Homology
BLAST of jgi.p|Trimin1|351291 vs. uniprot
Match:
A0A835YJV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV8_9STRA)
HSP 1 Score: 786 bits (2029), Expect = 1.200e-281
Identity = 542/547 (99.09%), Postives = 542/547 (99.09%), Query Frame = 1
Query: 70 MPLKDLKEKVKXXXXXXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK 1710
MPLKDLKEKVK XXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK
Sbjct: 1 MPLKDLKEKVKDVIHQXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK 547
BLAST of jgi.p|Trimin1|351291 vs. uniprot
Match:
A0A835YSW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW3_9STRA)
HSP 1 Score: 58.2 bits (139), Expect = 2.390e-5
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 583 TAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNM 924
T + PVSPP ES R+F+ G+++DARVW+PV+ EQ+R + TDTS RD + + S ISG XXXX SS + T + AK F+P + GN+
Sbjct: 96 TGKTPVSPPPESRREFVG--GEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXX-----------------DSSVGETVTLNSGAKAFVPRIFGNL 190
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351291 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.20e-281 / Id = 99.09 Expect = 2.39e-5 / Id = 38.60 Sequence A0A835YJV8_9STRA A0A835YSW3_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
ProteomeId Trimin1|351291|estExt_Genemark1.C_Ctg_860030 Hectar predicted targeting category other localisation TranscriptId 351613 Track FilteredModels1 ProteinId 351291
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA
>mRNA_13686 ID=mRNA_13686|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1713bp|location=Sequence derived from alignment at Contig_86:259402..262801+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CACGAAGCTAACCAGAGCTACCAGCGACAAAGCTTTCCATCCCTCGACAG back to top protein sequence of jgi.p|Trimin1|351291
>Trimin1|351291|estExt_Genemark1.C_Ctg_860030 ID=Trimin1|351291|estExt_Genemark1.C_Ctg_860030|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=548bp
MPLKDLKEKVKDVIHQGKDVISQSKEQAMTKGDKLHKQMAPAFERHNEKM back to top mRNA from alignment at Contig_86:259402..262801+
Legend: exon five_prime_UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13686 ID=mRNA_13686|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3400bp|location=Sequence derived from alignment at Contig_86:259402..262801+ (Tribonema minus UTEX_B_3156 )CACGAAGCTAACCAG AGCTACCAGCGACAAAGCTTTCCATCCCTCGACA
GCAACGTACCACATATCATC ATGCCTCTCAAGGATCTGAAGGAAAAG GTGAAGGATGTCATCCACCAGGGC
AAGGACGTCATCAGCCAGAGCAAGGAACAAGCCATGACCAAGGGCGATAA
GCTTCACAAGCAG ATGGCACCCGCCTTTGAGCGCCACAACGAG
AAGATGCGCACCAAGTCTGGCGCCACTGCCGACGACACCACCACCACCAC
CGCAGGCACATTCGCCACTCAGGACGCGGCGAACGCCGTCCCCTCTGAGC
CGCAGCTGGGGGTCTCCGAGGACGTCCCCTCGCGCGCGGCCCCCCTTGGT
GGCGACGCTCAGCTCAAGCCCACGGACGAGATGCCCAGCGGCGACATCGC
GAACGCGCTCGGGGCACCGCCCGCGCAGGCCTCGTCCGACTTCAACAAGT
CCTCTGACTTCAACAAGTCTTCCGACTTCAACCAGTCCTCTGACTTCAAC
AAGTCCTCCAACTTCAACCAGCCCTCCGACTTCAACAAGTCTTCCGACTT
CAACACGACGGCCACCACCACGGCAGAGCGCCCCGTGTCCCCGCCGCACG
AGTCCAGCAGGGACTTCCTCAACACCGACGCTGCCGCCGGCAGCAGCAGC
GATGCGCGTGTGTGGGACCCCGTGAGCACTGAGCAGTCCCGCAGCGTGAA
CACGGACACATCTTTCGGCCGCGATCACGACGTGCTCACGCGCGGCAGCA
GCAGCAACATCAGCGGCAGCGGCGGCGCCGGCGGCGCGGGCTTCGGCGTG
TACGGTGGCGAGGGCGCGCAGCAGCAGGACACTGGCAGCAGCAGCGAGCA
GCAGCACGGCACTTCTAGTGGTGCTGCCAAGCGCTTCATCCCCGACGTGA
TCGGCAACATGACCGGCCGCTCCTCCGACGAGTCGCGCGGCGCCGGCGAC
ATGCAGTCTGGCAGCGGCGGCGAGGCCCTGGGCCGCACGCCGCTGGGCGA
GACCACCACCTTCGGCGGCAGCAGCGGCGGCGGCGGCGGCGCATTCATGC
CGCGCGAGAGCGGCACCGCGCAGGCGGAGGGCGACCCGCTGCCCGTCGAC
GCCGACCTGCAGCGCGTCTCCGCCAGCGAGATCGCGCCTGCGGGCGGCAG
CAGCAGCGGCACCGGCAGCGGTGGCGCGCAGCAGACCGAGCAGCTGCCCT
ACGGCGACAGTGACAAGCTGCGCGGCGGCACGAGCGGCGACGTCTTCGGC
GCGTCCGCCACTGGCAACGTCGCCCCCTCCGAGGCGCCCGCGGTGGCGGC
GGGCGAGATGCCACTGCTCAGCAAGACGGGCGGTGCGTCGTGGCGCGATC
AGGGCAGCATCAGCCACTCGCACCAGTTCCGCGACGCTGCCGGCGGCGAC
CGCAGCGGCGCTCAGCAGTCTGGGCTGAGCGCGCCCACGGAGGAGGAGAT
GCCTTCGTCATCGCAGCAGCAGCAGCAGCAGTTCAGCAGCGAGCAGCAGG
CGACGAGCGCTGCTGCCGTGGACCCATTCGCCACGGCCAGCAGCAACCTC
ACGCCTTCTGCGCCCGTTGCGTCGACCGGCGAGCCGCCACTGCTGGCCGC
CAGCAGCGAGCAGCAGCAGCAGCAGCAGGCTGCACCCGCGAGCACCGAGC
CGTCCCTGCTCGAGAGGGTGAGCAGCGTGTTCACGCGCAGCACCAAGTAA
back to top Coding sequence (CDS) from alignment at Contig_86:259402..262801+
>mRNA_13686 ID=mRNA_13686|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1644bp|location=Sequence derived from alignment at Contig_86:259402..262801+ (Tribonema minus UTEX_B_3156 ) back to top