mRNA_13086 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A835YH74_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH74_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.490e-42 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 Query: 1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV 195 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV Sbjct: 1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV 65
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A835YUD8_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD8_9STRA) HSP 1 Score: 118 bits (296), Expect = 9.560e-34 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 Query: 1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 165 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE Sbjct: 14 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 68
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A7S2R3W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3W8_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.540e-24 Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1 Query: 19 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAE 189 D LP+AHTCFFS+NLP+YS D +MA RL+YAMYNCIEMDADFRLA+ E TGWG+ + Sbjct: 85 DVFLPKAHTCFFSLNLPKYSADEIMATRLRYAMYNCIEMDADFRLAENEMTGWGDLD 141
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A6U3W0M3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3W0M3_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 7.470e-24 Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 Query: 13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV 195 S D LP+AHTCFFS+NLPRYS D +MAE+L++AMYNCIEMDADFRLAD+E GWG+ + + Sbjct: 160 SPDTYLPKAHTCFFSLNLPRYSSDAIMAEKLRFAMYNCIEMDADFRLADSEMGGWGDIDEI 220
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A6H5JS79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS79_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.040e-21 Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1 Query: 19 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGN 183 D+ LP+AHTCFFSINLPRYS D +MA +L Y MYNCIEMDADFRLAD E GW N Sbjct: 4533 DRFLPKAHTCFFSINLPRYSSDEIMANKLSYTMYNCIEMDADFRLADNEMPGWEN 4587
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A2D4CIK0_PYTIN (HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIK0_PYTIN) HSP 1 Score: 87.8 bits (216), Expect = 8.160e-19 Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177 + DQQLP++HTCFF++ LPRYS D + ++L YA++NC+EMD DFRLADTE TGW Sbjct: 386 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTEMTGW 440
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A2D4CHI1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHI1_PYTIN) HSP 1 Score: 87.8 bits (216), Expect = 9.960e-19 Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177 + DQQLP++HTCFF++ LPRYS D + ++L YA++NC+EMD DFRLADTE TGW Sbjct: 912 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTEMTGW 966
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A2D4CHZ9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHZ9_PYTIN) HSP 1 Score: 87.8 bits (216), Expect = 9.980e-19 Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177 + DQQLP++HTCFF++ LPRYS D + ++L YA++NC+EMD DFRLADTE TGW Sbjct: 1153 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTEMTGW 1207
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A7S2RG93_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG93_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.370e-18 Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1 Query: 19 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEV 192 D+ LP+AHTCFF+++LPRY+ D VM E+L YA+ NC+EMDADFRL +TE TGW + +V Sbjct: 1813 DEWLPKAHTCFFALSLPRYTSDEVMKEKLLYAIQNCLEMDADFRLTETEMTGWDDQQV 1870
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: W2PWJ9_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PWJ9_PHYPN) HSP 1 Score: 87.0 bits (214), Expect = 1.880e-18 Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 Query: 16 VDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177 +D Q+P++HTCFF++ LPRYS D++ ERL YA+ NC+EMD DFRLADTE TGW Sbjct: 4492 MDSQMPKSHTCFFALQLPRYSSDDICRERLLYAVRNCVEMDGDFRLADTEMTGW 4545 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13086 ID=mRNA_13086|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_96:509884..510078- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GATGCCGATGTGTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTTback to top protein sequence of jgi.p|Trimin1|144692 >Trimin1|144692|gw1.96.41.1 ID=Trimin1|144692|gw1.96.41.1|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRback to top mRNA from alignment at Contig_96:509884..510078- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13086 ID=mRNA_13086|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_96:509884..510078- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:509884..510078- >mRNA_13086 ID=mRNA_13086|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_96:509884..510078- (Tribonema minus UTEX_B_3156 )back to top |