Homology
BLAST of jgi.p|Trimin1|144149 vs. uniprot
Match: A0A835YT03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT03_9STRA) HSP 1 Score: 142 bits (357), Expect = 9.610e-36 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 Query: 1 LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA 267
LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA
Sbjct: 1 LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA 89
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|144149|gw1.41.94.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 144471 |
| Track | FilteredModels1 |
| ProteinId | 144149 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4517 ID=mRNA_4517|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_41:917717..918838+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CTCGACGTGCGCGGCGATGCCAAGCTCACGGACCTGCCGGAGCTGCTCGT
GGGCACGCTCACGTCCCTGACTGTGCTCGCGCTGGGCGGCTGCAGCGAGC
TCTTGGTCGTGCCGGACGCGGTCGGTCGGCTGCCGTCTCTGACGGCACTG
GACCTCAGGGGGTGCTACAGCCTCCAACACCTGCACATGCCCGACGGCGT
CTTCAAATCCCTGAAGATCTTCGCCGTGGGCGTTCGCCATGCGGCGCTCC
CTTCATGGCTGACGGCGCTGCCCGCTTTGGAGAACCTCGATATCGAGGGG
TGCTACCTCCTCGAAGGTCTGCCGGACGCATTCAGCAGCTTGCAGGGGCT
CACGACTCTGCGCCTGGGGGGGAAGTTCGAGAGCCTCCCCGTGCCCATCT
GCAGCCTTCGCCGGCTGATAGAGCTCAGCCTGGCGAAGTGCGCAGCGCTC
TCCAGCCTACCGGAGTCCATCGGCAACCTCGCAGAGGGCAGACTTCAGAG
ACTCACGTTGGGCGGACGCTTGGTCGCGCTGCCGGACTCCATCGGCAACC
TGGGCAGCTTGAAGGCCCTCAGCGCGGTGGATTGCGCCCTGCTCACGGGG
CTGCCGGTGTCCATCAAGCACCTGCGGCAGCTAGAGGAGCTCGACATGGG
GGGATGCGCGAAACTCAGCAGCTTGCCGGAGTGCATCGGGGAGCTGTCGA
CTCTGAAGACGCTCGATCTGCGCGGATGCCAGGCGCTCAGGAGGCTCCCG
CAGTCGATCGTACAGCTCGAGAAGCTGACTCGCCTCGATCTCGGCGGCTG
CACGGGACTGTCGAGCCTGCCGGAGAGACTCGGGGCGCTGACGCGGCTGA
AGGAGCTCGACCTCAGCAACTGCGACCGGGTGCACTGGCTGCCGGACTCG
TTTCACCAGCTCTCGCAGCTGGGGGCGCTGAAGGTAAGCGGCTGCTCCAG
CCTGGAAGAGCTTCCCCAGTTGCCCGATCACCTCGTCGGAACGCTGGACA
GGAGCGCTCTGGAGGGGTGCGACAGCCTG back to topprotein sequence of jgi.p|Trimin1|144149 >Trimin1|144149|gw1.41.94.1 ID=Trimin1|144149|gw1.41.94.1|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVGRLPSLTAL
DLRGCYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTALPALENLDIEG
CYLLEGLPDAFSSLQGLTTLRLGGKFESLPVPICSLRRLIELSLAKCAAL
SSLPESIGNLAEGRLQRLTLGGRLVALPDSIGNLGSLKALSAVDCALLTG
LPVSIKHLRQLEELDMGGCAKLSSLPECIGELSTLKTLDLRGCQALRRLP
QSIVQLEKLTRLDLGGCTGLSSLPERLGALTRLKELDLSNCDRVHWLPDS
FHQLSQLGALKVSGCSSLEELPQLPDHLVGTLDRSALEGCDSL back to topmRNA from alignment at Contig_41:917717..918838+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4517 ID=mRNA_4517|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1122bp|location=Sequence derived from alignment at Contig_41:917717..918838+ (Tribonema minus UTEX_B_3156 )
CTCGACGTGCGCGGCGATGCCAAGCTCACGGACCTGCCGGAGCTGCTCGT
GGGCACGCTCACGTCCCTGACTGTGCTCGCGCTGGGCGGCTGCAGCGAGC
TCTTGGTCGTGCCGGACGCGGTCGGTCGGCTGCCGTCTCTGACGGCACTG
GACCTCAGGGGGTGCTACAGCCTCCAACACCTGCACATGCCCGACGGCGT
CTTCAAATCCCTGAAGATCTTCGCCGTGGGCGTTCGCCATGCGGCGCTCC
CTTCATGGCTGACGGCGCTGCCCGCTTTGGAGAACCTCGATATCGAGGGG
TGCTACCTCCTCGAAGGTCTGCCGGACGCATTCAGCAGCTTGCAGGGGCT
CACGACTCTGCGCCTGGGGGGGAAGTTCGAGAGCCTCCCCGTGCCCATCT
GCAGCCTTCGCCGGCTGATAGAGCTCAGCCTGGCGAAGTGCGCAGCGCTC
TCCAGCCTACCGGAGTCCATCGGCAACCTCGCAGTGGGCGATTACCGCGA
GTCCTCGCTGCGCCGTTTCTTGGACGACAGCGCGCCCGCCGCGAGAGATG
GAGAGCGACGCCTTCCCGGCAGGGAGGAGGGCAGACTTCAGAGACTCACG
TTGGGCGGACGCTTGGTCGCGCTGCCGGACTCCATCGGCAACCTGGGCAG
CTTGAAGGCCCTCAGCGCGGTGGATTGCGCCCTGCTCACGGGGCTGCCGG
TGTCCATCAAGCACCTGCGGCAGCTAGAGGAGCTCGACATGGGGGGATGC
GCGAAACTCAGCAGCTTGCCGGAGTGCATCGGGGAGCTGTCGACTCTGAA
GACGCTCGATCTGCGCGGATGCCAGGCGCTCAGGAGGCTCCCGCAGTCGA
TCGTACAGCTCGAGAAGCTGACTCGCCTCGATCTCGGCGGCTGCACGGGA
CTGTCGAGCCTGCCGGAGAGACTCGGGGCGCTGACGCGGCTGAAGGAGCT
CGACCTCAGCAACTGCGACCGGGTGCACTGGCTGCCGGACTCGTTTCACC
AGCTCTCGCAGCTGGGGGCGCTGAAGGTAAGCGGCTGCTCCAGCCTGGAA
GAGCTTCCCCAGTTGCCCGATCACCTCGTCGGAACGCTGGACAGGAGCGC
TCTGGAGGGGTGCGACAGCCTG back to topCoding sequence (CDS) from alignment at Contig_41:917717..918838+ >mRNA_4517 ID=mRNA_4517|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_41:917717..918838+ (Tribonema minus UTEX_B_3156 )
CTCGACGTGCGCGGCGATGCCAAGCTCACGGACCTGCCGGAGCTGCTCGT
GGGCACGCTCACGTCCCTGACTGTGCTCGCGCTGGGCGGCTGCAGCGAGC
TCTTGGTCGTGCCGGACGCGGTCGGTCGGCTGCCGTCTCTGACGGCACTG
GACCTCAGGGGGTGCTACAGCCTCCAACACCTGCACATGCCCGACGGCGT
CTTCAAATCCCTGAAGATCTTCGCCGTGGGCGTTCGCCATGCGGCGCTCC
CTTCATGGCTGACGGCGCTGCCCGCTTTGGAGAACCTCGATATCGAGGGG
TGCTACCTCCTCGAAGGTCTGCCGGACGCATTCAGCAGCTTGCAGGGGCT
CACGACTCTGCGCCTGGGGGGGAAGTTCGAGAGCCTCCCCGTGCCCATCT
GCAGCCTTCGCCGGCTGATAGAGCTCAGCCTGGCGAAGTGCGCAGCGCTC
TCCAGCCTACCGGAGTCCATCGGCAACCTCGCAGAGGGCAGACTTCAGAG
ACTCACGTTGGGCGGACGCTTGGTCGCGCTGCCGGACTCCATCGGCAACC
TGGGCAGCTTGAAGGCCCTCAGCGCGGTGGATTGCGCCCTGCTCACGGGG
CTGCCGGTGTCCATCAAGCACCTGCGGCAGCTAGAGGAGCTCGACATGGG
GGGATGCGCGAAACTCAGCAGCTTGCCGGAGTGCATCGGGGAGCTGTCGA
CTCTGAAGACGCTCGATCTGCGCGGATGCCAGGCGCTCAGGAGGCTCCCG
CAGTCGATCGTACAGCTCGAGAAGCTGACTCGCCTCGATCTCGGCGGCTG
CACGGGACTGTCGAGCCTGCCGGAGAGACTCGGGGCGCTGACGCGGCTGA
AGGAGCTCGACCTCAGCAACTGCGACCGGGTGCACTGGCTGCCGGACTCG
TTTCACCAGCTCTCGCAGCTGGGGGCGCTGAAGGTAAGCGGCTGCTCCAG
CCTGGAAGAGCTTCCCCAGTTGCCCGATCACCTCGTCGGAACGCTGGACA
GGAGCGCTCTGGAGGGGTGCGACAGCCTG back to top
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