Homology
BLAST of jgi.p|Trimin1|100880 vs. uniprot
Match: A0A835YID1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YID1_9STRA) HSP 1 Score: 216 bits (549), Expect = 4.070e-70 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 Query: 40 MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG 357
MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG
Sbjct: 1 MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAHANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSDGAGAMG 106
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|100880|CE100879_8 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 101202 |
| Track | FilteredModels1 |
| ProteinId | 100880 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
GCAACATCAGAATGGACGCTATTGCCCCTTCGTTGAACAATGACACACTG
CCACAAAGACGGCTCTTCCCAGGAATGCGAACATGTCCTAGGATCTGGCC
TGCTTAGCAGCAATCGCCGCGTTCTGCGCCCGATTCTTGTGTGCATAAGC
TTGCATGGACTCTACGCTGCCTACATAGGCTCCGCTCATGCCAACTACCC
ATTGATGGCACATGTGTACAGCTTGCGTGTCGCGCGCGCTGCCTCCTCAG
AGTTTGCAGTAACAGACTACGTCATCTGGACAGCCGTGGTGGTGCTCAAT
TGCAAATGCGCTAGCTTCATGCTCAATGTATGCAGCGACGGGGCGGGAGC
TATGGGCTGAACCGTTTCGGCCGCTGCGGCGCACGCCATTGTGCTGCTGC
GCCATGCCCTTGACACTTTTGCAGCCACGCCAGCATGATTTGAATCATCC
AGCGCAGGCCGAGTTTGGTGTCATAGGCGTTCGCTGTCG back to topprotein sequence of jgi.p|Trimin1|100880 >Trimin1|100880|CE100879_8 ID=Trimin1|100880|CE100879_8|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MTHCHKDGSSQECEHVLGSGLLSSNRRVLRPILVCISLHGLYAAYIGSAH
ANYPLMAHVYSLRVARAASSEFAVTDYVIWTAVVVLNCKCASFMLNVCSD
GAGAMG* back to topmRNA from alignment at Contig_96:140688..141176+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )
GCAACATCAGAATGGACGCTATTGCCCCTTCGTTGAACAATGACACACTG
CCACAAAGACGGCTCTTCCCAGGAATGCGAACATGTCCTAGGATCTGGCC
TGCTTAGCAGCAATCGCCGCGTTCTGCGCCCGATTCTTGTGTGCATAAGC
TTGCATGGACTCTACGCTGCCTACATAGGCTCCGCTCATGCCAACTACCC
ATTGATGGCACATGTGTACAGCTTGCGTGTCGCGCGCGCTGCCTCCTCAG
AGTTTGCAGTAACAGACTACGTCATCTGGACAGCCGTGGTGGTGCTCAAT
TGCAAATGCGCTAGCTTCATGCTCAATGTATGCAGCGACGGGGCGGGAGC
TATGGGCTGAACCGTTTCGGCCGCTGCGGCGCACGCCATTGTGCTGCTGC
GCCATGCCCTTGACACTTTTGCAGCCACGCCAGCATGATTTGAATCATCC
AGCGCAGGCCGAGTTTGGTGTCATAGGCGTTCGCTGTCG back to topCoding sequence (CDS) from alignment at Contig_96:140688..141176+ >mRNA_13047 ID=mRNA_13047|Name=jgi.p|Trimin1|100880|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_96:140688..141176+ (Tribonema minus UTEX_B_3156 )
ATGACACACTGCCACAAAGACGGCTCTTCCCAGGAATGCGAACATGTCCT
AGGATCTGGCCTGCTTAGCAGCAATCGCCGCGTTCTGCGCCCGATTCTTG
TGTGCATAAGCTTGCATGGACTCTACGCTGCCTACATAGGCTCCGCTCAT
GCCAACTACCCATTGATGGCACATGTGTACAGCTTGCGTGTCGCGCGCGC
TGCCTCCTCAGAGTTTGCAGTAACAGACTACGTCATCTGGACAGCCGTGG
TGGTGCTCAATTGCAAATGCGCTAGCTTCATGCTCAATGTATGCAGCGAC
GGGGCGGGAGCTATGGGCTGA back to top
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