mRNA_10571 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350866
Unique NamemRNA_10571
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 717 bits (1851), Expect = 1.150e-260
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 1
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 1095
            MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT
Sbjct:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 365          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 326 bits (835), Expect = 2.420e-106
Identity = 178/330 (53.94%), Postives = 216/330 (65.45%), Query Frame = 1
Query:   91 YPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADP--AAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED--GEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFE 1068
            + +++   +R+   + + EELVFDLIG+D S+ANALRRIMLAEVPTMAIE VY+EMN+ +I DEVL+HRLGLVP+ VDPR F +                   +V  +E         ++  NTVVF L  +C R AD  P  +  PYT  VYS H +W+PQ  QAE FPDG+RP+H+DILLAKLR GQ I LE HC++GVGKDHAK+SPVATASYRL P I +A  V G  A +L A CPMNVFDIED  GE        A  ARPRDCTMCRECIR  GW ERV L R ++H+IF VE  G L  R IVKEA+R+LR K    L   +
Sbjct:   38 FSDRLLEGMRIEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRLGLVPIQVDPRLFKD-------------------KVPQDE---------INSKNTVVFGLDVQCSRSADTRPPGSTEPYTMSVYSKHLQWLPQADQAEEFPDGIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGGERR------ATAARPRDCTMCRECIRQEGWDERVKLYRAADHYIFKVEAVGMLAPRDIVKEAIRILREKCTDFLGELQ 333          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 2.250e-102
Identity = 185/371 (49.87%), Postives = 231/371 (62.26%), Query Frame = 1
Query:   16 FEMRGDAPHRVFSAAKPDPAERGL--RYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLH-RRCVRPADA-DP--------AAPPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
            + ++ DAP  VF AA     +  L   Y E+V + L +   +       ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM MN+SII DE+L+HRLGL+P+  +PR F  V                      EE  E+ E     E NT VF+L  +    PAD  DP        A P  T  V+SG  EW P G Q ERF    GLRP+HDDIL+AKLR GQEI  EMHCRKG+GKDHAK+SPVATASYRL P +TL + V G  A ELVA CP+NVFDIED       G  A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E  G LP + ++K++++VLR K   ++A  E  E
Sbjct:    8 YRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFV---------------------GEEGGEQDEPT---EFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFE 351          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 308 bits (788), Expect = 1.480e-99
Identity = 177/348 (50.86%), Postives = 218/348 (62.64%), Query Frame = 1
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR-PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 1041
            M K I  +  DAPH   + ++   A     + +  +++L++     T +E+VFDLIGID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F                             E +E E  DEN T+VF+L   C   P+D +  +      VYS H EW+PQG Q ERF   +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P IT    V GA A+ L   CPMNVFDIED          AV ARPR+CTMCRECIR PGW+++V + R S+HFIFSVE  G LP   ++ EA++VL AK
Sbjct:    1 MGKKIISVGLDAPHVPDTESESSHA-----FVDNFKKQLKVKIQSLTDDEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSF-------------------------PEHEEGEATDEN-TLVFKLDVTCTADPSDPNDISKATNASVYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIED--------LAAVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAK 308          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A6G0XIR3_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIR3_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.170e-97
Identity = 174/348 (50.00%), Postives = 214/348 (61.49%), Query Frame = 1
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR-PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 1041
            M+K I  +  DAPH   +  +   A     + +  +++ ++     T E++VFD+IGID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F     L                         +E E  DEN T+VF+L   C   P D D  +      +YS H EW+PQG Q ERF   +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I     V GA A+ L   CPMNVFDIED          AV ARPR+CTMCRECIR PGW+++V L R S+HFIFSVE  G LP   ++ EA++VL  K
Sbjct:    1 MTKKIIRIGTDAPHVPDTEIETSHA-----FVDNFKKQFKVKIQSLTEEDIVFDVIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEL-------------------------EEGEATDEN-TLVFKLDVTCTADPDDPDDISKATNSSIYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPVTGADAKTLQKTCPMNVFDIED--------MAAVAARPRNCTMCRECIRAPGWSDKVELGRVSDHFIFSVETVGMLPPEDLLPEALKVLMTK 308          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 9.170e-97
Identity = 175/374 (46.79%), Postives = 223/374 (59.63%), Query Frame = 1
Query:   16 FEMRGDAPHRVFSAAKPDPAERGL--RYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEG-------------VYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
            + ++ DAP  VF AA     +  L   Y E+V + L +   +       ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM MN+SII DE+L+HRLGL+P+  +PR F  V                      +E  E+ E      +     R+     +P      A PY +G             +  G  EW P G Q ERF    GLRP+HDDIL+AKLR GQEI  EMHCRKG+GKDHAK+SPVATASYRL P +TL Q V G  A ELVA CP+NVFDIED       G  A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E  G LP + ++K++++VLR K   ++A  E  E
Sbjct:    8 YRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFV---------------------GDEGGEQDEAT----DGVQHVRVQAGGEKPGGPGGHAGPYADGYELCGGAATDHERLQVGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFE 353          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A1V9ZSM6_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSM6_9STRA)

HSP 1 Score: 300 bits (768), Expect = 1.600e-96
Identity = 182/362 (50.28%), Postives = 217/362 (59.94%), Query Frame = 1
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDP-AERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPA--APPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
            MSK I  +  DAPH       PD   E   R+ E  ++  ++   + T E++VFD IGID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F                             E +E E  DEN T+VF+L   C    D DP   +      VYS H EWIPQG Q ERF + +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I     + G  A+ L   CPMNVFDIED          AVVARPRDCTMCRECIR PGW E+V L R S+HFIFSVE  G L    ++ EA++VL +K    L     ++
Sbjct:    1 MSKKIIRIGTDAPHM------PDTECEATERFLESFKKNFKIKIQQLTDEDIVFDAIGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSF-------------------------PEHEEAEATDEN-TLVFKLDVVCEADKD-DPEDISKATNASVYSRHLEWIPQGMQEERFGN-IRPVSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIEDSH--------AVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESLNSID 320          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: W4GC85_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GC85_9STRA)

HSP 1 Score: 296 bits (759), Expect = 3.880e-95
Identity = 175/351 (49.86%), Postives = 213/351 (60.68%), Query Frame = 1
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR----PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 1041
            M K I  +  DAPH   +  +   A     + +  ++  ++     + E++VFDL+GID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F                             E +E E  DEN T+VF+L   C      PAD   A       VYS H EW+PQG Q ERF   +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I+    V GA A+ L   CPMNVFDIED          AV ARPR+CTMCRECIR PGW+++V L R S+HFIFSVE  G L    ++ EA++VL AK
Sbjct:    1 MVKKIISVGLDAPHVPDTECESSHA-----FVDNFKKHFKVKIQSLSDEDIVFDLVGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSF-------------------------PEHEEGEATDEN-TLVFKLDVTCTADPNDPADISKAT---NASVYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEISFPAPVVGADAKTLQKTCPMNVFDIED--------LAAVAARPRNCTMCRECIRAPGWSDKVKLGRVSDHFIFSVETVGMLRPEDLLPEAIKVLVAK 308          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 295 bits (756), Expect = 1.470e-94
Identity = 179/353 (50.71%), Postives = 216/353 (61.19%), Query Frame = 1
Query:   31 DAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRC-VRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVA-ACPMNVFDIEDGEXXXXXGAV--AVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
            DAPH       P        Y E++++++++     + EE+VFDLIG+D SIANALRRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGLVPLNVDPR F                             + +E E  DEN T+VF+L   C   PA    AA      VYS   EW+PQG Q ERF   +RP+H+DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I LAQ V GA AR+LVA  C + VFDIED       G V  AVV   R C MCRECIR PGW E++ L R S+HFIFSVE  G +    ++ EA+ VL  K +  L  F + +
Sbjct:   15 DAPHMPDVDTVPSHG-----YVEQLKKQVKVKIQSLSEEEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF-------------------------PDNEEAEATDEN-TIVFKLDVTCRFDPAHPQDAAKALHTSVYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIED------LGGVDTAVVKDARSCNMCRECIREPGWDEKIKLGRVSDHFIFSVESVGMIKPEELLPEALNVLVDKCNLALESFNQAD 329          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 291 bits (745), Expect = 1.610e-92
Identity = 172/365 (47.12%), Postives = 224/365 (61.37%), Query Frame = 1
Query:   13 IFEMRGDAPHRVFSAAKPD-PAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPAD--ADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAV--AVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNL 1092
            +  +  DAPH+      PD  +E    + E+ +R++++     T +E+VFDLIG+D +IANALRRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGLVPL VDPR F                             + +E E  DEN T+VF+L   C    +   DP    ++  VYS   EW+PQG Q ERF   +RP+H+DIL+AKLR GQ IALE HCRKG+GKDHAK+SPVATASYRL P++   ++V GA A+ LV  C M +FDIED       G V  AVV   R CTMCR CIR PGW E++ L R+S+HFIFSVE  G + A  ++ EA+ VL  K +  L  F +V++   +
Sbjct:   40 VIRVGQDAPHQ------PDVESESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLKVDPREFQAF-------------------------PDNEEAEATDEN-TIVFKLDVTCKYDPEHPKDPTKAIHSS-VYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIED------IGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMMKAEELLPEALGVLAEKCNIALESFTQVDEDEEM 364          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8K2_9STRA1.150e-260100.00DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2RJI0_9STRA2.420e-10653.94Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FPF8_ECTSI2.250e-10249.87DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA1.480e-9950.86DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6G0XIR3_9STRA2.170e-9750.00DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE9.170e-9746.79DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A1V9ZSM6_9STRA1.600e-9650.28DNA-directed RNA polymerases I and III subunit RPA... [more]
W4GC85_9STRA3.880e-9549.86DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA1.470e-9450.71DNA-directed RNA polymerases I and III subunit RPA... [more]
H3GV90_PHYRM1.610e-9247.12DNA-directed RNA polymerases I and III subunit RPA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:511630..514674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350866|estExt_Genemark1.C_Ctg_740056
KEGG TC1.I.1
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03021,ko03041
KEGG rclassRC00055,RC00523,RC02795
KEGG ReactionR00435,R00441,R00442,R00443,R03661,R05578
KEGG ModuleM00121,M00181,M00182,M00359
KEGG Pathwayko00230,ko00240,ko00860,ko00970,ko01100,ko01110,ko01120,ko03020,ko04612,ko04623,ko05169,map00230,map00240,map00860,map00970,map01100,map01110,map01120,map03020,map04612,map04623,map05169
KEGG koko:K03027,ko:K08059,ko:K13196,ko:K14163,ko:K18715
EC6.1.1.15,6.1.1.17
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015074,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070893,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Preferred namePOLR1C
Descriptiontranscription by RNA polymerase I
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0202@1|root,KOG1521@2759|Eukaryota
Evalue2.7e-103
Seed ortholog2880.D7FPF8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-directed RNA polymerase, insert domain
Ec32 orthologEc-14_004750.1
TranscriptId351188
TrackFilteredModels1
ProteinId350866
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350866gene_10571Tribonema minus UTEX_B_3156 geneContig_74 511630..514674 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10571_3exon_10571_3Tribonema minus UTEX_B_3156 exonContig_74 511630..511954 -
exon_10571_2exon_10571_2Tribonema minus UTEX_B_3156 exonContig_74 511984..512341 -
exon_10571_1exon_10571_1Tribonema minus UTEX_B_3156 exonContig_74 514202..514674 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10571UTR3_10571Tribonema minus UTEX_B_3156 three_prime_UTRContig_74 511630..511687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10571CDS_10571Tribonema minus UTEX_B_3156 CDSContig_74 514202..514674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350866Trimin1|350866|estExt_Genemark1.C_Ctg_740056Tribonema minus UTEX_B_3156 polypeptideContig_74 511688..514674 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10571 ID=mRNA_10571|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1156bp|location=Sequence derived from alignment at Contig_74:511630..514674- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAGCACATATTCGAGATGCGGGGCGATGCCCCGCACAGAGTCTT
CTCCGCTGCAAAGCCGGACCCAGCAGAACGAGGCCTCAGATATCCAGAAA
AAGTGCGGCGGCGACTGAGGATGCACTGCTGTAAAGAGACTCCGGAGGAG
CTGGTGTTTGACCTCATCGGCATTGATGTTTCCATTGCCAACGCCTTGAG
ACGCATCATGCTGGCGGAGGTCCCCACCATGGCCATAGAGACCGTGTACA
TGGAGATGAACACCAGCATCATCTTCGACGAGGTGCTGTCGCACAGGCTG
GGCCTGGTGCCCCTAAACGTCGACCCCCGCACATTCAGCGAGGTGGAGAC
GCTGCGACAAAAGGTGCTGAAGGAATACACAACGCGGGATGGGCATAAGC
GGGTGCAGAACGAGGAGGATGCTGAGGAGCAGGAGACGGAGCTGCTGGAC
GAGAACAACACAGTCGTTTTCAGACTCCACCGCCGCTGCGTGCGCCCCGC
GGACGCGGACCCTGCCGCCCCCCCGTACACGGAGGGCGTGTACTCCGGTC
ACTTTGAGTGGATACCGCAGGGGACGCAGGCGGAGCGCTTCCCCGACGGC
CTGCGCCCGCTGCACGACGACATTCTGCTCGCCAAGCTGCGCGCGGGCCA
GGAGATCGCGCTCGAGATGCACTGCCGCAAGGGCGTCGGCAAGGACCACG
CCAAGTACTCGCCGGTGGCGACGGCGTCGTACCGCCTCGCGCCGCGCATC
ACGCTGGCGCAGCGCGTCGCCGGCGCCGCCGCGCGCGAGCTCGTCGCCGC
GTGCCCCATGAACGTCTTCGACATCGAGGACGGCGAGGGGGAGGGGGAGG
GGGGCGCCGTCGCCGTCGTCGCGCGCCCGCGCGACTGCACCATGTGCCGC
GAGTGCATACGGCCGCCGGGGTGGGCGGAGCGCGTCACGCTCGCGCGCGA
GAGCAACCACTTCATCTTCAGCGTGGAGCCGTGCGGCGCGCTGCCGGCGC
GCGTCATCGTTAAGGAGGCGGTGCGCGTGCTGCGCGCCAAGGCGCACGGC
CTGCTCGCGTACTTTGAGGAGGTGGAGAAGAAGCGCAACCTGACGTGACG
CGGCGGCGCGCCGCTGCAGCAGCACAAAACGTAATGGACCGCCCCCACTG
CGCCCA
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protein sequence of jgi.p|Trimin1|350866

>Trimin1|350866|estExt_Genemark1.C_Ctg_740056 ID=Trimin1|350866|estExt_Genemark1.C_Ctg_740056|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=366bp
MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEE
LVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRL
GLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLD
ENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDG
LRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRI
TLAQRVAGAAARELVAACPMNVFDIEDGEGEGEGGAVAVVARPRDCTMCR
ECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHG
LLAYFEEVEKKRNLT*
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mRNA from alignment at Contig_74:511630..514674-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10571 ID=mRNA_10571|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3045bp|location=Sequence derived from alignment at Contig_74:511630..514674- (Tribonema minus UTEX_B_3156 )
ATGAGCAAGCACATATTCGAGATGCGGGGCGATGCCCCGCACAGAGTCTT CTCCGCTGCAAAGCCGGACCCAGCAGAACGAGGCCTCAGATATCCAGAAA AAGTGCGGCGGCGACTGAGGATGCACTGCTGTAAAGAGACTCCGGAGGAG CTGGTGTTTGACCTCATCGGCATTGATGTTTCCATTGCCAACGCCTTGAG ACGCATCATGCTGGCGGAGGTCCCCACCATGGCCATAGAGACCGTGTACA TGGAGATGAACACCAGCATCATCTTCGACGAGGTGCTGTCGCACAGGCTG GGCCTGGTGCCCCTAAACGTCGACCCCCGCACATTCAGCGAGGTGGAGAC GCTGCGACAAAAGGTGCTGAAGGAATACACAACGCGGGATGGGCATAAGC GGGTGCAGAACGAGGAGGATGCTGAGGAGCAGGAGACGGAGCTGCTGGAC GAGAACAACACAGTCGTTTTCAGGTGAACACCGATGATGGGTACCACAGT TTGTTTGCAGAACCGCTCGTATGACGAGCAAAACATTCACTCAGTCTCAT GTGCTTCGAATTCGAGGCGCATCTTACCCGGTCGCCCAGGACGTGTCTGA GCTTTGCTGATGCATTTCCCTGATCGGACCTGGAGGGGACATCCTCAGGT GCTGCAGTCGGATGAGGTCATGGCATGGGCTCACTATTGTCGCAGACCAC ACTGCAACATCCAAGAAGGTTGATGTCAATTGGTATCAGGCCATTGTTTG CGGGACAGCTCGGATCCAGAGCTCAGCCACTGCTCCCCGAGGAACGCTGG GTAAACGACGTCACCGTCTCAGGTGTTGCGGGGCCTGTCATAAATTGCGC ATGGTTTACCGTCAATAAGCTGTTGACCTTGTGAGGGGGTTGAGGCTTGC ACAGGAATGAGCATGGCAATTGTGTGCCTGCCCCTGCCCATGCTTGGGTC ACCTGCATGCCCTAGCTTGCCCAGCAAAACTTTTTACGACAGAACTTGCT CCTCAAAACTTGGGCCGCAGTACACAGCATATGAGTTTCTGGTCGAGTGA ATGTGTGCGAGTGGCAAAGAGGCAGAAGTGCCAGCATTAGCCGCTATTGC AGCTGTAGAGCATGCTGAGTCTGCGCCAGCGGCTGTGGAGAAGCTGCTTC CGCTCAGCTGCGTCACAAGGCTGCTGGTGTGGACCAGCATCTAACACTGC AATACCAGGTCTCGCTCGCTGTTGCTTACCTTCATTGCCATGAGTAGCTG GCGCTGCATTTGCTGCACGCAAACCTGCCTGCAATGCAGCTGTAGGCCTG AGCTGCGGGGCTGACTGGGCAAGGACGTTGCCTGCAACGCATAAGTGCGG AACGCTTGTGCTCAGGAGCTCCATTGACCACCCAGATGCCTAGGGCCCTG AACGTTGGTGTTGGTATTGTCTGGTGGTGCAACGAGCCCGGTGACCATGC AGGTGTTGCTTGATTGTGGCATGAGGTATACAAGGTGTGCAGCCACAATG GCTACCCTGTAGTGTATTTGATTATGATCTTGTGCGATTACATCAAGACG TCACATCTGATGTGAGGAGCGCACGCTGCGATTCAACATCTGACGTGCAC GTTGGGATTGCATTAGACGGCTGAACTTACTTGTGCGCGTTTTCCCGCGG GGACATGGGTACACGAAGCAGTGATGAAGCATGCGCATTATGATGGTGCT CGGTGTGGCAGTGTGGTGCGGTGGTGCTGCGCTACGCTGTGTCTGCCGTT CGTCAAGGCGCTCGGAGCTGCAGCGTAGAGCTCCAGCGTCTGGAGGCTGC AGCAGGTCCGCGCGCGGAGCGGTGACTGGGCATCGGTCCTCAGCACACCT GCAGCCGAAATGGGGTGCTGGCCCCGAGCGACACCAATGCCTCAGTGTGA CGGACTTACCACAATGAGCTTGATGGAGTGCATATGATGAAGCCAAGCAC CTCTTCCGTACAGTTGAGGGAGCGGCTGCGACATTATTGTAAAACGCATG CGAGTGTGTATTGCGCCACACCCTTCAACTTCAAATTCAAGTATATAGTG CCCCCACCCCTCCCCCCCGTCATCTGCGTTGGAGCGCACTGCGCAGTTCA GTCACAAGACTACTGTCCCACGTAGGCCCCTAGTTTTGAGCTGTAATGGC AGCATATCAGCGCTGTTGATAAGCCCAGCACAGTTGCAGCGCACAACGCT ACACTCCCGCACTTGCGCCGCCGCCCAAACCCTAAACCCCATCCGCACCG CTGACTCTACCCCCAACCCTCACCCTGACTGTGACCCTACTGTAACTCCA ACTTTAACCCGAACCCCCTTGCTCGCGCCCCAGACTCCACCGCCGCTGCG TGCGCCCCGCGGACGCGGACCCTGCCGCCCCCCCGTACACGGAGGGCGTG TACTCCGGTCACTTTGAGTGGATACCGCAGGGGACGCAGGCGGAGCGCTT CCCCGACGGCCTGCGCCCGCTGCACGACGACATTCTGCTCGCCAAGCTGC GCGCGGGCCAGGAGATCGCGCTCGAGATGCACTGCCGCAAGGGCGTCGGC AAGGACCACGCCAAGTACTCGCCGGTGGCGACGGCGTCGTACCGCCTCGC GCCGCGCATCACGCTGGCGCAGCGCGTCGCCGGCGCCGCCGCGCGCGAGC TCGTCGCCGCGTGCCCCATGAACGTCTTCGACATCGAGGACGTGGGGGGG GGCGGGGGGGGGACAGCGAGGGCGAGGGGGAGGGGGAGGGGGGCGCCGTC GCCGTCGTCGCGCGCCCGCGCGACTGCACCATGTGCCGCGAGTGCATACG GCCGCCGGGGTGGGCGGAGCGCGTCACGCTCGCGCGCGAGAGCAACCACT TCATCTTCAGCGTGGAGCCGTGCGGCGCGCTGCCGGCGCGCGTCATCGTT AAGGAGGCGGTGCGCGTGCTGCGCGCCAAGGCGCACGGCCTGCTCGCGTA CTTTGAGGAGGTGGAGAAGAAGCGCAACCTGACGTGACGCGGCGGCGCGC CGCTGCAGCAGCACAAAACGTAATGGACCGCCCCCACTGCGCCCA
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Coding sequence (CDS) from alignment at Contig_74:511630..514674-

>mRNA_10571 ID=mRNA_10571|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1098bp|location=Sequence derived from alignment at Contig_74:511630..514674- (Tribonema minus UTEX_B_3156 )
ATGAGCAAGCACATATTCGAGATGCGGGGCGATGCCCCGCACAGAGTCTT
CTCCGCTGCAAAGCCGGACCCAGCAGAACGAGGCCTCAGATATCCAGAAA
AAGTGCGGCGGCGACTGAGGATGCACTGCTGTAAAGAGACTCCGGAGGAG
CTGGTGTTTGACCTCATCGGCATTGATGTTTCCATTGCCAACGCCTTGAG
ACGCATCATGCTGGCGGAGGTCCCCACCATGGCCATAGAGACCGTGTACA
TGGAGATGAACACCAGCATCATCTTCGACGAGGTGCTGTCGCACAGGCTG
GGCCTGGTGCCCCTAAACGTCGACCCCCGCACATTCAGCGAGGTGGAGAC
GCTGCGACAAAAGGTGCTGAAGGAATACACAACGCGGGATGGGCATAAGC
GGGTGCAGAACGAGGAGGATGCTGAGGAGCAGGAGACGGAGCTGCTGGAC
GAGAACAACACAGTCGTTTTCAGACTCCACCGCCGCTGCGTGCGCCCCGC
GGACGCGGACCCTGCCGCCCCCCCGTACACGGAGGGCGTGTACTCCGGTC
ACTTTGAGTGGATACCGCAGGGGACGCAGGCGGAGCGCTTCCCCGACGGC
CTGCGCCCGCTGCACGACGACATTCTGCTCGCCAAGCTGCGCGCGGGCCA
GGAGATCGCGCTCGAGATGCACTGCCGCAAGGGCGTCGGCAAGGACCACG
CCAAGTACTCGCCGGTGGCGACGGCGTCGTACCGCCTCGCGCCGCGCATC
ACGCTGGCGCAGCGCGTCGCCGGCGCCGCCGCGCGCGAGCTCGTCGCCGC
GTGCCCCATGAACGTCTTCGACATCGAGGACGGCGAGGGGGAGGGGGAGG
GGGGCGCCGTCGCCGTCGTCGCGCGCCCGCGCGACTGCACCATGTGCCGC
GAGTGCATACGGCCGCCGGGGTGGGCGGAGCGCGTCACGCTCGCGCGCGA
GAGCAACCACTTCATCTTCAGCGTGGAGCCGTGCGGCGCGCTGCCGGCGC
GCGTCATCGTTAAGGAGGCGGTGCGCGTGCTGCGCGCCAAGGCGCACGGC
CTGCTCGCGTACTTTGAGGAGGTGGAGAAGAAGCGCAACCTGACGTGA
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