Trimin1|351291|estExt_Genemark1.C_Ctg_860030 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351291
Unique Name	Trimin1\|351291\|estExt_Genemark1.C_Ctg_860030
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	548

Homology

[Close]

BLAST of jgi.p|Trimin1|351291 vs. uniprot
Match: A0A835YJV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV8_9STRA)

HSP 1 Score: 797 bits (2059), Expect = 1.350e-286
Identity = 547/547 (100.00%), Postives = 547/547 (100.00%), Query Frame = 0

Query:    1 MPLKDLKEKVKDVIHQXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK 547
            MPLKDLKEKVKDVIHQXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK
Sbjct:    1 MPLKDLKEKVKDVIHQXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK 547

[Close]

BLAST of jgi.p|Trimin1|351291 vs. uniprot
Match: A0A835YSW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.240e-5
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 0

Query:  172 TAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNM 285
            T + PVSPP ES R+F+      G+++DARVW+PV+ EQ+R + TDTS  RD + +    S  ISG  XXXX                  SS  +  T +  AK F+P + GN+
Sbjct:   96 TGKTPVSPPPESRREFVG--GEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXX-----------------DSSVGETVTLNSGAKAFVPRIFGNL 190

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351291 vs. uniprot

BLAST of jgi.p|Trimin1|351291 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YJV8_9STRA	1.350e-286	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YSW3_9STRA	2.240e-5	38.60	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..504
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 359..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 512..547
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..547
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_86	contig	Contig_86:259672..262801 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351291	mRNA_13686	Tribonema minus UTEX_B_3156	mRNA	Contig_86 259402..262801 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351291|estExt_Genemark1.C_Ctg_860030 ID=Trimin1|351291|estExt_Genemark1.C_Ctg_860030|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=548bp
MPLKDLKEKVKDVIHQGKDVISQSKEQAMTKGDKLHKQMAPAFERHNEKM
RTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGD
AQLKPTDEMPSGDIANALGAPPAQASSDFNKSSDFNKSSDFNQSSDFNKS
SNFNQPSDFNKSSDFNTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDA
RVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGGAGGAGFGVYG
GEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQ
SGSGGEALGRTPLGETTTFGGSSGGGGGAFMPRESGTAQAEGDPLPVDAD
LQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGAS
ATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRS
GAQQSGLSAPTEEEMPSSSQQQQQQFSSEQQATSAAAVDPFATASSNLTP
SAPVASTGEPPLLAASSEQQQQQQAAPASTEPSLLERVSSVFTRSTK*