Trimin1|347588|estExt_Genemark1.C_Ctg_130116 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347588
Unique Name	Trimin1\|347588\|estExt_Genemark1.C_Ctg_130116
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	334

Homology

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A835ZB66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB66_9STRA)

HSP 1 Score: 627 bits (1616), Expect = 2.930e-226
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0

Query:    1 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 333
            MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD
Sbjct:    1 MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD 333

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A5D6YES3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YES3_9STRA)

HSP 1 Score: 272 bits (695), Expect = 1.630e-79
Identity = 160/300 (53.33%), Postives = 201/300 (67.00%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI----GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 305
            SK++ALVEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F + AP+  QA   G  A  A  GV             AD+D++A A   NT+ VKNL++AT E  L + F  +G +R V I R+K P           G LSMGFGFVEF     A  A+A LQ T+LDGHAL LK S K+LAP  K+     G GVG  ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA +AF ALAS+HLYGRHLVLEWAE+     D+  LR KA++D+
Sbjct:  809 SKTLALVEFFEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFNKHAPRPSQADTKGVKAA-AAPGVPD----------VADDDENA-ADARNTICVKNLSFATKEPTLEKLFRQVGGVRKVTIARRKDPKR---------GLLSMGFGFVEFDDTKHADAAIAALQATVLDGHALNLKTSQKKLAPAAKRKADSDGAGVGAGRQSKIIVRNVAFEATSHEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEAQSAFAALASSHLYGRHLVLEWAED---ADDIDTLRAKASRDL 1084

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 5.090e-79
Identity = 170/321 (52.96%), Postives = 209/321 (65.11%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEG-APKSKQA-LPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTAN---TVYVKNLAWATTEDGLRRCFEAIGA-IRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGK-----KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRG-ALAAKAGKRRK 318
            SK+VALVEF  A DA++AFKRLA  R+QHV LYLEWAPL  FK+   P SK A LP  E A             A  + A  DED+ A    +    T++VKNL+++TTE GLR CFE  G  +R+V+IPRKK P  S A        LSMGFGFVE A A+    ++ TLQGT+LDGHALELK STKRL P  K              KR+K+I RN+ FQATA+E+REL  ++GQL+RVR+PKKFDG HRGFAF+DF TAQEA  A ++L STH YGRHLV EWAE+   G D+  LR KAA+D+RG +   +  KR+K
Sbjct:  565 SKTVALVEFLAASDAKKAFKRLACARFQHVLLYLEWAPLKAFKDTFEPSSKPASLPASEKA-------------ATGEEAKVDEDEVAAGRASKEPLTMFVKNLSFSTTEAGLRTCFEKAGLQVRSVSIPRKKGPGASEAT-------LSMGFGFVECADASLVDKSLKTLQGTVLDGHALELKRSTKRLTPATKASSXXXXXSQGDSLKRTKIIIRNIPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQEAMGAKKSLESTHFYGRHLVGEWAED---GEDMDTLRAKAARDLRGPSNGGRPAKRQK 862

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A662XGG3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGG3_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.950e-77
Identity = 156/320 (48.75%), Postives = 202/320 (63.12%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEH----AVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI---GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKLDED 322
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F   A  +  A  +G+     A   + GV  DG AA  DA+             +T+ VKNL +AT E  L + FE  G +R V + R+K P           G LSMGFGFVEF AA   + A+ TLQ T++DGHAL+L  S K+L   PK+    G      ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +D+     +   KR KL ++
Sbjct:  534 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRAATATSTAGASGQKGIKTAAAVVPGVEDDGDAAVGDAS-------------HTLCVKNLNFATKEPALEKLFERCGRLRKVTVARRKDPKR---------GMLSMGFGFVEFVAAKDTERALQTLQSTVVDGHALKLILSQKKLTEAPKRKAGDGNAEASGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIETLRAKATRDLSAIQESDRRKRMKLQKE 828

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: K3WZ46_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ46_GLOUD)

HSP 1 Score: 256 bits (655), Expect = 3.050e-75
Identity = 153/315 (48.57%), Postives = 203/315 (64.44%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIG-----VGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRKL 319
            SK++ALVEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F + A KS +    G  +   +  V+ D +AA           DAN    NT+ VKNL++AT E GL + F+  G +R V I R+K P           G LSMGFGFVEF      + A+ +LQ T+LDGHAL LK S K++   PK+         + G+K SK+I RNVAF+AT+ E+RELF A+GQL+RVRMPKKFDG HRGFAF++F T QEA  AF AL+S+HLYGRHLVLEWAE+     D+  LR KA+KD+  +    +G+R+++
Sbjct:  535 SKTLALVEFFEPTEARKAFRSLAYKKYQHVPLYLEWAPVKVFNKDAIKSTKIDAKGIKSTAIVPDVNDDENAA-----------DAN----NTICVKNLSFATKEQGLEKLFKQCGKLRKVTIARRKDPKR---------GMLSMGFGFVEFVDPKHVEAAIKSLQSTVLDGHALNLKISQKKMTQAPKRKAGDDDDAKMSGRK-SKIIVRNVAFEATSNEIRELFAAFGQLKRVRMPKKFDGKHRGFAFVEFLTEQEAQTAFSALSSSHLYGRHLVLEWAED---ADDIDTLRAKASKDL--SAINDSGRRKRM 819

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: G4Z1M6_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1M6_PHYSP)

HSP 1 Score: 251 bits (640), Expect = 1.560e-73
Identity = 149/299 (49.83%), Postives = 193/299 (64.55%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQA-LPTGEH-AVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQ-IGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 305
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F   A  S  A  PT E   + + + V  D           DE   A    ++T+ VKNL + T E  L + FE  G +R V + R+K P           G LSMGFGFVE+  A   + A+ TLQ T++DGHAL LK S K+ +  PK+ +G   G  ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +D+
Sbjct:  466 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRPATASSSAKAPTSEQKGIKSTSAVVPD---------VDDEGDTAVGDASHTICVKNLNFTTKEAALEKIFERCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDAKHTERALQTLQNTVVDGHALNLKLSQKKASAAPKRAVGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDL 743

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: H3GG11_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GG11_PHYRM)

HSP 1 Score: 255 bits (652), Expect = 2.210e-73
Identity = 151/303 (49.83%), Postives = 195/303 (64.36%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVG------AIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI-GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 305
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F   A  S  A  +     G       + GV  DG AA  DA+             +T+ VKNL ++T E  L + FE  G +R V + R+K P           G LSMGFGFVE+  +   ++A+ TLQ TI+DGHAL LK S K+ +  PK+  G G G  ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +D+
Sbjct:  858 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDRPASASWSAKTSASEQKGIKTTSTVVPGVDDDGDAAVGDAS-------------HTICVKNLNFSTKEPTLEKIFERCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDSKHTESALQTLQSTIVDGHALNLKLSQKKASAAPKRAAGDGEGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDL 1135

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A1V9YGD5_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD5_9STRA)

HSP 1 Score: 251 bits (640), Expect = 2.820e-73
Identity = 159/318 (50.00%), Postives = 206/318 (64.78%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKS-KQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVR----GALAAKAGKRRKLDED 322
            SK++AL+EF  A +AR+AF+ LAY ++Q++PLYLEWAP+ +FK  A  S  + L     A  A   V AD          A+ D        NT+ VKNL +ATTE  L+  FE +G +R   I RKK P      K   P  LSMGFGFVEF  AA+AK A+A L GT+LDGHA+++K S K+LAPV K        K  +K+I RN+AF+AT +++RELFGA+GQL+ VRMPKKFDG HRGFAFI+F T  EA +AF +LAS+HLYGRHLVLEWA ED+E  D+  LR KA +D+     G  AAK  K + +++D
Sbjct:  512 SKTMALIEFVEASEARKAFRSLAYKKFQNMPLYLEWAPVKVFKGPATMSYTEKLKAQAAAAPARPEVEADN--------VAELD--------NTLCVKNLNFATTEKSLQALFEKVGHVRKATIARKKDP------KTQKPT-LSMGFGFVEFGTAAAAKKAMAQLHGTLLDGHAIDIKLSKKQLAPVKKSAAAS-SAKPSTKVICRNIAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWA-EDAE--DLDTLRAKAGRDLASIEDGHRAAKKLKSKDVEDD 802

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: D0NJ71_PHYIT (RNA-binding protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NJ71_PHYIT)

HSP 1 Score: 249 bits (637), Expect = 3.580e-73
Identity = 153/313 (48.88%), Postives = 198/313 (63.26%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTAN---TVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGK-KRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDVRGALAAKAGKRRK 318
            SK++A+VEF    +AR+AF+ LAY +YQHVPLYLEWAP+ +F    P S     + E       G+        T A   D D DA+A+  +   T+ VKNL ++T E  L + F   G +R V + R+K P           G LSMGFGFVE+  A   + A+ TLQ T++DGHAL LK S K+ +  PK+    V G+ ++SK+I RNVAF+AT+ E+RELFGA+GQL+RVRMPKKFDG HRGFAF++F T QEA NAF ALAS+HLYGRHLVLEWAE+     D+  LR KA +DV    A    +RRK
Sbjct:  459 SKTLAVVEFLEPSEARKAFRSLAYKKYQHVPLYLEWAPVKVFDR--PASSTNTSSSEQK-----GIKT------TSAVVPDVDDDADAAVGDACHTICVKNLNFSTKEPALEKIFARCGKLRKVTVARRKDPKR---------GMLSMGFGFVEYVDAKDTERALQTLQNTVVDGHALNLKLSQKKASTAPKRAAGEVDGEGRKSKIIVRNVAFEATSNEIRELFGAFGQLKRVRMPKKFDGRHRGFAFVEFLTEQEARNAFSALASSHLYGRHLVLEWAED---ADDIDTLRAKATRDV---TAINDSERRK 743

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BLAST of jgi.p|Trimin1|347588 vs. uniprot
Match: A0A3L6UUB8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UUB8_9STRA)

HSP 1 Score: 238 bits (607), Expect = 4.150e-73
Identity = 143/296 (48.31%), Postives = 192/296 (64.86%), Query Frame = 0

Query:   10 SKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGIFKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTANTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPGGLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQIGVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHRGFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREKAAKDV 305
            SK++ALVEF  A +AR+AF+ LAY ++QHVPLYLEWAP+ +FK  AP +   +   +    A +G +A        A   D + D  A   NT+ VKNL + TTE  L+  FE +G +    I RKK  +G           LSMGFGFVEF  AA+AK A+ +LQG +L+GHA+++K S K+L P   Q         ++K+I RN+AF+AT +++RELF A+GQL+ VRMPKKFDG HRGFAFI+F T  EA +AF AL+S+HLYGRHLVLEWAE+     D+  LR KA++D+
Sbjct:   50 SKTMALVEFMEASEARKAFRMLAYKKFQHVPLYLEWAPVKVFK--APAT---MTYSDKLKAASSGPAA--------ATRPDVEADNVAELDNTLCVKNLNFTTTEAVLKAAFEKVGYLT---IARKKDRSGKLT--------LSMGFGFVEFGTAAAAKKAMQSLQGNLLEGHAMDIKVSRKQLQPAKAQAAKSAANVPKTKVICRNIAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAED---ADDLDTLRAKASRDL 318

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347588 vs. uniprot

BLAST of jgi.p|Trimin1|347588 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZB66_9STRA	2.930e-226	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YES3_9STRA	1.630e-79	53.33	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
D8LH81_ECTSI	5.090e-79	52.96	RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 ...	[more]
A0A662XGG3_9STRA	2.950e-77	48.75	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
K3WZ46_GLOUD	3.050e-75	48.57	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
G4Z1M6_PHYSP	1.560e-73	49.83	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
H3GG11_PHYRM	2.210e-73	49.83	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A1V9YGD5_9STRA	2.820e-73	50.00	RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=...	[more]
D0NJ71_PHYIT	3.580e-73	48.88	RNA-binding protein, putative n=11 Tax=Phytophthor...	[more]
A0A3L6UUB8_9STRA	4.150e-73	48.31	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 102..187 e-value: 2.7E-15 score: 66.8 coord: 211..283 e-value: 2.5E-17 score: 73.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 215..280 e-value: 2.1E-13 score: 49.9 coord: 103..184 e-value: 3.9E-12 score: 45.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 101..191 score: 15.272143
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 210..287 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 205..308 e-value: 2.0E-24 score: 87.6 coord: 2..67 e-value: 1.9E-8 score: 36.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 74..194 e-value: 3.9E-21 score: 77.6
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 79..289
None	No IPR available	PANTHER	PTHR24012:SF719	AGAP005249-PA	coord: 79..289
None	No IPR available	CDD	cd12320	RRM6_RBM19_RRM5_MRD1	coord: 210..285 e-value: 3.27984E-44 score: 144.295
IPR034423	Probable RNA-binding protein 19, RNA recognition motif 5	CDD	cd12318	RRM5_RBM19_like	coord: 102..189 e-value: 1.02487E-27 score: 101.527
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 101..290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_13	contig	Contig_13:1244094..1246710 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347588	mRNA_5851	Tribonema minus UTEX_B_3156	mRNA	Contig_13 1244094..1246741 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347588|estExt_Genemark1.C_Ctg_130116 ID=Trimin1|347588|estExt_Genemark1.C_Ctg_130116|Name=jgi.p|Trimin1|347588|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=334bp
MHVVLALHGSKSVALVEFGTAVDARRAFKRLAYTRYQHVPLYLEWAPLGI
FKEGAPKSKQALPTGEHAVGAIAGVSADGSAAATDAAAADEDQDANASTA
NTVYVKNLAWATTEDGLRRCFEAIGAIRAVAIPRKKPPAGSAAAKDAPPG
GLSMGFGFVEFAAAASAKTAVATLQGTILDGHALELKHSTKRLAPVPKQI
GVGVGGKKRSKLIARNVAFQATARELRELFGAYGQLQRVRMPKKFDGSHR
GFAFIDFATAQEASNAFQALASTHLYGRHLVLEWAEEDSEGGDVSALREK
AAKDVRGALAAKAGKRRKLDEDGGFGDGGGDFD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034423	RBM19_RRM5
IPR035979	RBD_domain_sf