLLEGHAMDIKVSRKQLQPAKAQAAKSAANVPKTKVICRNIAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAED---ADDLDTLRAKASRDL 318          
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A836C7B4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7B4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.730e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 3
Query:   96 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG 401
            MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG
Sbjct:    1 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG 102          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZB66_9STRA1.310e-227100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LH81_ECTSI1.900e-7951.64RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A5D6YES3_9STRA2.300e-7953.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662XGG3_9STRA2.120e-7748.75Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WZ46_GLOUD4.280e-7548.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9YGD5_9STRA1.450e-7349.84RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=... [more]
G4Z1M6_PHYSP2.170e-7349.83Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
H3GG11_PHYRM3.090e-7349.83Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0NJ71_PHYIT5.000e-7348.88RNA-binding protein, putative n=11 Tax=Phytophthor... [more]
A0A3L6UUB8_9STRA5.760e-7348.31Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7B4_9STRA5.730e-57100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_13contigContig_13:1244094..1246741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347588|estExt_Genemark1.C_Ctg_130116
BRITEko00000,ko03009
KEGG koko:K14787
GOsGO:0000003,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009791,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018996,GO:0019843,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034462,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0040002,GO:0040008,GO:0040009,GO:0040010,GO:0040019,GO:0040025,GO:0042134,GO:0042254,GO:0042255,GO:0042274,GO:0042303,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045137,GO:0045927,GO:0045995,GO:0046483,GO:0048513,GO:0048518,GO:0048569,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904,GO:2000026
Preferred nameRBM19
Descriptionsmall-subunit processome assembly
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0110@1|root,KOG0110@2759|Eukaryota
Evalue8.34e-80
Seed ortholog2880.D8LH81
Hectar predicted targeting categoryother localisation
TranscriptId347910
TrackFilteredModels1
ProteinId347588
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347588gene_5851Tribonema minus UTEX_B_3156 geneContig_13 1244094..1246741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347588Trimin1|347588|estExt_Genemark1.C_Ctg_130116Tribonema minus UTEX_B_3156 polypeptideContig_13 1244094..1246710 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5851_1exon_5851_1Tribonema minus UTEX_B_3156 exonContig_13 1244094..1244125 +
exon_5851_2exon_5851_2Tribonema minus UTEX_B_3156 exonContig_13 1244506..1244653 +
exon_5851_3exon_5851_3Tribonema minus UTEX_B_3156 exonContig_13 1244953..1245180 +
exon_5851_4exon_5851_4Tribonema minus UTEX_B_3156 exonContig_13 1245684..1245935 +
exon_5851_5exon_5851_5Tribonema minus UTEX_B_3156 exonContig_13 1246369..1246741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5851CDS_5851Tribonema minus UTEX_B_3156 CDSContig_13 1244094..1244125 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5851UTR3_5851Tribonema minus UTEX_B_3156 three_prime_UTRContig_13 1246711..1246741 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5851 ID=mRNA_5851|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1033bp|location=Sequence derived from alignment at Contig_13:1244094..1246741+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGGTGCTGGCTTTGCACGGCTCCAAATCCGTCGCGCTGGTGGA
GTTTGGCACCGCTGTGGATGCGAGACGCGCCTTCAAGCGCCTGGCCTACA
CGCGCTACCAGCACGTCCCCCTGTACCTGGAGTGGGCACCGCTGGGCATA
TTTAAGGAGGGGGCGCCCAAGTCCAAGCAGGCGCTTCCAACTGGCGAACA
CGCTGTCGGCGCCATTGCCGGCGTCTCGGCTGATGGCTCCGCGGCAGCAA
CAGATGCGGCAGCTGCAGACGAGGACCAAGACGCCAATGCCAGCACGGCG
AATACTGTATACGTCAAGAATCTGGCGTGGGCAACCACAGAAGATGGGCT
GAGGAGGTGCTTTGAGGCCATTGGCGCGATTCGGGCCGTTGCGATACCCA
GGAAAAAGCCCCCTGCGGGATCAGCAGCAGCTAAGGACGCGCCCCCCGGT
GGCCTCAGCATGGGCTTCGGCTTCGTCGAGTTTGCTGCGGCTGCCAGTGC
CAAAACCGCCGTTGCCACGCTTCAGGGCACCATTCTGGATGGGCACGCCC
TGGAGCTCAAGCACTCGACCAAGCGCCTCGCGCCTGTGCCCAAGCAAATT
GGAGTGGGAGTGGGCGGCAAGAAGCGGTCCAAGCTCATCGCACGCAACGT
CGCTTTTCAGGCAACCGCTCGAGAGCTGCGAGAGCTATTCGGCGCGTACG
GCCAGCTCCAGCGCGTGCGCATGCCCAAGAAGTTTGACGGCTCGCACCGC
GGCTTCGCTTTCATAGACTTCGCCACGGCGCAGGAGGCCTCCAACGCCTT
CCAGGCGCTCGCCAGCACGCACCTGTACGGGCGGCACTTGGTGCTGGAAT
GGGCGGAGGAAGACAGCGAAGGTGGCGATGTGTCAGCGCTCCGAGAGAAG
GCCGCAAAAGACGTGCGCGGCGCGCTGGCGGCAAAAGCCGGCAAGCGGCG
CAAGTTGGACGAGGATGGGGGGTTCGGGGACGGCGGCGGCGACTTTGACT
GACTGTCTGCTGCAATACACGTCTGTGTGTCCG
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protein sequence of jgi.p|Trimin1|347588

>Trimin1|347588|estExt_Genemark1.C_Ctg_130116 ID=Trimin1|347588|estExt_Genemark1.C_Ctg_130116|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp
MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGI
FKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTA
NTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPG
GLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI
GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHR
GFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREK
AAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD*
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mRNA from alignment at Contig_13:1244094..1246741+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5851 ID=mRNA_5851|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2648bp|location=Sequence derived from alignment at Contig_13:1244094..1246741+ (Tribonema minus UTEX_B_3156 )
ATGCACGTGGTGCTGGCTTTGCACGGCTCCAAGTAGATCGCAGACAACGA ATTTGTGTGTTTACAATCATGCTGCAGTGTTGATATCCAAATCGACTGGT TTGATGGCTCGTGCGTTATTGGCAAGGCTGGGGCAACCCAGCCTGTACGA GTTGCCCCAGCTGGACGAGAGCAGCTTCATGCCGCTGGCGCAGTTTGGTT CATGTTTGGATCTGTCATACTTCCGTGATGCGTCTGGCGCGCCCATAGGA AGTCAGCCTACACGCTCAATGTTTCGGCGGACTTCCAACGCAGGAGTGCA CAATAGCACACCTGGTGAAGCATATTTCACCATACAATGCGCACACTATC TCATGGCTGGCGCCGTCACTTACAAATCCCAAATTGACATTTGCTTCTGT CGTTGACTGCAGATCCGTCGCGCTGGTGGAGTTTGGCACCGCTGTGGATG CGAGACGCGCCTTCAAGCGCCTGGCCTACACGCGCTACCAGCACGTCCCC CTGTACCTGGAGTGGGCACCGCTGGGCATATTTAAGGAGGGGGCGCCCAA GTCCAAGCAGGTGAGGGGGTGCCTGCGTGTGTGGTGATGCGTTGTTTACA TGTTACAGTCATGCCTGACCCAAAACATCTGAGTGTATGCACCGCTGATG AATCGAGTTGCCGGTCCAAGTCACCAAAGGTTGCCATAGCCCAACACCTG TGATGAATCATACACCGCCAGCTATGCTACGCACGCTTGGGGGAGCATGC TGCCCCTGTCATGTTTGGTCTGCACATTCTTGCACCAGCAACATGCTCAC AACAGCGAGACAGTACTTCCAGCATTGAAGCATGGCCGCACATGCTCCGC TCTACGCAGGCGCTTCCAACTGGCGAACACGCTGTCGGCGCCATTGCCGG CGTCTCGGCTGATGGCTCCGCGGCAGCAACAGATGCGGCAGCTGCAGACG AGGACCAAGACGCCAATGCCAGCACGGCGAATACTGTATACGTCAAGAAT CTGGCGTGGGCAACCACAGAAGATGGGCTGAGGAGGTGCTTTGAGGCCAT TGGCGCGATTCGGGCCGTTGCGATACCCAGGAAAAAGGTAAGCATCTGCT GCTCTCAGAGCCGCCATCATTTGCAATATTGTGAGCTGCGGTTGTGAGCA GATAAGATACATCATTGTCATTGCTGAATAAAGCAGTGTTCATCAAGGGG TGGTGGTTGTGCTGGAGTGTGCTCAGGGTGTTTTGACTATGCTGGCGCAA TTCAGTACGTACACACTGTTATTAATGCTCTGTGTGATGACGCGCTGATA GCATCGCCACCGCCTGTGTTGTGTGATGGCTGACTAGGTATGTACGTCAT TGATTTCACATGGCAGTGCTCAGCTGGGGCGGTGCAGTCACCATGACGTT GTTGCTGTTGCTCTTTGCTCGTGTTGATCGACTGCAGTGTCTGCTGCTGC AGCACAGGCACTGCTTGGTCGGCTGTCTACTTCTCCATTTCGAGCAGCTC CATAAAGAGTACAAGCACATGTGTTTTCATCGGCTCTACCAAACACTTGA AACGCAGATTTCAATTTGCAATTCGCTTCCCACACTGCAGCCCCCTGCGG GATCAGCAGCAGCTAAGGACGCGCCCCCCGGTGGCCTCAGCATGGGCTTC GGCTTCGTCGAGTTTGCTGCGGCTGCCAGTGCCAAAACCGCCGTTGCCAC GCTTCAGGGCACCATTCTGGATGGGCACGCCCTGGAGCTCAAGCACTCGA CCAAGCGCCTCGCGCCTGTGCCCAAGCAAATTGGAGTGGGAGTGGGCGGC AAGAAGCGGTCCAAGCTCATCGCACGCAACGTCGCTTTTCAGGTAACCGC CGTTGGCAACACTCGCGCCATCAACTCCAGTGACAGCTCACTCTTTGAAG CATGACTTTTTTGTTTGTTTTGAACCAAGTCATGATGTCTTTCCTGCATC ATGTACCGCTTGCTTTCCAGAAGTGTGATGGCAATCTGAGTTTTGCGTCA CATGTTTGCGCTGCGCACCAGCAATCAAACATTTTGTATCCACCAATGTT GGTTCAGGTTCGTTGCATGCCATTGTTTGCACATCAAGAACTGGCCTGCG GCCTTGAAACGCTGTGTGGCGCACACTGCAGCTCGTTTGCATACTCAACG CATCTCACTTTGGCCTTCACTTGCTCACAATCAGCGGTCGCACAACAAGC CCTCGAGCTACATGAACTACAGCACCAGATCTCTGACCCGTCAATCGACA CTCATTCTTCCACTGCTTTCGACAGGCAACCGCTCGAGAGCTGCGAGAGC TATTCGGCGCGTACGGCCAGCTCCAGCGCGTGCGCATGCCCAAGAAGTTT GACGGCTCGCACCGCGGCTTCGCTTTCATAGACTTCGCCACGGCGCAGGA GGCCTCCAACGCCTTCCAGGCGCTCGCCAGCACGCACCTGTACGGGCGGC ACTTGGTGCTGGAATGGGCGGAGGAAGACAGCGAAGGTGGCGATGTGTCA GCGCTCCGAGAGAAGGCCGCAAAAGACGTGCGCGGCGCGCTGGCGGCAAA AGCCGGCAAGCGGCGCAAGTTGGACGAGGATGGGGGGTTCGGGGACGGCG GCGGCGACTTTGACTGACTGTCTGCTGCAATACACGTCTGTGTGTCCG
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Coding sequence (CDS) from alignment at Contig_13:1244094..1246741+

>mRNA_5851 ID=mRNA_5851|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1002bp|location=Sequence derived from alignment at Contig_13:1244094..1246741+ (Tribonema minus UTEX_B_3156 )
ATGCACGTGGTGCTGGCTTTGCACGGCTCCAAATCCGTCGCGCTGGTGGA
GTTTGGCACCGCTGTGGATGCGAGACGCGCCTTCAAGCGCCTGGCCTACA
CGCGCTACCAGCACGTCCCCCTGTACCTGGAGTGGGCACCGCTGGGCATA
TTTAAGGAGGGGGCGCCCAAGTCCAAGCAGGCGCTTCCAACTGGCGAACA
CGCTGTCGGCGCCATTGCCGGCGTCTCGGCTGATGGCTCCGCGGCAGCAA
CAGATGCGGCAGCTGCAGACGAGGACCAAGACGCCAATGCCAGCACGGCG
AATACTGTATACGTCAAGAATCTGGCGTGGGCAACCACAGAAGATGGGCT
GAGGAGGTGCTTTGAGGCCATTGGCGCGATTCGGGCCGTTGCGATACCCA
GGAAAAAGCCCCCTGCGGGATCAGCAGCAGCTAAGGACGCGCCCCCCGGT
GGCCTCAGCATGGGCTTCGGCTTCGTCGAGTTTGCTGCGGCTGCCAGTGC
CAAAACCGCCGTTGCCACGCTTCAGGGCACCATTCTGGATGGGCACGCCC
TGGAGCTCAAGCACTCGACCAAGCGCCTCGCGCCTGTGCCCAAGCAAATT
GGAGTGGGAGTGGGCGGCAAGAAGCGGTCCAAGCTCATCGCACGCAACGT
CGCTTTTCAGGCAACCGCTCGAGAGCTGCGAGAGCTATTCGGCGCGTACG
GCCAGCTCCAGCGCGTGCGCATGCCCAAGAAGTTTGACGGCTCGCACCGC
GGCTTCGCTTTCATAGACTTCGCCACGGCGCAGGAGGCCTCCAACGCCTT
CCAGGCGCTCGCCAGCACGCACCTGTACGGGCGGCACTTGGTGCTGGAAT
GGGCGGAGGAAGACAGCGAAGGTGGCGATGTGTCAGCGCTCCGAGAGAAG
GCCGCAAAAGACGTGCGCGGCGCGCTGGCGGCAAAAGCCGGCAAGCGGCG
CAAGTTGGACGAGGATGGGGGGTTCGGGGACGGCGGCGGCGACTTTGACT
GA
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