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Homology
BLAST of jgi.p|Trimin1|351291 vs. uniprot
Match: A0A835YJV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV8_9STRA) HSP 1 Score: 786 bits (2029), Expect = 1.200e-281 Identity = 542/547 (99.09%), Postives = 542/547 (99.09%), Query Frame = 1
Query: 70 MPLKDLKEKVKXXXXXXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK 1710
MPLKDLKEKVK XXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK
Sbjct: 1 MPLKDLKEKVKDVIHQXXXXXXXXKEQAMTKGDKLHKQMAPAFERHNEKMRTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGDAQLKPTDEMPSGDIANALGAPPAQASSDFNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQSGSGGEALGRTPLGETTTFGXXXXXXXXAFMPRESGTAQAEGDPLPVDADLQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGASATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRSGAQQSGLSAPTEEEXXXXXXXXXXXXXXXXXXXXXXXXDPFATASSNLTPSAPVASTGXXXXXXXXXXXXXXXXXAPASTEPSLLERVSSVFTRSTK 547
BLAST of jgi.p|Trimin1|351291 vs. uniprot
Match: A0A835YSW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW3_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.390e-5 Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 1
Query: 583 TAERPVSPPHESSRDFLNTDAAAGSSSDARVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGXXXXXXFGVYGGEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNM 924
T + PVSPP ES R+F+ G+++DARVW+PV+ EQ+R + TDTS RD + + S ISG XXXX SS + T + AK F+P + GN+
Sbjct: 96 TGKTPVSPPPESRREFVG--GEGGANNDARVWEPVTGEQTREIGTDTSLVRDTEAVAGERSGGISGXXXXXX-----------------DSSVGETVTLNSGAKAFVPRIFGNL 190
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|351291|estExt_Genemark1.C_Ctg_860030 |
Hectar predicted targeting category | other localisation |
TranscriptId | 351613 |
Track | FilteredModels1 |
ProteinId | 351291 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13686 ID=mRNA_13686|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1713bp|location=Sequence derived from alignment at Contig_86:259402..262801+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CACGAAGCTAACCAGAGCTACCAGCGACAAAGCTTTCCATCCCTCGACAG CAACGTACCACATATCATCATGCCTCTCAAGGATCTGAAGGAAAAGGTGA AGGATGTCATCCACCAGGGCAAGGACGTCATCAGCCAGAGCAAGGAACAA GCCATGACCAAGGGCGATAAGCTTCACAAGCAGATGGCACCCGCCTTTGA GCGCCACAACGAGAAGATGCGCACCAAGTCTGGCGCCACTGCCGACGACA CCACCACCACCACCGCAGGCACATTCGCCACTCAGGACGCGGCGAACGCC GTCCCCTCTGAGCCGCAGCTGGGGGTCTCCGAGGACGTCCCCTCGCGCGC GGCCCCCCTTGGTGGCGACGCTCAGCTCAAGCCCACGGACGAGATGCCCA GCGGCGACATCGCGAACGCGCTCGGGGCACCGCCCGCGCAGGCCTCGTCC GACTTCAACAAGTCCTCTGACTTCAACAAGTCTTCCGACTTCAACCAGTC CTCTGACTTCAACAAGTCCTCCAACTTCAACCAGCCCTCCGACTTCAACA AGTCTTCCGACTTCAACACGACGGCCACCACCACGGCAGAGCGCCCCGTG TCCCCGCCGCACGAGTCCAGCAGGGACTTCCTCAACACCGACGCTGCCGC CGGCAGCAGCAGCGATGCGCGTGTGTGGGACCCCGTGAGCACTGAGCAGT CCCGCAGCGTGAACACGGACACATCTTTCGGCCGCGATCACGACGTGCTC ACGCGCGGCAGCAGCAGCAACATCAGCGGCAGCGGCGGCGCCGGCGGCGC GGGCTTCGGCGTGTACGGTGGCGAGGGCGCGCAGCAGCAGGACACTGGCA GCAGCAGCGAGCAGCAGCACGGCACTTCTAGTGGTGCTGCCAAGCGCTTC ATCCCCGACGTGATCGGCAACATGACCGGCCGCTCCTCCGACGAGTCGCG CGGCGCCGGCGACATGCAGTCTGGCAGCGGCGGCGAGGCCCTGGGCCGCA CGCCGCTGGGCGAGACCACCACCTTCGGCGGCAGCAGCGGCGGCGGCGGC GGCGCATTCATGCCGCGCGAGAGCGGCACCGCGCAGGCGGAGGGCGACCC GCTGCCCGTCGACGCCGACCTGCAGCGCGTCTCCGCCAGCGAGATCGCGC CTGCGGGCGGCAGCAGCAGCGGCACCGGCAGCGGTGGCGCGCAGCAGACC GAGCAGCTGCCCTACGGCGACAGTGACAAGCTGCGCGGCGGCACGAGCGG CGACGTCTTCGGCGCGTCCGCCACTGGCAACGTCGCCCCCTCCGAGGCGC CCGCGGTGGCGGCGGGCGAGATGCCACTGCTCAGCAAGACGGGCGGTGCG TCGTGGCGCGATCAGGGCAGCATCAGCCACTCGCACCAGTTCCGCGACGC TGCCGGCGGCGACCGCAGCGGCGCTCAGCAGTCTGGGCTGAGCGCGCCCA CGGAGGAGGAGATGCCTTCGTCATCGCAGCAGCAGCAGCAGCAGTTCAGC AGCGAGCAGCAGGCGACGAGCGCTGCTGCCGTGGACCCATTCGCCACGGC CAGCAGCAACCTCACGCCTTCTGCGCCCGTTGCGTCGACCGGCGAGCCGC CACTGCTGGCCGCCAGCAGCGAGCAGCAGCAGCAGCAGCAGGCTGCACCC GCGAGCACCGAGCCGTCCCTGCTCGAGAGGGTGAGCAGCGTGTTCACGCG CAGCACCAAGTAA back to topprotein sequence of jgi.p|Trimin1|351291 >Trimin1|351291|estExt_Genemark1.C_Ctg_860030 ID=Trimin1|351291|estExt_Genemark1.C_Ctg_860030|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=548bp
MPLKDLKEKVKDVIHQGKDVISQSKEQAMTKGDKLHKQMAPAFERHNEKM RTKSGATADDTTTTTAGTFATQDAANAVPSEPQLGVSEDVPSRAAPLGGD AQLKPTDEMPSGDIANALGAPPAQASSDFNKSSDFNKSSDFNQSSDFNKS SNFNQPSDFNKSSDFNTTATTTAERPVSPPHESSRDFLNTDAAAGSSSDA RVWDPVSTEQSRSVNTDTSFGRDHDVLTRGSSSNISGSGGAGGAGFGVYG GEGAQQQDTGSSSEQQHGTSSGAAKRFIPDVIGNMTGRSSDESRGAGDMQ SGSGGEALGRTPLGETTTFGGSSGGGGGAFMPRESGTAQAEGDPLPVDAD LQRVSASEIAPAGGSSSGTGSGGAQQTEQLPYGDSDKLRGGTSGDVFGAS ATGNVAPSEAPAVAAGEMPLLSKTGGASWRDQGSISHSHQFRDAAGGDRS GAQQSGLSAPTEEEMPSSSQQQQQQFSSEQQATSAAAVDPFATASSNLTP SAPVASTGEPPLLAASSEQQQQQQAAPASTEPSLLERVSSVFTRSTK* back to topmRNA from alignment at Contig_86:259402..262801+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_13686 ID=mRNA_13686|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3400bp|location=Sequence derived from alignment at Contig_86:259402..262801+ (Tribonema minus UTEX_B_3156 ) CACGAAGCTAACCAGGTAAGGCCGGGGAGCCTGTGCGATGCAGCTAGTTG
TGTTCCTGGTTTTGTTTCGTGCTGCCGTTGACCCCTGGCTCTTGCTCCAC
CCCCTGTTCGTTTGCTGATTCCGAGACGGTGCATGATTGCTCGCGACAGC
GGTACACACATGCTGCCGAGCAGCGAAGGCCTGCGCTAATTATGCGATGT
TCTCTGATGCACGCAGAGCTACCAGCGACAAAGCTTTCCATCCCTCGACA
GCAACGTACCACATATCATCATGCCTCTCAAGGATCTGAAGGAAAAGGTA
CGTGCCACGGCAGCGGAGTTTTTGGGCAGCTTTATCATCATTGCATTGTT
CTCGTTAAGCCATGTGTCACTGCATTGACCCAGCCTGGGCTCGCGTTTGT
CGACATATCCAATCTGCAGCGTTTCGCATACATTCAGAGCAACCTCCAGC
TTTCAGCCAGGTCTCAGTTGAAGTAGACATAAATGAATTGAAGCATAACA
TGTGTGTGGGCTCTTTTCCTCCGCGCATGTAGGTCAAGTCTGCGATCGGC
AAGCTTGAAGTAGACATAAAAGGATTGAAGCATAACATTGTTGGCTCTTT
TCCTCCGCGCGTGTAGGTCAAGTTTGCGATCGGCAAGCTTGAAGTTGACA
TAAATGGATTGAAGCATAACATTGTGGGCTCTTTTCCTCCGCGCGTGTAG
GTCAAGTTTGCGATCGGCAAGCAAAAGTGTACTACAGGCGCTCCCTTCAG
TGTACACATCTGTGGATGTGTACATTGCATGCACGCATGTAACACATCAA
CACACAGTATGACCTTGGCATGTGCTCCACTTGCATGAGCTTATGTTCCC
GGGTACATTCTCTTTCTCAACAACAGGTGAAGGATGTCATCCACCAGGGC
AAGGACGTCATCAGCCAGAGCAAGGAACAAGCCATGACCAAGGGCGATAA
GCTTCACAAGCAGGTCAGTGATGATGACAACATGCTAGCCTGACACAGCG
GGTGCCTGAACACACAAGGTATTTGGCATGGTGGCATACATGGCATTCAG
GAAAGGGTTGGATCATACACAACACTCGCAAGCTAGCATTCCATGTAGTT
TTTCACATACAACACTCTTGCTCAAGGGTGCTACATAGACAGTGCTACGC
CAATGTCGTATTCAGCTCAAACTACAGCCTCAAAGTCACCAGATTTGCTA
TGATTGCATTATAGGAATCAAAAGGGTATCGTGTTATTTGCACGCAGTCC
TCAGTGAGCTGATTCATGTACCCTTCGTCAGCCAGGAAAAGAAATCATGG
CACTGTTCTAGAGCACAGTTTAGAGCTACATCATCGCTCTGTATGCAGGA
TTTACAAGATTTAGGTTCTGCATATCAGTGGGCCATGACCAAGGGGTCTG
CGCTTCACAGACAGGTGCGGCAGCGGCCAACCTCTTGAGCAAACTGTTTA
CCTTCACGTTAAGATCAGCAGTGGCTGCTGCCGGAGTTTTTCTTCTGTGG
CTGCTTTTTAGAAATGCAGCAGCATTTTGGACTTGTGCGTTTCAAATTGT
GAATGTGTTTTATGCTGAGGAATTTGTCGGTGCATCTTGTATGCCAATTT
ATTGCAAACGCTTGTAAACTTTGAGTTACAAATCTGTAACGAGTGTTGGT
TGGAACTGGATTACCCCCCCCCCCCCCCCCCCCCCTTTCATCAAGATTCC
ATCATGAGGGAGGGGTCGCGGTTTTTGGCTTCATGTGCAGACTCACCATT
CCCTCACAAGCGATGCACGTACTTTTATGAACACGCGTAAGGTATGATAG
GCGTCGTGTGAGCAATCAGCCCACTCACTGCCGCCCCTCAACCGCCCCCC
CTCTCCAACCTTTACCGCAGATGGCACCCGCCTTTGAGCGCCACAACGAG
AAGATGCGCACCAAGTCTGGCGCCACTGCCGACGACACCACCACCACCAC
CGCAGGCACATTCGCCACTCAGGACGCGGCGAACGCCGTCCCCTCTGAGC
CGCAGCTGGGGGTCTCCGAGGACGTCCCCTCGCGCGCGGCCCCCCTTGGT
GGCGACGCTCAGCTCAAGCCCACGGACGAGATGCCCAGCGGCGACATCGC
GAACGCGCTCGGGGCACCGCCCGCGCAGGCCTCGTCCGACTTCAACAAGT
CCTCTGACTTCAACAAGTCTTCCGACTTCAACCAGTCCTCTGACTTCAAC
AAGTCCTCCAACTTCAACCAGCCCTCCGACTTCAACAAGTCTTCCGACTT
CAACACGACGGCCACCACCACGGCAGAGCGCCCCGTGTCCCCGCCGCACG
AGTCCAGCAGGGACTTCCTCAACACCGACGCTGCCGCCGGCAGCAGCAGC
GATGCGCGTGTGTGGGACCCCGTGAGCACTGAGCAGTCCCGCAGCGTGAA
CACGGACACATCTTTCGGCCGCGATCACGACGTGCTCACGCGCGGCAGCA
GCAGCAACATCAGCGGCAGCGGCGGCGCCGGCGGCGCGGGCTTCGGCGTG
TACGGTGGCGAGGGCGCGCAGCAGCAGGACACTGGCAGCAGCAGCGAGCA
GCAGCACGGCACTTCTAGTGGTGCTGCCAAGCGCTTCATCCCCGACGTGA
TCGGCAACATGACCGGCCGCTCCTCCGACGAGTCGCGCGGCGCCGGCGAC
ATGCAGTCTGGCAGCGGCGGCGAGGCCCTGGGCCGCACGCCGCTGGGCGA
GACCACCACCTTCGGCGGCAGCAGCGGCGGCGGCGGCGGCGCATTCATGC
CGCGCGAGAGCGGCACCGCGCAGGCGGAGGGCGACCCGCTGCCCGTCGAC
GCCGACCTGCAGCGCGTCTCCGCCAGCGAGATCGCGCCTGCGGGCGGCAG
CAGCAGCGGCACCGGCAGCGGTGGCGCGCAGCAGACCGAGCAGCTGCCCT
ACGGCGACAGTGACAAGCTGCGCGGCGGCACGAGCGGCGACGTCTTCGGC
GCGTCCGCCACTGGCAACGTCGCCCCCTCCGAGGCGCCCGCGGTGGCGGC
GGGCGAGATGCCACTGCTCAGCAAGACGGGCGGTGCGTCGTGGCGCGATC
AGGGCAGCATCAGCCACTCGCACCAGTTCCGCGACGCTGCCGGCGGCGAC
CGCAGCGGCGCTCAGCAGTCTGGGCTGAGCGCGCCCACGGAGGAGGAGAT
GCCTTCGTCATCGCAGCAGCAGCAGCAGCAGTTCAGCAGCGAGCAGCAGG
CGACGAGCGCTGCTGCCGTGGACCCATTCGCCACGGCCAGCAGCAACCTC
ACGCCTTCTGCGCCCGTTGCGTCGACCGGCGAGCCGCCACTGCTGGCCGC
CAGCAGCGAGCAGCAGCAGCAGCAGCAGGCTGCACCCGCGAGCACCGAGC
CGTCCCTGCTCGAGAGGGTGAGCAGCGTGTTCACGCGCAGCACCAAGTAA
back to topCoding sequence (CDS) from alignment at Contig_86:259402..262801+ >mRNA_13686 ID=mRNA_13686|Name=jgi.p|Trimin1|351291|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1644bp|location=Sequence derived from alignment at Contig_86:259402..262801+ (Tribonema minus UTEX_B_3156 ) ATGCCTCTCAAGGATCTGAAGGAAAAGGTGAAGGATGTCATCCACCAGGG CAAGGACGTCATCAGCCAGAGCAAGGAACAAGCCATGACCAAGGGCGATA AGCTTCACAAGCAGATGGCACCCGCCTTTGAGCGCCACAACGAGAAGATG CGCACCAAGTCTGGCGCCACTGCCGACGACACCACCACCACCACCGCAGG CACATTCGCCACTCAGGACGCGGCGAACGCCGTCCCCTCTGAGCCGCAGC TGGGGGTCTCCGAGGACGTCCCCTCGCGCGCGGCCCCCCTTGGTGGCGAC GCTCAGCTCAAGCCCACGGACGAGATGCCCAGCGGCGACATCGCGAACGC GCTCGGGGCACCGCCCGCGCAGGCCTCGTCCGACTTCAACAAGTCCTCTG ACTTCAACAAGTCTTCCGACTTCAACCAGTCCTCTGACTTCAACAAGTCC TCCAACTTCAACCAGCCCTCCGACTTCAACAAGTCTTCCGACTTCAACAC GACGGCCACCACCACGGCAGAGCGCCCCGTGTCCCCGCCGCACGAGTCCA GCAGGGACTTCCTCAACACCGACGCTGCCGCCGGCAGCAGCAGCGATGCG CGTGTGTGGGACCCCGTGAGCACTGAGCAGTCCCGCAGCGTGAACACGGA CACATCTTTCGGCCGCGATCACGACGTGCTCACGCGCGGCAGCAGCAGCA ACATCAGCGGCAGCGGCGGCGCCGGCGGCGCGGGCTTCGGCGTGTACGGT GGCGAGGGCGCGCAGCAGCAGGACACTGGCAGCAGCAGCGAGCAGCAGCA CGGCACTTCTAGTGGTGCTGCCAAGCGCTTCATCCCCGACGTGATCGGCA ACATGACCGGCCGCTCCTCCGACGAGTCGCGCGGCGCCGGCGACATGCAG TCTGGCAGCGGCGGCGAGGCCCTGGGCCGCACGCCGCTGGGCGAGACCAC CACCTTCGGCGGCAGCAGCGGCGGCGGCGGCGGCGCATTCATGCCGCGCG AGAGCGGCACCGCGCAGGCGGAGGGCGACCCGCTGCCCGTCGACGCCGAC CTGCAGCGCGTCTCCGCCAGCGAGATCGCGCCTGCGGGCGGCAGCAGCAG CGGCACCGGCAGCGGTGGCGCGCAGCAGACCGAGCAGCTGCCCTACGGCG ACAGTGACAAGCTGCGCGGCGGCACGAGCGGCGACGTCTTCGGCGCGTCC GCCACTGGCAACGTCGCCCCCTCCGAGGCGCCCGCGGTGGCGGCGGGCGA GATGCCACTGCTCAGCAAGACGGGCGGTGCGTCGTGGCGCGATCAGGGCA GCATCAGCCACTCGCACCAGTTCCGCGACGCTGCCGGCGGCGACCGCAGC GGCGCTCAGCAGTCTGGGCTGAGCGCGCCCACGGAGGAGGAGATGCCTTC GTCATCGCAGCAGCAGCAGCAGCAGTTCAGCAGCGAGCAGCAGGCGACGA GCGCTGCTGCCGTGGACCCATTCGCCACGGCCAGCAGCAACCTCACGCCT TCTGCGCCCGTTGCGTCGACCGGCGAGCCGCCACTGCTGGCCGCCAGCAG CGAGCAGCAGCAGCAGCAGCAGGCTGCACCCGCGAGCACCGAGCCGTCCC TGCTCGAGAGGGTGAGCAGCGTGTTCACGCGCAGCACCAAGTAA back to top
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