mRNA_5491 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A835Z4W5_9STRA (Putative RNA binding protein Tma22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W5_9STRA) HSP 1 Score: 377 bits (968), Expect = 4.000e-131 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
Query: 1 ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE 648
ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE
Sbjct: 1 ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE 216
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A6H5K9G4_9PHAE (SUI1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9G4_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.020e-39 Identity = 100/204 (49.02%), Postives = 123/204 (60.29%), Query Frame = 1
Query: 31 PQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIV 642
P TV+YCGVC LP EYC YG + C+AWAE NCP+ + + GL+V + EG E XXXXXXXXXXXX R A+ E V IGR+SRN+RKF+T+VGGL FP VK+KDAAK++G+QFACG SV+K SGAEE+ IQGDVL DLPGFLE+ IPA +IS++
Sbjct: 33 PLTVIYCGVCGLPPEYCEYGSTGE--ACRAWAEANCPEVL-AIEEGIAGLEVQGD-----EGGEAXXXXXXXXXXXXXXXXXGKKV-------------------RIAKPGXXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLETTLNIPAAKISVL 209
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A7S1G6N5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6N5_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.370e-23 Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 385 EPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERI 633
EP V I R RNKRK++TIV GL AFP +KLK AAK MG++F+CGCSV A+G ++I IQGDV D+P L FG+P ERI
Sbjct: 16 EPKVVISRKERNKRKYVTIVTGLDAFPSIKLKAAAKTMGKKFSCGCSVQNMATGGKQIDIQGDVQGDVPRILVEQFGVPLERI 98
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A0D6R9F6_ARACU (Translation machinery-associated protein 22 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R9F6_ARACU) HSP 1 Score: 102 bits (253), Expect = 2.920e-23 Identity = 77/220 (35.00%), Postives = 114/220 (51.82%), Query Frame = 1
Query: 22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD-------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAF-GIPAERISIVGE*RR 657
+P P VLYC VC+LP EYC +GP ++ CK W +N P + E A++LEGLK+S G + +++A T + ++ +E KR KKK PE V I +V RNKRK +TIV GL F +KL DA+K++G++FA G SV K + E+I +QGD+LY++ F+ + +P I + E R+
Sbjct: 4 KPQPVKVLYCPVCSLPAEYCEFGPDFEK--CKPWLIQNAPHLYPDLLKEAEKTAEQLEGLKIS--------GDQNDSSAP------------------------TGSASKQEEVKRLPGGKIKKKEKPE--VVIEKVVRNKRKSVTIVKGLDMFG-IKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYEIVDFITETWPSVPQNAIYFIEEGRK 186
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: N1QGE6_SPHMS (Translation machinery-associated protein 22 n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=N1QGE6_SPHMS) HSP 1 Score: 99.8 bits (247), Expect = 2.420e-22 Identity = 75/212 (35.38%), Postives = 107/212 (50.47%), Query Frame = 1
Query: 31 PQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE*RRGAA 666
P+ +LYCGVCTLP EYC +G ++ C+ W N P +Q +SAN + A+ A E AA AE E + A ++A K + I RV RNKRK++T + GL AF ++LK AK+ G++FA G SV KTASG EEIT+QGDV D+ +L +P + + IV + ++ +A
Sbjct: 13 PRNILYCGVCTLPPEYCEFGGTTKK--CEEWLSTNAPTLH---SQLYSEAALSANLSTLSVDAQKRA---------------------EKDAQKKAAKAEAAEARDAEKRATSK-------IIIKRVERNKRKYVTEIQGLEAFG-LELKKVAKEFGKKFATGSSVTKTASGGEEITVQGDVAEDVAEWLADTGKVPEDNVEIVEDKKKKSA 190
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A200QD80_9MAGN (Translation machinery-associated protein 22 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QD80_9MAGN) HSP 1 Score: 99.4 bits (246), Expect = 3.920e-22 Identity = 80/228 (35.09%), Postives = 117/228 (51.32%), Query Frame = 1
Query: 22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD------------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAF-GIPAERISIVGE*RRGAA 666
+P P VLYCGVC+LP EYC +GP ++ CK W EN PD + + +++L+ + +S+++ A+GA P + DAT+ E E KR KKK E V I +V RNKRK +TIV GL F VKL DA+K++G++FA G SV K + E+I +QGD+ YD+ F+ + +P I + + R+ AA
Sbjct: 4 KPQPVKVLYCGVCSLPAEYCEFGPDFEK--CKPWLLENAPDLYPDLLKEANGKEADKVSEQLQSVGISSSS---ADGAVPATST-----------------------DATSTSKE--EVKRLPGGKMKKKDKKE--VVIEKVVRNKRKCVTIVKGLDLFG-VKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDISYDIVEFITETWPDVPESAIYFIEDGRKVAA 198
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A9NME9_PICSI (Translation machinery-associated protein 22 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NME9_PICSI) HSP 1 Score: 98.2 bits (243), Expect = 9.370e-22 Identity = 73/223 (32.74%), Postives = 109/223 (48.88%), Query Frame = 1
Query: 22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD----------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAF-GIPAERISIVGE*RR 657
+P P VLYC VCTLP EYC +GP ++ CK W +N P + E +KL+G+++S + A+ P + + +E KR KKK PE V + +V RNKRK +TIV GL F +KL DA+K++G++FA G SV K + E+I +QGD+LYD+ F+ + +P I + + R+
Sbjct: 4 KPRPVQVLYCAVCTLPAEYCEFGPDFEK--CKPWVIQNAPHLYPDLVKADKEAEKTGEKLQGMQISGDQ---ADSTAPAGSVSKQ-----------------------------EEVKRLPGGKIKKKEKPE--VVVEKVVRNKRKCVTIVKGLDMFG-IKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYDIVEFITETWPNVPENAIYFIEDGRK 189
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A2I2G6R7_9EURO (Translation machinery-associated protein 22 (Fragment) n=2 Tax=Aspergillus TaxID=5052 RepID=A0A2I2G6R7_9EURO) HSP 1 Score: 97.4 bits (241), Expect = 1.760e-21 Identity = 76/222 (34.23%), Postives = 108/222 (48.65%), Query Frame = 1
Query: 22 RPTP-----QTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFG--IPAERISIVGE 648
+PTP + V+YCGVCTLP EYC +G A++ C+ W ++N PD E + L L VS A + A+ EA A E + A RKA K V I RV RNKRK ++++ GL + ++ K AK++G++FA G SV K+A+G EEIT+QGDV D+ +L +G IP I I+ +
Sbjct: 6 QPTPAEFQAKHVVYCGVCTLPAEYCEFGGTAKK--CEEWVKDNHPDVYQQLYSEEALSSNLSNLSVSVRERAAKDAAKKEAKAALA------------------------------EARDAERKAASK-------VHIKRVERNKRKHVSVITGLEVYG-LENKKVAKELGKKFATGSSVTKSAAGTEEITVQGDVSDDVKDWLLEVYGKEIPEANIEIIED 187
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A1B8G7S0_9PEZI (Translation machinery-associated protein 22 n=13 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A1B8G7S0_9PEZI) HSP 1 Score: 97.4 bits (241), Expect = 2.080e-21 Identity = 76/219 (34.70%), Postives = 109/219 (49.77%), Query Frame = 1
Query: 22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEG--AAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFG--IPAERISIVGE*RRGAA 666
P + ++YCGVCTLP EYC +G ++ CK W EEN PD +E +A LE + + + + A +AA A A E K A+ A + + I RV RNKRK++T V GL AF ++LK +K G++FA G SV KTASG EEI +QGDV ++ FL +G +P + I +V + ++ A
Sbjct: 10 EPQARHIVYCGVCTLPPEYCEFGGTTKK--CKEWLEENHPDMSEKIYSADALEAATSTLSIDALKRATKDSA--------------------KKAAXAAQA------EQKHASALAASR-------IIIKRVERNKRKYVTAVSGLEAFG-LELKKVSKDFGKKFATGSSVTKTASGGEEIVVQGDVSTEIEDFLLEKYGDLVPGDNIELVEDKKKKGA 192
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A0D2E023_9EURO (Translation machinery-associated protein 22 n=10 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2E023_9EURO) HSP 1 Score: 97.1 bits (240), Expect = 2.920e-21 Identity = 78/219 (35.62%), Postives = 113/219 (51.60%), Query Frame = 1
Query: 13 AGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGA-AQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFG-IPAERISIVGE*RRGA 663
A + P + V+YCGVCTLP EYC +G ++ C W E+N PD + +++ +SA + A + AE +AA A AA AE E +R A E +V I RV RNKRK++T+V GL + LK AK++G++FA G SV KTA+G EEIT+QGDV DL +L + IP + + + + ++ A
Sbjct: 15 AAAGPAARKVVYCGVCTLPPEYCEFGGTVKK--CAEWLEKNHPDMHQKLYSEEALNANLSALSVDAQKRAEKDAAKKT----------------------AKAAAAEQREAERKA----------EAIVLIKRVERNKRKYVTVVSGLEEHG-LDLKKVAKELGKKFATGSSVTKTAAGGEEITVQGDVSDDLYDWLLEKYPEIPEDNLDMKDDTKKKA 198 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5491 ID=mRNA_5491|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=700bp|location=Sequence derived from alignment at Contig_19:404557..406844+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGATGTCGATGCAGGCAGCAGGCCCACCCCTCAGACGGTGCTATACTGback to top protein sequence of jgi.p|Trimin1|35206 >Trimin1|35206|CE35205_222 ID=Trimin1|35206|CE35205_222|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTback to top mRNA from alignment at Contig_19:404557..406844+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2288bp|location=Sequence derived from alignment at Contig_19:404557..406844+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:404557..406844+ >mRNA_5491 ID=mRNA_5491|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_19:404557..406844+ (Tribonema minus UTEX_B_3156 )back to top |