mRNA_10571 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA) HSP 1 Score: 717 bits (1851), Expect = 1.150e-260 Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 1
Query: 1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 1095
MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT
Sbjct: 1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNLT 365
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA) HSP 1 Score: 326 bits (835), Expect = 2.420e-106 Identity = 178/330 (53.94%), Postives = 216/330 (65.45%), Query Frame = 1
Query: 91 YPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADP--AAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIED--GEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFE 1068
+ +++ +R+ + + EELVFDLIG+D S+ANALRRIMLAEVPTMAIE VY+EMN+ +I DEVL+HRLGLVP+ VDPR F + +V +E ++ NTVVF L +C R AD P + PYT VYS H +W+PQ QAE FPDG+RP+H+DILLAKLR GQ I LE HC++GVGKDHAK+SPVATASYRL P I +A V G A +L A CPMNVFDIED GE A ARPRDCTMCRECIR GW ERV L R ++H+IF VE G L R IVKEA+R+LR K L +
Sbjct: 38 FSDRLLEGMRIEVMESSEEELVFDLIGVDASVANALRRIMLAEVPTMAIEYVYIEMNSGMIHDEVLAHRLGLVPIQVDPRLFKD-------------------KVPQDE---------INSKNTVVFGLDVQCSRSADTRPPGSTEPYTMSVYSKHLQWLPQADQAEEFPDGIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGGERR------ATAARPRDCTMCRECIRQEGWDERVKLYRAADHYIFKVEAVGMLAPRDIVKEAIRILREKCTDFLGELQ 333
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI) HSP 1 Score: 316 bits (809), Expect = 2.250e-102 Identity = 185/371 (49.87%), Postives = 231/371 (62.26%), Query Frame = 1
Query: 16 FEMRGDAPHRVFSAAKPDPAERGL--RYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLH-RRCVRPADA-DP--------AAPPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
+ ++ DAP VF AA + L Y E+V + L + + ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM MN+SII DE+L+HRLGL+P+ +PR F V EE E+ E E NT VF+L + PAD DP A P T V+SG EW P G Q ERF GLRP+HDDIL+AKLR GQEI EMHCRKG+GKDHAK+SPVATASYRL P +TL + V G A ELVA CP+NVFDIED G A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E G LP + ++K++++VLR K ++A E E
Sbjct: 8 YRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVQSGGGHTNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFV---------------------GEEGGEQDEPT---EFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFE 351
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA) HSP 1 Score: 308 bits (788), Expect = 1.480e-99 Identity = 177/348 (50.86%), Postives = 218/348 (62.64%), Query Frame = 1
Query: 1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR-PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 1041
M K I + DAPH + ++ A + + +++L++ T +E+VFDLIGID SIANA RRI+LAEVPTMAIE VY+ N+SII DEVL+HRLGL+PL VDPR F E +E E DEN T+VF+L C P+D + + VYS H EW+PQG Q ERF +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P IT V GA A+ L CPMNVFDIED AV ARPR+CTMCRECIR PGW+++V + R S+HFIFSVE G LP ++ EA++VL AK
Sbjct: 1 MGKKIISVGLDAPHVPDTESESSHA-----FVDNFKKQLKVKIQSLTDDEIVFDLIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSF-------------------------PEHEEGEATDEN-TLVFKLDVTCTADPSDPNDISKATNASVYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIED--------LAAVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAK 308
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A6G0XIR3_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIR3_9STRA) HSP 1 Score: 302 bits (773), Expect = 2.170e-97 Identity = 174/348 (50.00%), Postives = 214/348 (61.49%), Query Frame = 1
Query: 1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR-PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 1041
M+K I + DAPH + + A + + +++ ++ T E++VFD+IGID SIANA RRI+LAEVPTMAIE VY+ N+SII DEVL+HRLGL+PL VDPR F L +E E DEN T+VF+L C P D D + +YS H EW+PQG Q ERF +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I V GA A+ L CPMNVFDIED AV ARPR+CTMCRECIR PGW+++V L R S+HFIFSVE G LP ++ EA++VL K
Sbjct: 1 MTKKIIRIGTDAPHVPDTEIETSHA-----FVDNFKKQFKVKIQSLTEEDIVFDVIGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSFPEL-------------------------EEGEATDEN-TLVFKLDVTCTADPDDPDDISKATNSSIYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPVTGADAKTLQKTCPMNVFDIED--------MAAVAARPRNCTMCRECIRAPGWSDKVELGRVSDHFIFSVETVGMLPPEDLLPEALKVLMTK 308
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE) HSP 1 Score: 301 bits (772), Expect = 9.170e-97 Identity = 175/374 (46.79%), Postives = 223/374 (59.63%), Query Frame = 1
Query: 16 FEMRGDAPHRVFSAAKPDPAERGL--RYPEKVRRRLRMHCCKET---PEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPAAPPYTEG-------------VYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
+ ++ DAP VF AA + L Y E+V + L + + ELVFDL+G+D SIANALRRI+LAEV T+AIE VYM MN+SII DE+L+HRLGL+P+ +PR F V +E E+ E + R+ +P A PY +G + G EW P G Q ERF GLRP+HDDIL+AKLR GQEI EMHCRKG+GKDHAK+SPVATASYRL P +TL Q V G A ELVA CP+NVFDIED G A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E G LP + ++K++++VLR K ++A E E
Sbjct: 8 YRVKNDAPSEVFEAASEQERKDRLLLSYAERVEKTLDVKAVRSGGGHKNELVFDLVGVDASIANALRRILLAEVATVAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFV---------------------GDEGGEQDEAT----DGVQHVRVQAGGEKPGGPGGHAGPYADGYELCGGAATDHERLQVGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFE 353
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A1V9ZSM6_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSM6_9STRA) HSP 1 Score: 300 bits (768), Expect = 1.600e-96 Identity = 182/362 (50.28%), Postives = 217/362 (59.94%), Query Frame = 1
Query: 1 MSKHIFEMRGDAPHRVFSAAKPDP-AERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPADADPA--APPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
MSK I + DAPH PD E R+ E ++ ++ + T E++VFD IGID SIANA RRI+LAEVPTMAIE VY+ N+SII DEVL+HRLGL+PL VDPR F E +E E DEN T+VF+L C D DP + VYS H EWIPQG Q ERF + +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I + G A+ L CPMNVFDIED AVVARPRDCTMCRECIR PGW E+V L R S+HFIFSVE G L ++ EA++VL +K L ++
Sbjct: 1 MSKKIIRIGTDAPHM------PDTECEATERFLESFKKNFKIKIQQLTDEDIVFDAIGIDASIANAFRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLIPLQVDPRDFQSF-------------------------PEHEEAEATDEN-TLVFKLDVVCEADKD-DPEDISKATNASVYSRHLEWIPQGMQEERFGN-IRPVSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIEDSH--------AVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESLNSID 320
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: W4GC85_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GC85_9STRA) HSP 1 Score: 296 bits (759), Expect = 3.880e-95 Identity = 175/351 (49.86%), Postives = 213/351 (60.68%), Query Frame = 1
Query: 1 MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVR----PADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAK 1041
M K I + DAPH + + A + + ++ ++ + E++VFDL+GID SIANA RRI+LAEVPTMAIE VY+ N+SII DEVL+HRLGL+PL VDPR F E +E E DEN T+VF+L C PAD A VYS H EW+PQG Q ERF +RP+ +DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I+ V GA A+ L CPMNVFDIED AV ARPR+CTMCRECIR PGW+++V L R S+HFIFSVE G L ++ EA++VL AK
Sbjct: 1 MVKKIISVGLDAPHVPDTECESSHA-----FVDNFKKHFKVKIQSLSDEDIVFDLVGIDASIANAFRRILLAEVPTMAIEHVYLWNNSSIIQDEVLAHRLGLIPLQVDPREFQSF-------------------------PEHEEGEATDEN-TLVFKLDVTCTADPNDPADISKAT---NASVYSRHLEWVPQGLQEERF-GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEISFPAPVVGADAKTLQKTCPMNVFDIED--------LAAVAARPRNCTMCRECIRAPGWSDKVKLGRVSDHFIFSVETVGMLRPEDLLPEAIKVLVAK 308
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: A0A5D6XHD4_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHD4_9STRA) HSP 1 Score: 295 bits (756), Expect = 1.470e-94 Identity = 179/353 (50.71%), Postives = 216/353 (61.19%), Query Frame = 1
Query: 31 DAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRC-VRPADADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVA-ACPMNVFDIEDGEXXXXXGAV--AVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 1077
DAPH P Y E++++++++ + EE+VFDLIG+D SIANALRRI+LAEVPTMAIE VY+ N+SII DEVL+HRLGLVPLNVDPR F + +E E DEN T+VF+L C PA AA VYS EW+PQG Q ERF +RP+H+DIL+AKLR GQ IALE HCRKGVGKDHAK+SPVATASYRL P I LAQ V GA AR+LVA C + VFDIED G V AVV R C MCRECIR PGW E++ L R S+HFIFSVE G + ++ EA+ VL K + L F + +
Sbjct: 15 DAPHMPDVDTVPSHG-----YVEQLKKQVKVKIQSLSEEEIVFDLIGVDASIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDPREFQAF-------------------------PDNEEAEATDEN-TIVFKLDVTCRFDPAHPQDAAKALHTSVYSRDLEWVPQGNQEERF-GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHIELAQPVTGADARQLVADKCALGVFDIED------LGGVDTAVVKDARSCNMCRECIREPGWDEKIKLGRVSDHFIFSVESVGMIKPEELLPEALNVLVDKCNLALESFNQAD 329
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Match: H3GV90_PHYRM (DNA-directed RNA polymerases I and III subunit RPAC1 n=20 Tax=Phytophthora TaxID=4783 RepID=H3GV90_PHYRM) HSP 1 Score: 291 bits (745), Expect = 1.610e-92 Identity = 172/365 (47.12%), Postives = 224/365 (61.37%), Query Frame = 1
Query: 13 IFEMRGDAPHRVFSAAKPD-PAERGLRYPEKVRRRLRMHCCKETPEELVFDLIGIDVSIANALRRIMLAEVPTMAIETVYMEMNTSIIFDEVLSHRLGLVPLNVDPRTFSEVETLRQKVLKEYTTRDGHKRVQNEEDAEEQETELLDENNTVVFRLHRRCVRPAD--ADPAAPPYTEGVYSGHFEWIPQGTQAERFPDGLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAV--AVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVEKKRNL 1092
+ + DAPH+ PD +E + E+ +R++++ T +E+VFDLIG+D +IANALRRI+LAEVPTMAIE VY+ N+SII DEVL+HRLGLVPL VDPR F + +E E DEN T+VF+L C + DP ++ VYS EW+PQG Q ERF +RP+H+DIL+AKLR GQ IALE HCRKG+GKDHAK+SPVATASYRL P++ ++V GA A+ LV C M +FDIED G V AVV R CTMCR CIR PGW E++ L R+S+HFIFSVE G + A ++ EA+ VL K + L F +V++ +
Sbjct: 40 VIRVGQDAPHQ------PDVESESSYSFVEQSKRQVKVKIQSLTDDEIVFDLIGVDAAIANALRRILLAEVPTMAIEHVYIWNNSSIIQDEVLAHRLGLVPLKVDPREFQAF-------------------------PDNEEAEATDEN-TIVFKLDVTCKYDPEHPKDPTKAIHSS-VYSRDLEWVPQGNQEERF-GSIRPVHEDILIAKLRPGQSIALEAHCRKGLGKDHAKFSPVATASYRLMPKVEFTEKVEGADAKHLVEDCQMGLFDIED------IGGVPTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMMKAEELLPEALGVLAEKCNIALESFTQVDEDEEM 364 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350866 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10571 ID=mRNA_10571|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1156bp|location=Sequence derived from alignment at Contig_74:511630..514674- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCAAGCACATATTCGAGATGCGGGGCGATGCCCCGCACAGAGTCTTback to top protein sequence of jgi.p|Trimin1|350866 >Trimin1|350866|estExt_Genemark1.C_Ctg_740056 ID=Trimin1|350866|estExt_Genemark1.C_Ctg_740056|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=366bp MSKHIFEMRGDAPHRVFSAAKPDPAERGLRYPEKVRRRLRMHCCKETPEEback to top mRNA from alignment at Contig_74:511630..514674- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10571 ID=mRNA_10571|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3045bp|location=Sequence derived from alignment at Contig_74:511630..514674- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:511630..514674- >mRNA_10571 ID=mRNA_10571|Name=jgi.p|Trimin1|350866|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1098bp|location=Sequence derived from alignment at Contig_74:511630..514674- (Tribonema minus UTEX_B_3156 )back to top |