mRNA_5851 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A835ZB66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB66_9STRA) HSP 1 Score: 630 bits (1626), Expect = 1.310e-227 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1 Query: 1 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 999 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD Sbjct: 1 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 333
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI) HSP 1 Score: 269 bits (687), Expect = 1.900e-79 Identity = 173/335 (51.64%), Postives = 212/335 (63.28%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEG-APKSKQA-LPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTAN---TVYVKNLAWATTEDGLRRCFEAIGA-IRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGK-----KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 999 SK+VALVEF A DA++AFKRLA R+QHV LYLEWAPL FK+ P SK A LP E A A + A DED+ A + T++VKNL+++TTE GLR CFE G +R+V+IPRKK P S A LSMGFGFVE A A+ ++ TLQGT+LDGHALELK STKRL P K KR+K+I RN+ FQATA+E+REL ++GQL+RVR+PKKFDG HRGFAF+DF TAQEA A ++L STH YGRHLV EWAE+ G D+ LR KAA+D+RG + G+ K + GD D D Sbjct: 565 SKTVALVEFLAASDAKKAFKRLACARFQHVLLYLEWAPLKAFKDTFEPSSKPASLPASEKA-------------ATGEEAKVDEDEVAAGRASKEPLTMFVKNLSFSTTEAGLRTCFEKAGLQVRSVSIPRKKGPGASEAT-------LSMGFGFVECADASLVDKSLKTLQGTVLDGHALELKRSTKRLTPATKASSXXXXXSQGDSLKRTKIIIRNIPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQEAMGAKKSLESTHFYGRHLVGEWAED---GEDMDTLRAKAARDLRGP--SNGGRPAKRQKAASSGDDFADMD 874
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A5D6YES3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YES3_9STRA) HSP 1 Score: 272 bits (695), Expect = 2.300e-79 Identity = 160/300 (53.33%), Postives = 201/300 (67.00%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI----GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915 SK++ALVEF +AR+AF+ LAY +YQHVPLYLEWAP+ +F + AP+ QA G A A GV AD+D++A A NT+ VKNL++AT E L + F +G +R V I R+K P G LSMGFGFVEF A A+A LQ T+LDGHAL LK S K+LAP K+ G GVG ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA +AF ALAS+HLYGRHLVLEWAE+ D+ LR KA++D+ Sbjct: 809 SKTLALVEFFEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFNKHAPRPSQADTKGVKAA-AAPGVPD----------VADDDENA-ADARNTICVKNLSFATKEPTLEKLFRQVGGVRKVTIARRKDPKR---------GLLSMGFGFVEFDDTKHADAAIAALQATVLDGHALNLKTSQKKLAPAAKRKADSDGAGVGAGRQSKIIVRNVAFEATSHEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEAQSAFAALASSHLYGRHLVLEWAED---ADDIDTLRAKASRDL 1084
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A662XGG3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGG3_9STRA) HSP 1 Score: 263 bits (671), Expect = 2.120e-77 Identity = 156/320 (48.75%), Postives = 202/320 (63.12%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEH----AVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI---GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDED 966 SK++A+VEF +AR+AF+ LAY +YQHVPLYLEWAP+ +F A + A +G+ A + GV DG AA DA+ +T+ VKNL +AT E L + FE G +R V + R+K P G LSMGFGFVEF AA + A+ TLQ T++DGHAL+L S K+L PK+ G ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+ D+ LR KA +D+ + KR KL ++ Sbjct: 534 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRAATATSTAGASGQKGIKTAAAVVPGVEDDGDAAVGDAS-------------HTLCVKNLNFATKEPALEKLFERCGRLRKVTVARRKDPKR---------GMLSMGFGFVEFVAAKDTERALQTLQSTVVDGHALKLILSQKKLTEAPKRKAGDGNAEASGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIETLRAKATRDLSAIQESDRRKRMKLQKE 828
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: K3WZ46_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ46_GLOUD) HSP 1 Score: 256 bits (655), Expect = 4.280e-75 Identity = 153/315 (48.57%), Postives = 203/315 (64.44%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIG-----VGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKL 957 SK++ALVEF +AR+AF+ LAY +YQHVPLYLEWAP+ +F + A KS + G + + V+ D +AA DAN NT+ VKNL++AT E GL + F+ G +R V I R+K P G LSMGFGFVEF + A+ +LQ T+LDGHAL LK S K++ PK+ + G+K SK+I RNVAF+AT+ E+RELF A+GQL+RVRMPKKFDG HRGFAF++F T QEA AF AL+S+HLYGRHLVLEWAE+ D+ LR KA+KD+ + +G+R+++ Sbjct: 535 SKTLALVEFFEPTEARKAFRSLAYKKYQHVPLYLEWAPVKVFNKDAIKSTKIDAKGIKSTAIVPDVNDDENAA-----------DAN----NTICVKNLSFATKEQGLEKLFKQCGKLRKVTIARRKDPKR---------GMLSMGFGFVEFVDPKHVEAAIKSLQSTVLDGHALNLKISQKKMTQAPKRKAGDDDDAKMSGRK-SKIIVRNVAFEATSNEIRELFAAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEAQTAFSALSSSHLYGRHLVLEWAED---ADDIDTLRAKASKDL--SAINDSGRRKRM 819
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A1V9YGD5_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD5_9STRA) HSP 1 Score: 252 bits (643), Expect = 1.450e-73 Identity = 160/321 (49.84%), Postives = 207/321 (64.49%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKS-KQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVR----GALAAKAGKRRKLDEDGGF 975 SK++AL+EF A +AR+AF+ LAY ++Q++PLYLEWAP+ +FK A S + L A A V AD A+ D NT+ VKNL +ATTE L+ FE +G +R I RKK P K P LSMGFGFVEF AA+AK A+A L GT+LDGHA+++K S K+LAPV K K +K+I RN+AF+AT +++RELFGA+GQL+ VRMPKKFDG HRGFAFI+F T EA +AF +LAS+HLYGRHLVLEWA ED+E D+ LR KA +D+ G AAK K + +++D F Sbjct: 512 SKTMALIEFVEASEARKAFRSLAYKKFQNMPLYLEWAPVKVFKGPATMSYTEKLKAQAAAAPARPEVEADN--------VAELD--------NTLCVKNLNFATTEKSLQALFEKVGHVRKATIARKKDP------KTQKPT-LSMGFGFVEFGTAAAAKKAMAQLHGTLLDGHAIDIKLSKKQLAPVKKSAAAS-SAKPSTKVICRNIAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWA-EDAE--DLDTLRAKAGRDLASIEDGHRAAKKLKSKDVEDDMDF 805
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: G4Z1M6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1M6_PHYSP) HSP 1 Score: 251 bits (640), Expect = 2.170e-73 Identity = 149/299 (49.83%), Postives = 193/299 (64.55%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQA-LPTGEH-AVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQ-IGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915 SK++A+VEF +AR+AF+ LAY +YQHVPLYLEWAP+ +F A S A PT E + + + V D DE A ++T+ VKNL + T E L + FE G +R V + R+K P G LSMGFGFVE+ A + A+ TLQ T++DGHAL LK S K+ + PK+ +G G ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+ D+ LR KA +D+ Sbjct: 466 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRPATASSSAKAPTSEQKGIKSTSAVVPD---------VDDEGDTAVGDASHTICVKNLNFTTKEAALEKIFERCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDAKHTERALQTLQNTVVDGHALNLKLSQKKASAAPKRAVGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDL 743
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: H3GG11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG11_PHYRM) HSP 1 Score: 255 bits (652), Expect = 3.090e-73 Identity = 151/303 (49.83%), Postives = 195/303 (64.36%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVG------AIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI-GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915 SK++A+VEF +AR+AF+ LAY +YQHVPLYLEWAP+ +F A S A + G + GV DG AA DA+ +T+ VKNL ++T E L + FE G +R V + R+K P G LSMGFGFVE+ + ++A+ TLQ TI+DGHAL LK S K+ + PK+ G G G ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+ D+ LR KA +D+ Sbjct: 858 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRPASASWSAKTSASEQKGIKTTSTVVPGVDDDGDAAVGDAS-------------HTICVKNLNFSTKEPTLEKIFERCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDSKHTESALQTLQSTIVDGHALNLKLSQKKASAAPKRAAGDGEGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDL 1135
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: D0NJ71_PHYIT (RNA-binding protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NJ71_PHYIT) HSP 1 Score: 249 bits (637), Expect = 5.000e-73 Identity = 153/313 (48.88%), Postives = 198/313 (63.26%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTAN---TVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGK-KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRK 954 SK++A+VEF +AR+AF+ LAY +YQHVPLYLEWAP+ +F P S + E G+ T A D D DA+A+ + T+ VKNL ++T E L + F G +R V + R+K P G LSMGFGFVE+ A + A+ TLQ T++DGHAL LK S K+ + PK+ V G+ ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+ D+ LR KA +DV A +RRK Sbjct: 459 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDR--PASSTNTSSSEQK-----GIKT------TSAVVPDVDDDADAAVGDACHTICVKNLNFSTKEPALEKIFARCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDAKDTERALQTLQNTVVDGHALNLKLSQKKASTAPKRAAGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDV---TAINDSERRK 743
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A3L6UUB8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UUB8_9STRA) HSP 1 Score: 238 bits (607), Expect = 5.760e-73 Identity = 143/296 (48.31%), Postives = 192/296 (64.86%), Query Frame = 1 Query: 28 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 915 SK++ALVEF A +AR+AF+ LAY ++QHVPLYLEWAP+ +FK AP + + + A +G +A A D + D A NT+ VKNL + TTE L+ FE +G + I RKK +G LSMGFGFVEF AA+AK A+ +LQG +L+GHA+++K S K+L P Q ++K+I RN+AF+AT +++RELF A+GQL+ VRMPKKFDG HRGFAFI+F T EA +AF AL+S+HLYGRHLVLEWAE+ D+ LR KA++D+ Sbjct: 50 SKTMALVEFMEASEARKAFRMLAYKKFQHVPLYLEWAPVKVFK--APAT---MTYSDKLKAASSGPAA--------ATRPDVEADNVAELDNTLCVKNLNFTTTEAVLKAAFEKVGYLT---IARKKDRSGKLT--------LSMGFGFVEFGTAAAAKKAMQSLQGNLLEGHAMDIKVSRKQLQPAKAQAAKSAANVPKTKVICRNIAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAED---ADDLDTLRAKASRDL 318
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A836C7B4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7B4_9STRA) HSP 1 Score: 181 bits (459), Expect = 5.730e-57 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 3 Query: 96 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG 401 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG Sbjct: 1 MSCRSWRRVCSLVAWLIRAHLCGREESSGGGDTGRAALSRAACGGLNQMSSLRRGSHSCLGGSRWGCTSRRRWSSGAGGGRSXXXXXXXXXXTSQRCCSGAG 102 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5851 ID=mRNA_5851|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1033bp|location=Sequence derived from alignment at Contig_13:1244094..1246741+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCACGTGGTGCTGGCTTTGCACGGCTCCAAATCCGTCGCGCTGGTGGAback to top protein sequence of jgi.p|Trimin1|347588 >Trimin1|347588|estExt_Genemark1.C_Ctg_130116 ID=Trimin1|347588|estExt_Genemark1.C_Ctg_130116|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIback to top mRNA from alignment at Contig_13:1244094..1246741+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5851 ID=mRNA_5851|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2648bp|location=Sequence derived from alignment at Contig_13:1244094..1246741+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_13:1244094..1246741+ >mRNA_5851 ID=mRNA_5851|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1002bp|location=Sequence derived from alignment at Contig_13:1244094..1246741+ (Tribonema minus UTEX_B_3156 )back to top |