Trimin1|350866|estExt_Genemark1.C_Ctg_740056 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350866
Unique NameTrimin1|350866|estExt_Genemark1.C_Ctg_740056
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length366
Homology
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 717 bits (1850), Expect = 7.610e-261
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 365
            MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT
Sbjct:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 365          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.240e-106
Identity = 178/326 (54.60%), Postives = 215/326 (65.95%), Query Frame = 0
Query:   31 YPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADP--AAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED--GEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLL 352
            + +++   +R+   + + EELVFDLIG+D S+ANALRRIMLAEVPTMAIE VY+EMN+ +I DEVL+HRLGLVP+ VDPR F +                   +V  +E         ++  NTVVF L  +C R AD  P  +  PYT  VYS H +W+PQ  QAE FPDG+RP+H+DILLAKLR GQ I LE HC++GVGKDHAK+SPVATASYRL P I +A  V G  A +L A CPMNVFDIED  GE        A  ARPRDCTMCRECIR  GW ERV L R ++H+IF VE  G L  R IVKEA+R+LR K    L
Sbjct:   38 FSDRLLEGMRIEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRLGLVPIQVDPRLFKD-------------------KVPQDE---------INSKNTVVFGLDVQCSRSADTRPPGSTEPYTMSVYSKHLQWLPQADQAEEFPDGIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGGERR------ATAARPRDCTMCRECIRQEGWDERVKLYRAADHYIFKVEAVGMLAPRDIVKEAIRILREKCTDFL 329          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 1.650e-102
Identity = 185/371 (49.87%), Postives = 231/371 (62.26%), Query Frame = 0
Query:    6 FEMRGDAPHRVFSAAKPDPAERGL--RYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLH-RRCVRPADA-DP--------AAPPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 359
            + ++ DAP  VF AA     +  L   Y E+V + L +   +       ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM MN+SII DE+L+HRLGL+P+  +PR F  V                      EE  E+ E     E NT VF+L  +    PAD  DP        A P  T  V+SG  EW P G Q ERF    GLRP+HDDIL+AKLR GQEI  EMHCRKG+GKDHAK+SPVATASYRL P +TL + V G  A ELVA CP+NVFDIED       G  A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E  G LP + ++K++++VLR K   ++A  E  E
Sbjct:    8 YRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFV---------------------GEEGGEQDEPT---EFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFE 351          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 308 bits (788), Expect = 7.700e-100
Identity = 177/348 (50.86%), Postives = 218/348 (62.64%), Query Frame = 0
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR-PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 347
            M K I  +  DAPH   + ++   A     + +  +++L++     T +E+VFDLIGID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F                             E +E E  DEN T+VF+L   C   P+D +  +      VYS H EW+PQG Q ERF   +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P IT    V GA A+ L   CPMNVFDIED          AV ARPR+CTMCRECIR PGW+++V + R S+HFIFSVE  G LP   ++ EA++VL AK
Sbjct:    1 MGKKIISVGLDAPHVPDTESESSHA-----FVDNFKKQLKVKIQSLTDDEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSF-------------------------PEHEEGEATDEN-TLVFKLDVTCTADPSDPNDISKATNASVYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIED--------LAAVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAK 308          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A6G0XIR3_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIR3_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.130e-97
Identity = 174/348 (50.00%), Postives = 214/348 (61.49%), Query Frame = 0
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR-PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 347
            M+K I  +  DAPH   +  +   A     + +  +++ ++     T E++VFD+IGID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F     L                         +E E  DEN T+VF+L   C   P D D  +      +YS H EW+PQG Q ERF   +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I     V GA A+ L   CPMNVFDIED          AV ARPR+CTMCRECIR PGW+++V L R S+HFIFSVE  G LP   ++ EA++VL  K
Sbjct:    1 MTKKIIRIGTDAPHVPDTEIETSHA-----FVDNFKKQFKVKIQSLTEEDIVFDVIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEL-------------------------EEGEATDEN-TLVFKLDVTCTADPDDPDDISKATNSSIYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPVTGADAKTLQKTCPMNVFDIED--------MAAVAARPRNCTMCRECIRAPGWSDKVELGRVSDHFIFSVETVGMLPPEDLLPEALKVLMTK 308          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 6.780e-97
Identity = 175/374 (46.79%), Postives = 223/374 (59.63%), Query Frame = 0
Query:    6 FEMRGDAPHRVFSAAKPDPAERGL--RYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEG-------------VYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 359
            + ++ DAP  VF AA     +  L   Y E+V + L +   +       ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM MN+SII DE+L+HRLGL+P+  +PR F  V                      +E  E+ E      +     R+     +P      A PY +G             +  G  EW P G Q ERF    GLRP+HDDIL+AKLR GQEI  EMHCRKG+GKDHAK+SPVATASYRL P +TL Q V G  A ELVA CP+NVFDIED       G  A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E  G LP + ++K++++VLR K   ++A  E  E
Sbjct:    8 YRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFV---------------------GDEGGEQDEAT----DGVQHVRVQAGGEKPGGPGGHAGPYADGYELCGGAATDHERLQVGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFE 353          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A1V9ZSM6_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSM6_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.180e-96
Identity = 182/362 (50.28%), Postives = 217/362 (59.94%), Query Frame = 0
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDP-AERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPA--APPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 359
            MSK I  +  DAPH       PD   E   R+ E  ++  ++   + T E++VFD IGID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F                             E +E E  DEN T+VF+L   C    D DP   +      VYS H EWIPQG Q ERF + +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I     + G  A+ L   CPMNVFDIED          AVVARPRDCTMCRECIR PGW E+V L R S+HFIFSVE  G L    ++ EA++VL +K    L     ++
Sbjct:    1 MSKKIIRIGTDAPHM------PDTECEATERFLESFKKNFKIKIQQLTDEDIVFDAIGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSF-------------------------PEHEEAEATDEN-TLVFKLDVVCEADKD-DPEDISKATNASVYSRHLEWIPQGMQEERFGN-IRPVSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIEDSH--------AVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESLNSID 320          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: W4GC85_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GC85_9STRA)

HSP 1 Score: 296 bits (759), Expect = 2.030e-95
Identity = 175/351 (49.86%), Postives = 213/351 (60.68%), Query Frame = 0
Query:    1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR----PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 347
            M K I  +  DAPH   +  +   A     + +  ++  ++     + E++VFDL+GID SIANA RRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGL+PL VDPR F                             E +E E  DEN T+VF+L   C      PAD   A       VYS H EW+PQG Q ERF   +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I+    V GA A+ L   CPMNVFDIED          AV ARPR+CTMCRECIR PGW+++V L R S+HFIFSVE  G L    ++ EA++VL AK
Sbjct:    1 MVKKIISVGLDAPHVPDTECESSHA-----FVDNFKKHFKVKIQSLSDEDIVFDLVGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSF-------------------------PEHEEGEATDEN-TLVFKLDVTCTADPNDPADISKAT---NASVYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEISFPAPVVGADAKTLQKTCPMNVFDIED--------LAAVAARPRNCTMCRECIRAPGWSDKVKLGRVSDHFIFSVETVGMLRPEDLLPEAIKVLVAK 308          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA)

HSP 1 Score: 295 bits (755), Expect = 1.090e-94
Identity = 179/353 (50.71%), Postives = 216/353 (61.19%), Query Frame = 0
Query:   11 DAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRC-VRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVA-ACPMNVFDIEDGEXXXXXGAV--AVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 359
            DAPH       P        Y E++++++++     + EE+VFDLIG+D SIANALRRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGLVPLNVDPR F                             + +E E  DEN T+VF+L   C   PA    AA      VYS   EW+PQG Q ERF   +RP+H+DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I LAQ V GA AR+LVA  C + VFDIED       G V  AVV   R C MCRECIR PGW E++ L R S+HFIFSVE  G +    ++ EA+ VL  K +  L  F + +
Sbjct:   15 DAPHMPDVDTVPSHG-----YVEQLKKQVKVKIQSLSEEEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF-------------------------PDNEEAEATDEN-TIVFKLDVTCRFDPAHPQDAAKALHTSVYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIED------LGGVDTAVVKDARSCNMCRECIREPGWDEKIKLGRVSDHFIFSVESVGMIKPEELLPEALNVLVDKCNLALESFNQAD 329          
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM)

HSP 1 Score: 291 bits (744), Expect = 1.200e-92
Identity = 172/366 (46.99%), Postives = 224/366 (61.20%), Query Frame = 0
Query:    5 IFEMRGDAPHRVFSAAKPD-PAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPAD--ADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAV--AVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 365
            +  +  DAPH+      PD  +E    + E+ +R++++     T +E+VFDLIG+D +IANALRRI+LAEVPTMAIE VY+  N+SII DEVL+HRLGLVPL VDPR F                             + +E E  DEN T+VF+L   C    +   DP    ++  VYS   EW+PQG Q ERF   +RP+H+DIL+AKLR GQ IALE HCRKG+GKDHAK+SPVATASYRL P++   ++V GA A+ LV  C M +FDIED       G V  AVV   R CTMCR CIR PGW E++ L R+S+HFIFSVE  G + A  ++ EA+ VL  K +  L  F +V++   + 
Sbjct:   40 VIRVGQDAPHQ------PDVESESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLKVDPREFQAF-------------------------PDNEEAEATDEN-TIVFKLDVTCKYDPEHPKDPTKAIHSS-VYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIED------IGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMMKAEELLPEALGVLAEKCNIALESFTQVDEDEEMA 365          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8K2_9STRA7.610e-261100.00DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2RJI0_9STRA1.240e-10654.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FPF8_ECTSI1.650e-10249.87DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA7.700e-10050.86DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6G0XIR3_9STRA1.130e-9750.00DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE6.780e-9746.79DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A1V9ZSM6_9STRA1.180e-9650.28DNA-directed RNA polymerases I and III subunit RPA... [more]
W4GC85_9STRA2.030e-9549.86DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A5D6XHD4_9STRA1.090e-9450.71DNA-directed RNA polymerases I and III subunit RPA... [more]
H3GV90_PHYRM1.200e-9246.99DNA-directed RNA polymerases I and III subunit RPA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 132..152
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 33..356
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 50..354
e-value: 1.3E-85
score: 300.3
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 53..347
e-value: 9.8E-22
score: 77.2
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 76..234
e-value: 1.5E-99
score: 334.9
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 75..238
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 82..237
e-value: 1.7E-23
score: 83.2
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 45..347
e-value: 1.5E-99
score: 334.9
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 39..358
IPR033901DNA-directed RNA polymerases I and III subunit AC40PANTHERPTHR11800:SF13DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1coord: 33..356
IPR033901DNA-directed RNA polymerases I and III subunit AC40CDDcd07032RNAP_I_II_AC40coord: 45..352
e-value: 6.41474E-131
score: 374.623
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved sitePROSITEPS00446RNA_POL_D_30KDcoord: 64..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_74contigContig_74:511688..514674 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350866mRNA_10571Tribonema minus UTEX_B_3156 mRNAContig_74 511630..514674 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350866|estExt_Genemark1.C_Ctg_740056 ID=Trimin1|350866|estExt_Genemark1.C_Ctg_740056|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=366bp
MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEE
LVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRL
GLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLD
ENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDG
LRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRI
TLAQRVAGAAARELVAACPMNVFDIEDGEGEGEGGAVAVVARPRDCTMCR
ECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHG
LLAYFEEVEKKRNLT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR036643RNApol_insert_sf
IPR011262DNA-dir_RNA_pol_insert
IPR036603RBP11-like
IPR033901RNAPI/III_AC40
IPR001514DNA-dir_RNA_pol_30-40kDasu_CS