mRNA_13086 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|144692
Unique NamemRNA_13086
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A835YH74_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH74_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.490e-42
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV 195
            DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV
Sbjct:    1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV 65
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A835YUD8_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 9.560e-34
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 165
            DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE
Sbjct:   14 DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTE 68
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A7S2R3W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3W8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.540e-24
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   19 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAE 189
            D  LP+AHTCFFS+NLP+YS D +MA RL+YAMYNCIEMDADFRLA+ E TGWG+ +
Sbjct:   85 DVFLPKAHTCFFSLNLPKYSADEIMATRLRYAMYNCIEMDADFRLAENEMTGWGDLD 141
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A6U3W0M3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3W0M3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.470e-24
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEVV 195
            S D  LP+AHTCFFS+NLPRYS D +MAE+L++AMYNCIEMDADFRLAD+E  GWG+ + +
Sbjct:  160 SPDTYLPKAHTCFFSLNLPRYSSDAIMAEKLRFAMYNCIEMDADFRLADSEMGGWGDIDEI 220
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A6H5JS79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS79_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.040e-21
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   19 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGN 183
            D+ LP+AHTCFFSINLPRYS D +MA +L Y MYNCIEMDADFRLAD E  GW N
Sbjct: 4533 DRFLPKAHTCFFSINLPRYSSDEIMANKLSYTMYNCIEMDADFRLADNEMPGWEN 4587
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A2D4CIK0_PYTIN (HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIK0_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 8.160e-19
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177
            + DQQLP++HTCFF++ LPRYS D +  ++L YA++NC+EMD DFRLADTE TGW
Sbjct:  386 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTEMTGW 440
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A2D4CHI1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHI1_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 9.960e-19
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177
            + DQQLP++HTCFF++ LPRYS D +  ++L YA++NC+EMD DFRLADTE TGW
Sbjct:  912 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTEMTGW 966
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A2D4CHZ9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHZ9_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 9.980e-19
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   13 SVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177
            + DQQLP++HTCFF++ LPRYS D +  ++L YA++NC+EMD DFRLADTE TGW
Sbjct: 1153 TADQQLPKSHTCFFALQLPRYSTDEICRKQLLYAIHNCVEMDGDFRLADTEMTGW 1207
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: A0A7S2RG93_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG93_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.370e-18
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:   19 DQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGWGNAEV 192
            D+ LP+AHTCFF+++LPRY+ D VM E+L YA+ NC+EMDADFRL +TE TGW + +V
Sbjct: 1813 DEWLPKAHTCFFALSLPRYTSDEVMKEKLLYAIQNCLEMDADFRLTETEMTGWDDQQV 1870
[Close]
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Match: W2PWJ9_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PWJ9_PHYPN)

HSP 1 Score: 87.0 bits (214), Expect = 1.880e-18
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   16 VDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFRLADTETTGW 177
            +D Q+P++HTCFF++ LPRYS D++  ERL YA+ NC+EMD DFRLADTE TGW
Sbjct: 4492 MDSQMPKSHTCFFALQLPRYSSDDICRERLLYAVRNCVEMDGDFRLADTEMTGW 4545
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144692 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YH74_9STRA2.490e-42100.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YUD8_9STRA9.560e-34100.00HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2R3W8_9STRA2.540e-2471.93Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6U3W0M3_9STRA7.470e-2468.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5JS79_9PHAE5.040e-2174.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D4CIK0_PYTIN8.160e-1963.64HECT E3 ubiquitin ligase, putative n=1 Tax=Pythium... [more]
A0A2D4CHI1_PYTIN9.960e-1963.64Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A2D4CHZ9_PYTIN9.980e-1963.64Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2RG93_9STRA1.370e-1862.07Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
W2PWJ9_PHYPN1.880e-1864.81Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:509884..510078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|144692|gw1.96.41.1
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
COG categoryDZ
Max annot lvl4776|Peronosporales
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota,3Q9I4@4776|Peronosporales
Evalue3.08e-19
Seed ortholog4792.ETI39824
Hectar predicted targeting categoryother localisation
TranscriptId145014
TrackFilteredModels1
ProteinId144692
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144692gene_13086Tribonema minus UTEX_B_3156 geneContig_96 509884..510078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13086_1exon_13086_1Tribonema minus UTEX_B_3156 exonContig_96 509884..510078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13086CDS_13086Tribonema minus UTEX_B_3156 CDSContig_96 509884..510078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144692Trimin1|144692|gw1.96.41.1Tribonema minus UTEX_B_3156 polypeptideContig_96 509884..510078 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13086 ID=mRNA_13086|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_96:509884..510078- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGCCGATGTGTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTT
CTTCTCCATCAACCTGCCCCGCTACTCCTGTGACAACGTCATGGCGGAGC
GGCTAAAATATGCCATGTACAACTGTATCGAAATGGATGCAGACTTTAGG
CTGGCGGACACAGAGACGACGGGATGGGGCAACGCGGAGGTCGTT
back to top

protein sequence of jgi.p|Trimin1|144692

>Trimin1|144692|gw1.96.41.1 ID=Trimin1|144692|gw1.96.41.1|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
DADVSVDQQLPRAHTCFFSINLPRYSCDNVMAERLKYAMYNCIEMDADFR
LADTETTGWGNAEVV
back to top

mRNA from alignment at Contig_96:509884..510078-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13086 ID=mRNA_13086|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=195bp|location=Sequence derived from alignment at Contig_96:509884..510078- (Tribonema minus UTEX_B_3156 )
GATGCCGATGTGTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTT
CTTCTCCATCAACCTGCCCCGCTACTCCTGTGACAACGTCATGGCGGAGC
GGCTAAAATATGCCATGTACAACTGTATCGAAATGGATGCAGACTTTAGG
CTGGCGGACACAGAGACGACGGGATGGGGCAACGCGGAGGTCGTT
back to top

Coding sequence (CDS) from alignment at Contig_96:509884..510078-

>mRNA_13086 ID=mRNA_13086|Name=jgi.p|Trimin1|144692|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_96:509884..510078- (Tribonema minus UTEX_B_3156 )
GATGCCGATGTGTCTGTCGATCAGCAGCTTCCTAGGGCACATACATGCTT
CTTCTCCATCAACCTGCCCCGCTACTCCTGTGACAACGTCATGGCGGAGC
GGCTAAAATATGCCATGTACAACTGTATCGAAATGGATGCAGACTTTAGG
CTGGCGGACACAGAGACGACGGGATGGGGCAACGCGGAGGTCGTT
back to top