mRNA_13047 (mRNA) Tribonema minus UTEX_B_3156
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of jgi.p|Trimin1|100880 vs. uniprot
Match: A0A835YID1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YID1_9STRA) HSP 1 Score: 216 bits (549), Expect = 4.070e-70 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 Query: 40 MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG 357
MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG
Sbjct: 1 MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG 106 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|100880 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCAACATCAGAATGGACGCTATTGCCCCTTCGTTGAACAATGACACACTGback to top protein sequence of jgi.p|Trimin1|100880 >Trimin1|100880|CE100879_8 ID=Trimin1|100880|CE100879_8|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHback to top mRNA from alignment at Contig_96:140688..141176+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:140688..141176+ >mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )back to top |