mRNA_4517 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|144149
Unique Name	mRNA_4517
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|144149 vs. uniprot
Match: A0A835YT03_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT03_9STRA)

HSP 1 Score: 142 bits (357), Expect = 9.610e-36
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

Query:    1 LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA 267
            LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA
Sbjct:    1 LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVXXXXXXXXXXXXXXYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTA 89

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|144149 vs. uniprot

BLAST of jgi.p|Trimin1|144149 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YT03_9STRA	9.610e-36	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_41	contig	Contig_41:917717..918838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|144149\|gw1.41.94.1
Hectar predicted targeting category	other localisation
TranscriptId	144471
Track	FilteredModels1
ProteinId	144149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|144149	gene_4517	Tribonema minus UTEX_B_3156	gene	Contig_41 917717..918838 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4517_1	exon_4517_1	Tribonema minus UTEX_B_3156	exon	Contig_41 917717..918199 +
exon_4517_2	exon_4517_2	Tribonema minus UTEX_B_3156	exon	Contig_41 918293..918838 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4517	CDS_4517	Tribonema minus UTEX_B_3156	CDS	Contig_41 917717..918199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|144149	Trimin1\|144149\|gw1.41.94.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_41 917717..918838 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_41:917717..918838+
coding sequence from alignment at Contig_41:917717..918838+

spliced messenger RNA

>mRNA_4517 ID=mRNA_4517|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_41:917717..918838+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGACGTGCGCGGCGATGCCAAGCTCACGGACCTGCCGGAGCTGCTCGT
GGGCACGCTCACGTCCCTGACTGTGCTCGCGCTGGGCGGCTGCAGCGAGC
TCTTGGTCGTGCCGGACGCGGTCGGTCGGCTGCCGTCTCTGACGGCACTG
GACCTCAGGGGGTGCTACAGCCTCCAACACCTGCACATGCCCGACGGCGT
CTTCAAATCCCTGAAGATCTTCGCCGTGGGCGTTCGCCATGCGGCGCTCC
CTTCATGGCTGACGGCGCTGCCCGCTTTGGAGAACCTCGATATCGAGGGG
TGCTACCTCCTCGAAGGTCTGCCGGACGCATTCAGCAGCTTGCAGGGGCT
CACGACTCTGCGCCTGGGGGGGAAGTTCGAGAGCCTCCCCGTGCCCATCT
GCAGCCTTCGCCGGCTGATAGAGCTCAGCCTGGCGAAGTGCGCAGCGCTC
TCCAGCCTACCGGAGTCCATCGGCAACCTCGCAGAGGGCAGACTTCAGAG
ACTCACGTTGGGCGGACGCTTGGTCGCGCTGCCGGACTCCATCGGCAACC
TGGGCAGCTTGAAGGCCCTCAGCGCGGTGGATTGCGCCCTGCTCACGGGG
CTGCCGGTGTCCATCAAGCACCTGCGGCAGCTAGAGGAGCTCGACATGGG
GGGATGCGCGAAACTCAGCAGCTTGCCGGAGTGCATCGGGGAGCTGTCGA
CTCTGAAGACGCTCGATCTGCGCGGATGCCAGGCGCTCAGGAGGCTCCCG
CAGTCGATCGTACAGCTCGAGAAGCTGACTCGCCTCGATCTCGGCGGCTG
CACGGGACTGTCGAGCCTGCCGGAGAGACTCGGGGCGCTGACGCGGCTGA
AGGAGCTCGACCTCAGCAACTGCGACCGGGTGCACTGGCTGCCGGACTCG
TTTCACCAGCTCTCGCAGCTGGGGGCGCTGAAGGTAAGCGGCTGCTCCAG
CCTGGAAGAGCTTCCCCAGTTGCCCGATCACCTCGTCGGAACGCTGGACA
GGAGCGCTCTGGAGGGGTGCGACAGCCTG

protein sequence of jgi.p|Trimin1|144149

>Trimin1|144149|gw1.41.94.1 ID=Trimin1|144149|gw1.41.94.1|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
LDVRGDAKLTDLPELLVGTLTSLTVLALGGCSELLVVPDAVGRLPSLTAL
DLRGCYSLQHLHMPDGVFKSLKIFAVGVRHAALPSWLTALPALENLDIEG
CYLLEGLPDAFSSLQGLTTLRLGGKFESLPVPICSLRRLIELSLAKCAAL
SSLPESIGNLAEGRLQRLTLGGRLVALPDSIGNLGSLKALSAVDCALLTG
LPVSIKHLRQLEELDMGGCAKLSSLPECIGELSTLKTLDLRGCQALRRLP
QSIVQLEKLTRLDLGGCTGLSSLPERLGALTRLKELDLSNCDRVHWLPDS
FHQLSQLGALKVSGCSSLEELPQLPDHLVGTLDRSALEGCDSL

mRNA from alignment at Contig_41:917717..918838+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4517 ID=mRNA_4517|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1122bp|location=Sequence derived from alignment at Contig_41:917717..918838+ (Tribonema minus UTEX_B_3156 )
CTCGACGTGCGCGGCGATGCCAAGCTCACGGACCTGCCGGAGCTGCTCGT
GGGCACGCTCACGTCCCTGACTGTGCTCGCGCTGGGCGGCTGCAGCGAGC
TCTTGGTCGTGCCGGACGCGGTCGGTCGGCTGCCGTCTCTGACGGCACTG
GACCTCAGGGGGTGCTACAGCCTCCAACACCTGCACATGCCCGACGGCGT
CTTCAAATCCCTGAAGATCTTCGCCGTGGGCGTTCGCCATGCGGCGCTCC
CTTCATGGCTGACGGCGCTGCCCGCTTTGGAGAACCTCGATATCGAGGGG
TGCTACCTCCTCGAAGGTCTGCCGGACGCATTCAGCAGCTTGCAGGGGCT
CACGACTCTGCGCCTGGGGGGGAAGTTCGAGAGCCTCCCCGTGCCCATCT
GCAGCCTTCGCCGGCTGATAGAGCTCAGCCTGGCGAAGTGCGCAGCGCTC
TCCAGCCTACCGGAGTCCATCGGCAACCTCGCAGTGGGCGATTACCGCGA
GTCCTCGCTGCGCCGTTTCTTGGACGACAGCGCGCCCGCCGCGAGAGATG
GAGAGCGACGCCTTCCCGGCAGGGAGGAGGGCAGACTTCAGAGACTCACG
TTGGGCGGACGCTTGGTCGCGCTGCCGGACTCCATCGGCAACCTGGGCAG
CTTGAAGGCCCTCAGCGCGGTGGATTGCGCCCTGCTCACGGGGCTGCCGG
TGTCCATCAAGCACCTGCGGCAGCTAGAGGAGCTCGACATGGGGGGATGC
GCGAAACTCAGCAGCTTGCCGGAGTGCATCGGGGAGCTGTCGACTCTGAA
GACGCTCGATCTGCGCGGATGCCAGGCGCTCAGGAGGCTCCCGCAGTCGA
TCGTACAGCTCGAGAAGCTGACTCGCCTCGATCTCGGCGGCTGCACGGGA
CTGTCGAGCCTGCCGGAGAGACTCGGGGCGCTGACGCGGCTGAAGGAGCT
CGACCTCAGCAACTGCGACCGGGTGCACTGGCTGCCGGACTCGTTTCACC
AGCTCTCGCAGCTGGGGGCGCTGAAGGTAAGCGGCTGCTCCAGCCTGGAA
GAGCTTCCCCAGTTGCCCGATCACCTCGTCGGAACGCTGGACAGGAGCGC
TCTGGAGGGGTGCGACAGCCTG

Coding sequence (CDS) from alignment at Contig_41:917717..918838+

>mRNA_4517 ID=mRNA_4517|Name=jgi.p|Trimin1|144149|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_41:917717..918838+ (Tribonema minus UTEX_B_3156 )
CTCGACGTGCGCGGCGATGCCAAGCTCACGGACCTGCCGGAGCTGCTCGT
GGGCACGCTCACGTCCCTGACTGTGCTCGCGCTGGGCGGCTGCAGCGAGC
TCTTGGTCGTGCCGGACGCGGTCGGTCGGCTGCCGTCTCTGACGGCACTG
GACCTCAGGGGGTGCTACAGCCTCCAACACCTGCACATGCCCGACGGCGT
CTTCAAATCCCTGAAGATCTTCGCCGTGGGCGTTCGCCATGCGGCGCTCC
CTTCATGGCTGACGGCGCTGCCCGCTTTGGAGAACCTCGATATCGAGGGG
TGCTACCTCCTCGAAGGTCTGCCGGACGCATTCAGCAGCTTGCAGGGGCT
CACGACTCTGCGCCTGGGGGGGAAGTTCGAGAGCCTCCCCGTGCCCATCT
GCAGCCTTCGCCGGCTGATAGAGCTCAGCCTGGCGAAGTGCGCAGCGCTC
TCCAGCCTACCGGAGTCCATCGGCAACCTCGCAGAGGGCAGACTTCAGAG
ACTCACGTTGGGCGGACGCTTGGTCGCGCTGCCGGACTCCATCGGCAACC
TGGGCAGCTTGAAGGCCCTCAGCGCGGTGGATTGCGCCCTGCTCACGGGG
CTGCCGGTGTCCATCAAGCACCTGCGGCAGCTAGAGGAGCTCGACATGGG
GGGATGCGCGAAACTCAGCAGCTTGCCGGAGTGCATCGGGGAGCTGTCGA
CTCTGAAGACGCTCGATCTGCGCGGATGCCAGGCGCTCAGGAGGCTCCCG
CAGTCGATCGTACAGCTCGAGAAGCTGACTCGCCTCGATCTCGGCGGCTG
CACGGGACTGTCGAGCCTGCCGGAGAGACTCGGGGCGCTGACGCGGCTGA
AGGAGCTCGACCTCAGCAACTGCGACCGGGTGCACTGGCTGCCGGACTCG
TTTCACCAGCTCTCGCAGCTGGGGGCGCTGAAGGTAAGCGGCTGCTCCAG
CCTGGAAGAGCTTCCCCAGTTGCCCGATCACCTCGTCGGAACGCTGGACA
GGAGCGCTCTGGAGGGGTGCGACAGCCTG