Trimin1|144149|gw1.41.94.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|144149
Unique NameTrimin1|144149|gw1.41.94.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length343
Homology
[Close]
BLAST of jgi.p|Trimin1|144149 vs. uniprot
Match: A0A835YT03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT03_9STRA)

HSP 1 Score: 142 bits (357), Expect = 9.610e-36
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 
Query:    1 LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA 89
            LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA
Sbjct:    1 LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA 89
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144149 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YT03_9STRA9.610e-36100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 1..173
e-value: 1.1E-25
score: 91.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 174..331
e-value: 3.0E-41
score: 142.9
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 282..304
e-value: 0.077
score: 13.6
coord: 93..114
e-value: 0.55
score: 11.0
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 1..103
coord: 177..324
coord: 64..161
coord: 107..291
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 8..123
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 83..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_41contigContig_41:917717..918838 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144149mRNA_4517Tribonema minus UTEX_B_3156 mRNAContig_41 917717..918838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|144149|gw1.41.94.1 ID=Trimin1|144149|gw1.41.94.1|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVGRLPSLTAL
DLRGCYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTALPALENLDIEG
CYLLEGLPDAFSSLQGLTTLRLGGKFESLPVPICSLRRLIELSLAKCAAL
SSLPESIGNLAEGRLQRLTLGGRLVALPDSIGNLGSLKALSAVDCALLTG
LPVSIKHLRQLEELDMGGCAKLSSLPECIGELSTLKTLDLRGCQALRRLP
QSIVQLEKLTRLDLGGCTGLSSLPERLGALTRLKELDLSNCDRVHWLPDS
FHQLSQLGALKVSGCSSLEELPQLPDHLVGTLDRSALEGCDSL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt