mRNA_5491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|35206
Unique NamemRNA_5491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A835Z4W5_9STRA (Putative RNA binding protein Tma22 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W5_9STRA)

HSP 1 Score: 377 bits (968), Expect = 4.000e-131
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
Query:    1 ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE 648
            ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE
Sbjct:    1 ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE 216          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A6H5K9G4_9PHAE (SUI1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9G4_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.020e-39
Identity = 100/204 (49.02%), Postives = 123/204 (60.29%), Query Frame = 1
Query:   31 PQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIV 642
            P TV+YCGVC LP EYC YG   +   C+AWAE NCP+      + + GL+V  +     EG E      XXXXXXXXXXXX                       R A+         E  V IGR+SRN+RKF+T+VGGL  FP VK+KDAAK++G+QFACG SV+K  SGAEE+ IQGDVL DLPGFLE+   IPA +IS++
Sbjct:   33 PLTVIYCGVCGLPPEYCEYGSTGE--ACRAWAEANCPEVL-AIEEGIAGLEVQGD-----EGGEAXXXXXXXXXXXXXXXXXGKKV-------------------RIAKPGXXXXXXXEQRVVIGRLSRNRRKFVTVVGGLDTFPDVKIKDAAKKIGKQFACGSSVSKAPSGAEEVVIQGDVLMDLPGFLETTLNIPAAKISVL 209          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A7S1G6N5_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6N5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.370e-23
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  385 EPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERI 633
            EP V I R  RNKRK++TIV GL AFP +KLK AAK MG++F+CGCSV   A+G ++I IQGDV  D+P  L   FG+P ERI
Sbjct:   16 EPKVVISRKERNKRKYVTIVTGLDAFPSIKLKAAAKTMGKKFSCGCSVQNMATGGKQIDIQGDVQGDVPRILVEQFGVPLERI 98          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A0D6R9F6_ARACU (Translation machinery-associated protein 22 n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R9F6_ARACU)

HSP 1 Score: 102 bits (253), Expect = 2.920e-23
Identity = 77/220 (35.00%), Postives = 114/220 (51.82%), Query Frame = 1
Query:   22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD-------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAF-GIPAERISIVGE*RR 657
            +P P  VLYC VC+LP EYC +GP  ++  CK W  +N P        + E  A++LEGLK+S        G + +++A                         T + ++ +E KR      KKK  PE  V I +V RNKRK +TIV GL  F  +KL DA+K++G++FA G SV K  +  E+I +QGD+LY++  F+   +  +P   I  + E R+
Sbjct:    4 KPQPVKVLYCPVCSLPAEYCEFGPDFEK--CKPWLIQNAPHLYPDLLKEAEKTAEQLEGLKIS--------GDQNDSSAP------------------------TGSASKQEEVKRLPGGKIKKKEKPE--VVIEKVVRNKRKSVTIVKGLDMFG-IKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYEIVDFITETWPSVPQNAIYFIEEGRK 186          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: N1QGE6_SPHMS (Translation machinery-associated protein 22 n=1 Tax=Sphaerulina musiva (strain SO2202) TaxID=692275 RepID=N1QGE6_SPHMS)

HSP 1 Score: 99.8 bits (247), Expect = 2.420e-22
Identity = 75/212 (35.38%), Postives = 107/212 (50.47%), Query Frame = 1
Query:   31 PQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFGIPAERISIVGE*RRGAA 666
            P+ +LYCGVCTLP EYC +G   ++  C+ W   N P      +Q      +SAN    +  A+  A                     E      AA AE  E + A ++A  K       + I RV RNKRK++T + GL AF  ++LK  AK+ G++FA G SV KTASG EEIT+QGDV  D+  +L     +P + + IV + ++ +A
Sbjct:   13 PRNILYCGVCTLPPEYCEFGGTTKK--CEEWLSTNAPTLH---SQLYSEAALSANLSTLSVDAQKRA---------------------EKDAQKKAAKAEAAEARDAEKRATSK-------IIIKRVERNKRKYVTEIQGLEAFG-LELKKVAKEFGKKFATGSSVTKTASGGEEITVQGDVAEDVAEWLADTGKVPEDNVEIVEDKKKKSA 190          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A200QD80_9MAGN (Translation machinery-associated protein 22 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QD80_9MAGN)

HSP 1 Score: 99.4 bits (246), Expect = 3.920e-22
Identity = 80/228 (35.09%), Postives = 117/228 (51.32%), Query Frame = 1
Query:   22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD------------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAF-GIPAERISIVGE*RRGAA 666
            +P P  VLYCGVC+LP EYC +GP  ++  CK W  EN PD            + +  +++L+ + +S+++   A+GA P  +                        DAT+   E  E KR      KKK   E  V I +V RNKRK +TIV GL  F  VKL DA+K++G++FA G SV K  +  E+I +QGD+ YD+  F+   +  +P   I  + + R+ AA
Sbjct:    4 KPQPVKVLYCGVCSLPAEYCEFGPDFEK--CKPWLLENAPDLYPDLLKEANGKEADKVSEQLQSVGISSSS---ADGAVPATST-----------------------DATSTSKE--EVKRLPGGKMKKKDKKE--VVIEKVVRNKRKCVTIVKGLDLFG-VKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDISYDIVEFITETWPDVPESAIYFIEDGRKVAA 198          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A9NME9_PICSI (Translation machinery-associated protein 22 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NME9_PICSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.370e-22
Identity = 73/223 (32.74%), Postives = 109/223 (48.88%), Query Frame = 1
Query:   22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD----------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAF-GIPAERISIVGE*RR 657
            +P P  VLYC VCTLP EYC +GP  ++  CK W  +N P           + E   +KL+G+++S +    A+   P  + +                               +E KR      KKK  PE  V + +V RNKRK +TIV GL  F  +KL DA+K++G++FA G SV K  +  E+I +QGD+LYD+  F+   +  +P   I  + + R+
Sbjct:    4 KPRPVQVLYCAVCTLPAEYCEFGPDFEK--CKPWVIQNAPHLYPDLVKADKEAEKTGEKLQGMQISGDQ---ADSTAPAGSVSKQ-----------------------------EEVKRLPGGKIKKKEKPE--VVVEKVVRNKRKCVTIVKGLDMFG-IKLSDASKKLGKKFASGASVVKGPTEKEQIDVQGDILYDIVEFITETWPNVPENAIYFIEDGRK 189          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A2I2G6R7_9EURO (Translation machinery-associated protein 22 (Fragment) n=2 Tax=Aspergillus TaxID=5052 RepID=A0A2I2G6R7_9EURO)

HSP 1 Score: 97.4 bits (241), Expect = 1.760e-21
Identity = 76/222 (34.23%), Postives = 108/222 (48.65%), Query Frame = 1
Query:   22 RPTP-----QTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPD------QTEGAAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFG--IPAERISIVGE 648
            +PTP     + V+YCGVCTLP EYC +G  A++  C+ W ++N PD        E  +  L  L VS     A + A+ EA A                                 E + A RKA  K       V I RV RNKRK ++++ GL  +  ++ K  AK++G++FA G SV K+A+G EEIT+QGDV  D+  +L   +G  IP   I I+ +
Sbjct:    6 QPTPAEFQAKHVVYCGVCTLPAEYCEFGGTAKK--CEEWVKDNHPDVYQQLYSEEALSSNLSNLSVSVRERAAKDAAKKEAKAALA------------------------------EARDAERKAASK-------VHIKRVERNKRKHVSVITGLEVYG-LENKKVAKELGKKFATGSSVTKSAAGTEEITVQGDVSDDVKDWLLEVYGKEIPEANIEIIED 187          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A1B8G7S0_9PEZI (Translation machinery-associated protein 22 n=13 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A1B8G7S0_9PEZI)

HSP 1 Score: 97.4 bits (241), Expect = 2.080e-21
Identity = 76/219 (34.70%), Postives = 109/219 (49.77%), Query Frame = 1
Query:   22 RPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEG--AAQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFG--IPAERISIVGE*RRGAA 666
             P  + ++YCGVCTLP EYC +G   ++  CK W EEN PD +E   +A  LE    + + +      +  A                     +AA  A A      E K A+  A  +       + I RV RNKRK++T V GL AF  ++LK  +K  G++FA G SV KTASG EEI +QGDV  ++  FL   +G  +P + I +V + ++  A
Sbjct:   10 EPQARHIVYCGVCTLPPEYCEFGGTTKK--CKEWLEENHPDMSEKIYSADALEAATSTLSIDALKRATKDSA--------------------KKAAXAAQA------EQKHASALAASR-------IIIKRVERNKRKYVTAVSGLEAFG-LELKKVSKDFGKKFATGSSVTKTASGGEEIVVQGDVSTEIEDFLLEKYGDLVPGDNIELVEDKKKKGA 192          
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Match: A0A0D2E023_9EURO (Translation machinery-associated protein 22 n=10 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2E023_9EURO)

HSP 1 Score: 97.1 bits (240), Expect = 2.920e-21
Identity = 78/219 (35.62%), Postives = 113/219 (51.60%), Query Frame = 1
Query:   13 AGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQTEGA-AQKLEGLKVSANAEGAAEGAEPEAAATXXXXXXXXXXXXXXXXXXEAAGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGGLGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFLESAFG-IPAERISIVGE*RRGA 663
            A + P  + V+YCGVCTLP EYC +G   ++  C  W E+N PD  +   +++     +SA +  A + AE +AA                         A AA AE  E +R A          E +V I RV RNKRK++T+V GL     + LK  AK++G++FA G SV KTA+G EEIT+QGDV  DL  +L   +  IP + + +  + ++ A
Sbjct:   15 AAAGPAARKVVYCGVCTLPPEYCEFGGTVKK--CAEWLEKNHPDMHQKLYSEEALNANLSALSVDAQKRAEKDAAKKT----------------------AKAAAAEQREAERKA----------EAIVLIKRVERNKRKYVTVVSGLEEHG-LDLKKVAKELGKKFATGSSVTKTAAGGEEITVQGDVSDDLYDWLLEKYPEIPEDNLDMKDDTKKKA 198          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|35206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4W5_9STRA4.000e-131100.00Putative RNA binding protein Tma22 n=1 Tax=Tribone... [more]
A0A6H5K9G4_9PHAE3.020e-3949.02SUI1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S1G6N5_9STRA1.370e-2359.04Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0D6R9F6_ARACU2.920e-2335.00Translation machinery-associated protein 22 n=2 Ta... [more]
N1QGE6_SPHMS2.420e-2235.38Translation machinery-associated protein 22 n=1 Ta... [more]
A0A200QD80_9MAGN3.920e-2235.09Translation machinery-associated protein 22 n=1 Ta... [more]
A9NME9_PICSI9.370e-2232.74Translation machinery-associated protein 22 n=1 Ta... [more]
A0A2I2G6R7_9EURO1.760e-2134.23Translation machinery-associated protein 22 (Fragm... [more]
A0A1B8G7S0_9PEZI2.080e-2134.70Translation machinery-associated protein 22 n=13 T... [more]
A0A0D2E023_9EURO2.920e-2135.62Translation machinery-associated protein 22 n=10 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_19contigContig_19:404557..406844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|35206|CE35205_222
BRITEko00000,ko00001,ko01000,ko04131
KEGG Pathwayko00515,ko01100,map00515,map01100
KEGG koko:K19873
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0002190,GO:0002192,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0014070,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0023051,GO:0023052,GO:0023056,GO:0030518,GO:0030522,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032870,GO:0032984,GO:0032988,GO:0032991,GO:0033993,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0035075,GO:0035076,GO:0036314,GO:0036315,GO:0042127,GO:0042221,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043401,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0046626,GO:0046628,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0070992,GO:0071310,GO:0071383,GO:0071390,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0080090,GO:0097159,GO:0097305,GO:0097306,GO:0110017,GO:1900076,GO:1900078,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903008,GO:1990904,GO:2000112
Preferred nameDENR
Descriptiontranslation initiation factor activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0023@1|root,KOG3239@2759|Eukaryota
Evalue3.72e-41
Seed ortholog2880.D8LII3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranslation initiation factor SUI1
Ec32 orthologEc-18_003530.1
TranscriptId35528
TrackFilteredModels1
ProteinId35206
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35206gene_5491Tribonema minus UTEX_B_3156 geneContig_19 404557..406844 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_5491_1exon_5491_1Tribonema minus UTEX_B_3156 exonContig_19 404557..404845 +
exon_5491_2exon_5491_2Tribonema minus UTEX_B_3156 exonContig_19 406434..406844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_5491CDS_5491Tribonema minus UTEX_B_3156 CDSContig_19 404557..404845 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_5491UTR3_5491Tribonema minus UTEX_B_3156 three_prime_UTRContig_19 406796..406844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|35206Trimin1|35206|CE35205_222Tribonema minus UTEX_B_3156 polypeptideContig_19 404557..406795 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=700bp|location=Sequence derived from alignment at Contig_19:404557..406844+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGATGTCGATGCAGGCAGCAGGCCCACCCCTCAGACGGTGCTATACTG
TGGCGTATGCACGCTGCCATTAGAGTACTGCAGCTATGGGCCCCCCGCAC
AACAACCTTTGTGCAAAGCCTGGGCAGAAGAGAATTGCCCGGATCAAACG
GAGGGCGCGGCGCAGAAGCTGGAAGGGCTGAAGGTTTCTGCGAATGCAGA
GGGGGCAGCAGAAGGAGCAGAACCAGAAGCAGCAGCTACATCCGGCGGGC
GGGGGGATGACGGCGGCGGAGGAGATCAGACATCAGCAGCGGGCGAGGCG
GCGGGGGACGCAACCGCAGCGGGAGCGGAGGGCGACGAGCCCAAGCGCGC
GGCGCGCAAGGCGCCCAAGAAGAAGGCCGCGCCGGAGCCCATGGTCAAGA
TCGGGCGCGTCTCGCGCAACAAGCGCAAGTTCATCACGATCGTGGGCGGC
CTCGGCGCGTTCCCGCACGTCAAGCTCAAGGACGCGGCGAAGCAGATGGG
GCGCCAGTTCGCGTGCGGCTGCTCCGTCAACAAGACGGCGAGCGGCGCGG
AGGAGATCACGATACAGGGCGACGTGCTGTACGACCTGCCCGGCTTCCTC
GAGAGCGCGTTCGGGATACCCGCGGAGCGCATCAGCATCGTCGGCGAATA
GCGCCGCGGCGCGGCGCGCCTGCTTTTGTAAATGCATTGTCTAAGCGGCA
back to top

protein sequence of jgi.p|Trimin1|35206

>Trimin1|35206|CE35205_222 ID=Trimin1|35206|CE35205_222|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp
ADVDAGSRPTPQTVLYCGVCTLPLEYCSYGPPAQQPLCKAWAEENCPDQT
EGAAQKLEGLKVSANAEGAAEGAEPEAAATSGGRGDDGGGGDQTSAAGEA
AGDATAAGAEGDEPKRAARKAPKKKAAPEPMVKIGRVSRNKRKFITIVGG
LGAFPHVKLKDAAKQMGRQFACGCSVNKTASGAEEITIQGDVLYDLPGFL
ESAFGIPAERISIVGE*
back to top

mRNA from alignment at Contig_19:404557..406844+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2288bp|location=Sequence derived from alignment at Contig_19:404557..406844+ (Tribonema minus UTEX_B_3156 )
GCGGATGTCGATGCAGGCAGCAGGCCCACCCCTCAGACGGTGCTATACTG TGGCGTATGCACGCTGCCATTAGAGTACTGCAGCTATGGGCCCCCCGCAC AACAACCTTTGTGCAAAGCCTGGGCAGAAGAGAATTGCCCGGATCAAACG GAGGGCGCGGCGCAGAAGCTGGAAGGGCTGAAGGTTTCTGCGAATGCAGA GGGGGCAGCAGAAGGAGCAGAACCAGAAGCAGCAGCTACATCCGGCGGGC GGGGGGATGACGGCGGCGGAGGAGATCAGACATCAGCAGGTGAAGTTAGG CACAGAGAGGAATGTGTCTGCATTCTTATGTAGCAGTATGCCTTCTGGAT TCCAATATTTTTGGTGGGCCACTTGTATCTACGCCTCCAGGCATCAGTGT GTGAACTGCAGCAGAACACAGTAAGGGACACATACGCGGTAGTAAGTCAT TATGGGTCAAGTGCGGTGCTGCTGTGAAATTTGCAGCACTCAAAGAGCCT TGTGTTTCGTTACAGCACCCGCATGAGTTTGTTGATGCATTTCGATGACA TCAGGCACGTGTAGCGTCCCCTGCCAACTTTCAGCTGAAAGGTGGCGGGT GTGACAGCGCTCACCTGCTGCACTCTACTGCAGCGCTTGTCCCGCAGCAT GGCAGGGTCTAGCGCTCATTCAAGCCCACTCCTTCATAGAATGATTGATC AAGCAACAGTGAATGTAATCGGAGCAAGCAGTGAGGCGCTGGGAGAGACC ATGCTGGTGCATGTGTCAATCAACGTCGATGGACCTTGCCAACCATCCAC GCTGCACACTTTCTGGACTTGAAGCCTCTCACTTCTAGCCTTCTCATTGC ACCACAATGTGACCACATACAAGCGAGCCCCTTGCTGCTGCTGTCAGGCA CATGACCACGCTCGCGCCTGCATGTCTTGTCGATGAAGAGGTCAATGAGT ACTTTTTCTGCTCCCGGCTTGGTGATGCAAGACACCAGGCAAGCAAGGCT CTTAGTGGGACCAAGAGAGAGCATCAGTTCTGGCAAGTGTCCAAGCTTCA GTGTGCGTGTCATCATCGCTGCCGGCAAGCAGAAATGCTGCGTGTATGGT CGTCCACCCTACTATTAACCTTCATTCCGACTCTCACCCTGCCTCGAGAC TCTGGGCAACATACGAGCGCCATGAGTAGCTCTCGCTGGCCCCTCACACT TGGTGCTACCCTACTCCACTGGCGCAACGGGGGGGGGGAGGGGGGGGCTG CTGCAGCAGAGGGAGACAAGCCCATCTTTAAGGCCATTCAACAGTGATGC TGACCCATCCTTACCCTCATTCACACTCCAACTCTTGTCCTCGCTTCCAT GGCAACCCAACAGAGTCACACGCAGCTCGCGTGGTCCACCCAGCAGGCAA GGCGCGGAGGGAGCGGCGCGCGGCCCGCAGCCGCGGCGGCGGCGGCGGCG GCGGAGCGACGAGCCCAAGCGCAAGGCTCTCTAATGGGGACCCTCAGCCA ATCTACCGCCAACTCAATCCTATTCTTCTCTCCCAGAGTCACCAATTCAG GTTACTCACGATCAATCCTCCCCTCCTCCTTAAGCCACCCTACCCCAATC CCCCCACCCCCCCCCACACACATTTTTTACTCTCTCTAGCCACGCACTAG TGTTGCTCATGAAAAGTCCCCCCATCCTTCATCGGCGCAGCGGGCGAGGC AGGAGGCGACGCGGCGGCGGCGGCGGCGGCAGCGCAGGGCGACGACGAGC CCAAACGCGCGAGGCCCTGAAATGGTGACCTTCCGCCAACTTACCTCCAT CCCAACTTGAATCTTCTCTCCCCGGGTCACCCTTTTCTGTTGCTGACGAC CCATCTCCCCGTCTTCTACCGGCGCAGCGGGCGAGGCGGCGGGGGACGCA ACCGCAGCGGGAGCGGAGGGCGACGAGCCCAAGCGCGCGGCGCGCAAGGC GCCCAAGAAGAAGGCCGCGCCGGAGCCCATGGTCAAGATCGGGCGCGTCT CGCGCAACAAGCGCAAGTTCATCACGATCGTGGGCGGCCTCGGCGCGTTC CCGCACGTCAAGCTCAAGGACGCGGCGAAGCAGATGGGGCGCCAGTTCGC GTGCGGCTGCTCCGTCAACAAGACGGCGAGCGGCGCGGAGGAGATCACGA TACAGGGCGACGTGCTGTACGACCTGCCCGGCTTCCTCGAGAGCGCGTTC GGGATACCCGCGGAGCGCATCAGCATCGTCGGCGAATAGCGCCGCGGCGC GGCGCGCCTGCTTTTGTAAATGCATTGTCTAAGCGGCA
back to top

Coding sequence (CDS) from alignment at Contig_19:404557..406844+

>mRNA_5491 ID=mRNA_5491|Name=jgi.p|Trimin1|35206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_19:404557..406844+ (Tribonema minus UTEX_B_3156 )
GCGGATGTCGATGCAGGCAGCAGGCCCACCCCTCAGACGGTGCTATACTG
TGGCGTATGCACGCTGCCATTAGAGTACTGCAGCTATGGGCCCCCCGCAC
AACAACCTTTGTGCAAAGCCTGGGCAGAAGAGAATTGCCCGGATCAAACG
GAGGGCGCGGCGCAGAAGCTGGAAGGGCTGAAGGTTTCTGCGAATGCAGA
GGGGGCAGCAGAAGGAGCAGAACCAGAAGCAGCAGCTACATCCGGCGGGC
GGGGGGATGACGGCGGCGGAGGAGATCAGACATCAGCAGCGGGCGAGGCG
GCGGGGGACGCAACCGCAGCGGGAGCGGAGGGCGACGAGCCCAAGCGCGC
GGCGCGCAAGGCGCCCAAGAAGAAGGCCGCGCCGGAGCCCATGGTCAAGA
TCGGGCGCGTCTCGCGCAACAAGCGCAAGTTCATCACGATCGTGGGCGGC
CTCGGCGCGTTCCCGCACGTCAAGCTCAAGGACGCGGCGAAGCAGATGGG
GCGCCAGTTCGCGTGCGGCTGCTCCGTCAACAAGACGGCGAGCGGCGCGG
AGGAGATCACGATACAGGGCGACGTGCTGTACGACCTGCCCGGCTTCCTC
GAGAGCGCGTTCGGGATACCCGCGGAGCGCATCAGCATCGTCGGCGAATA
G
back to top