mRNA_13047 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|100880
Unique NamemRNA_13047
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|100880 vs. uniprot
Match: A0A835YID1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YID1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 4.070e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:   40 MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG 357
            MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG
Sbjct:    1 MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|100880 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YID1_9STRA4.070e-70100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:140688..141176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|100880|CE100879_8
Hectar predicted targeting categoryother localisation
TranscriptId101202
TrackFilteredModels1
ProteinId100880
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|100880gene_13047Tribonema minus UTEX_B_3156 geneContig_96 140688..141176 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13047_1exon_13047_1Tribonema minus UTEX_B_3156 exonContig_96 140688..141176 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13047UTR5_13047Tribonema minus UTEX_B_3156 five_prime_UTRContig_96 140688..140726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13047CDS_13047Tribonema minus UTEX_B_3156 CDSContig_96 140727..141047 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13047UTR3_13047Tribonema minus UTEX_B_3156 three_prime_UTRContig_96 141048..141176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|100880Trimin1|100880|CE100879_8Tribonema minus UTEX_B_3156 polypeptideContig_96 140727..141047 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAACATCAGAATGGACGCTATTGCCCCTTCGTTGAACAATGACACACTG
CCACAAAGACGGCTCTTCCCAGGAATGCGAACATGTCCTAGGATCTGGCC
TGCTTAGCAGCAATCGCCGCGTTCTGCGCCCGATTCTTGTGTGCATAAGC
TTGCATGGACTCTACGCTGCCTACATAGGCTCCGCTCATGCCAACTACCC
ATTGATGGCACATGTGTACAGCTTGCGTGTCGCGCGCGCTGCCTCCTCAG
AGTTTGCAGTAACAGACTACGTCATCTGGACAGCCGTGGTGGTGCTCAAT
TGCAAATGCGCTAGCTTCATGCTCAATGTATGCAGCGACGGGGCGGGAGC
TATGGGCTGAACCGTTTCGGCCGCTGCGGCGCACGCCATTGTGCTGCTGC
GCCATGCCCTTGACACTTTTGCAGCCACGCCAGCATGATTTGAATCATCC
AGCGCAGGCCGAGTTTGGTGTCATAGGCGTTCGCTGTCG
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protein sequence of jgi.p|Trimin1|100880

>Trimin1|100880|CE100879_8 ID=Trimin1|100880|CE100879_8|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAH
ANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSD
GAGAMG*
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mRNA from alignment at Contig_96:140688..141176+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )
GCAACATCAGAATGGACGCTATTGCCCCTTCGTTGAACAATGACACACTG
CCACAAAGACGGCTCTTCCCAGGAATGCGAACATGTCCTAGGATCTGGCC
TGCTTAGCAGCAATCGCCGCGTTCTGCGCCCGATTCTTGTGTGCATAAGC
TTGCATGGACTCTACGCTGCCTACATAGGCTCCGCTCATGCCAACTACCC
ATTGATGGCACATGTGTACAGCTTGCGTGTCGCGCGCGCTGCCTCCTCAG
AGTTTGCAGTAACAGACTACGTCATCTGGACAGCCGTGGTGGTGCTCAAT
TGCAAATGCGCTAGCTTCATGCTCAATGTATGCAGCGACGGGGCGGGAGC
TATGGGCTGAACCGTTTCGGCCGCTGCGGCGCACGCCATTGTGCTGCTGC
GCCATGCCCTTGACACTTTTGCAGCCACGCCAGCATGATTTGAATCATCC
AGCGCAGGCCGAGTTTGGTGTCATAGGCGTTCGCTGTCG
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Coding sequence (CDS) from alignment at Contig_96:140688..141176+

>mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )
ATGACACACTGCCACAAAGACGGCTCTTCCCAGGAATGCGAACATGTCCT
AGGATCTGGCCTGCTTAGCAGCAATCGCCGCGTTCTGCGCCCGATTCTTG
TGTGCATAAGCTTGCATGGACTCTACGCTGCCTACATAGGCTCCGCTCAT
GCCAACTACCCATTGATGGCACATGTGTACAGCTTGCGTGTCGCGCGCGC
TGCCTCCTCAGAGTTTGCAGTAACAGACTACGTCATCTGGACAGCCGTGG
TGGTGCTCAATTGCAAATGCGCTAGCTTCATGCTCAATGTATGCAGCGAC
GGGGCGGGAGCTATGGGCTGA
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