mRNA_10341 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA) HSP 1 Score: 407 bits (1045), Expect = 2.900e-143 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 3
Query: 15 MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKET 638
MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKET
Sbjct: 1 MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKET 208
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE) HSP 1 Score: 179 bits (454), Expect = 3.880e-53 Identity = 96/198 (48.48%), Postives = 132/198 (66.67%), Query Frame = 3
Query: 39 DALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 632
DAL YIDK+YDDPR +E+VH LIEEEMA F P +YL D+ + K +L +E ARV P+ +D +RY+++ P GA AED AW+ A+ NA+AQ HQ+NR LNLELL NYGA+ WL HNKA G E+ + + KR R+EA+ +N +R+ +Q + LW+L R+R E DKN+QI LA L+ ++K+ K
Sbjct: 21 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRF---KSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 215
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: T1ISD0_STRMM (Pre-mRNA-splicing factor SPF27 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1ISD0_STRMM) HSP 1 Score: 127 bits (320), Expect = 6.330e-33 Identity = 82/205 (40.00%), Postives = 110/205 (53.66%), Query Frame = 3
Query: 15 MASD-TVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKK 626
MASD TV VDALPYID+ YDDP +E ++EEE R+RP + D + L+ + I+ E R+ +PM L RYE+ P K DL AW + V N+ AQL HQ R NLEL+ YG AW +N L M + + LR +N R+ AQT G+KL HL+ V KN +I A A +++QLK+
Sbjct: 1 MASDSTVIVDALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLDY-LPALQLSTFETDIMKTEFERLQARLPMEMLSMKRYELPQPPPGKMTDLLAWSECVDNSMAQLEHQATRIANLELMSEYGCEAWKVYNAVLVQMLNQAQKQLQNLRKHVQEVNWHRKNAQTLAGEKLRHLEASWVGLVSKNYEIEQACAEVEKQLKR 204
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: G4M164_SCHMA (Pre-mRNA-splicing factor SPF27 n=10 Tax=Schistosoma TaxID=6181 RepID=G4M164_SCHMA) HSP 1 Score: 124 bits (312), Expect = 6.360e-32 Identity = 84/206 (40.78%), Postives = 113/206 (54.85%), Query Frame = 3
Query: 36 VDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRD--RAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRL---RDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKE 635
VDALPY DK YDDP +E L+EEEM R+RP K YL G + F+ ++ AE R+S +PM L RYE+ P K D+ AW+DA+ NA+AQL HQ R NLEL+ +YG NAW +N L ES++ K L R + IN +R++ QT G+ L L+ V KN +I A L+Q+L + E
Sbjct: 9 VDALPYFDKGYDDPGIREAAALLVEEEMKRYRPTKNYLEHLPSLSGPIQMKFET-EVMKAEFDRLSNRLPMEMLSMKRYELPPPPAGKMTDVKAWQDAMENAEAQLEHQATRIENLELMADYGCNAWKQYNNVL---ESSLQIYEKELLEIRRKIQEINWRRKQEQTAAGRHLKELEESWVGLVGKNYEIEQAILELEQELGVFSE 210
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A1I8M2M0_MUSDO (Pre-mRNA-splicing factor SPF27 n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8M2M0_MUSDO) HSP 1 Score: 125 bits (315), Expect = 9.080e-32 Identity = 69/187 (36.90%), Postives = 109/187 (58.29%), Query Frame = 3
Query: 30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQI 587
V VDALPYID+ YDDP +E ++EEE R+RP K YL + H + + + ++A E R+ +PM L RYE+ P G++ ++ AW +++ N+KAQL HQ+ R +NLEL+ +YG AW + + M++ + L+ E ++N QR++AQT G++L L+ V KN +I
Sbjct: 5 VIVDALPYIDQGYDDPGVRESALAMVEEECRRYRPTKNYLEH--MPHLSTSTFETKLMAQEFERIQNLIPMETLSMKRYELPPPSGSRLSEVSAWEESIDNSKAQLEHQWVRAMNLELMLDYGIEAWKAYLEVFVAMQAKAQGQLQELKKEIQDVNWQRKQAQTKAGERLRQLEASWVLLVSKNYEI 189
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A6J8E4B2_MYTCO (Pre-mRNA-splicing factor SPF27 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8E4B2_MYTCO) HSP 1 Score: 124 bits (310), Expect = 1.140e-31 Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 3
Query: 30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKE 635
V VDALPY D+ YD+P +E L++EE R+RP K YL +Y + F+ I+ E R+ +PM L+ RYE+ P K D+ AW +AV N++AQL HQ R LNLELL YG+NAW +N L+ M + LR + IN QR+ QT G KL L+ V KN +I A +++++++ ++
Sbjct: 5 VVVDALPYFDQGYDEPGVREAALALVDEETRRYRPTKNYLEYLPAPNY-IQFET-EIMKTEYERMQSRLPMEMLNMKRYELPPPPAGKMTDISAWNEAVENSQAQLEHQSLRILNLELLSEYGSNAWKSYNTVLSQMVEQAQKQLQELRKKIQEINWQRKNEQTQAGGKLKELEESWVGLVSKNYEIERACVEIEREIEEMEQ 205
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A1I8PUC9_STOCA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8PUC9_STOCA) HSP 1 Score: 125 bits (313), Expect = 1.200e-31 Identity = 72/198 (36.36%), Postives = 113/198 (57.07%), Query Frame = 3
Query: 30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQL 620
V VDALPYID+ YDDP +E ++EEE R+RP K YL A + + + ++A E R+ VPM L RYE+ P G++ ++ AW +++ N+KAQL HQ+ R +NLEL+ +YG AW + + +++ + L+ E ++N QR++AQT G+KL L+ V KN +I L++Q+
Sbjct: 5 VIVDALPYIDQGYDDPGVRESALAMVEEECRRYRPTKNYLEHLA--PLSTSTFETKLMAQEFERIQNRVPMETLSMKRYELPPPSGSRLSEVSAWEESIDNSKAQLEHQWVRAMNLELMLDYGIEAWKAYLEVFVALQAKAQVQLQELKKEIQDVNWQRKQAQTKAGEKLRSLEANWVLLVSKNYEIEQQCVELEKQI 200
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: UPI001C711394 (pre-mRNA-splicing factor SPF27-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C711394) HSP 1 Score: 123 bits (309), Expect = 1.560e-31 Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 3
Query: 21 SDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKK 626
S V VDALPYID YD+P +E ++E+E R+RP K YL + NLA + ++ E RV+ PM L RYE+ P K D+ AW + V N+ AQL HQ R +NLEL+ YGA AW HN L M ++ A + L+ E +N R+ QT G++L HL+ V +N +I A L+ ++ K
Sbjct: 2 SHDVIVDALPYIDTGYDEPGVREAAIAMVEDEKKRYRPTKNYLEH--LPPLNLAAFETEVMRGEFERVAARQPMDTLSMKRYELPPPPPGKMTDVAAWGECVDNSMAQLEHQSTRIMNLELMEEYGAEAWKEHNALLQRMLTHSQAQLQDLKKEIQELNWSRKNMQTKAGEELRHLESSWVSLVSRNYEIEQACVLLEAEIVK 202
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A504YQH5_FASGI (Pre-mRNA-splicing factor SPF27 n=4 Tax=Fasciolidae TaxID=27843 RepID=A0A504YQH5_FASGI) HSP 1 Score: 123 bits (309), Expect = 1.610e-31 Identity = 85/204 (41.67%), Postives = 110/204 (53.92%), Query Frame = 3
Query: 27 TVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRD--RAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRL---RDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQL 620
T VDALPY DK YDDP +E L+EEEM R+RP K YL G + F+ I+ AE R+S +PM L RYE+ P K D+ AW+DA+ NA+AQL HQ R NLEL+ YG NAW +N L E ++ KRL R IN +R++ QT G+KL L+ V KN +I A L++ L
Sbjct: 4 TAVVDALPYFDKGYDDPGIREAAALLVEEEMKRYRPTKNYLEHLPSLTGPFVPKFET-EIMKAEFDRLSNRLPMELLSMKRYELPPPPAGKMTDVKAWQDAMENAEAQLEHQATRIKNLELMAQYGCNAWKQYNSVL---EKDLQLHEKRLLEIRRRIQEINWRRKQEQTTAGKKLAELEETWVGLVGKNYEIEQAILELERNL 203
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A812DY29_SEPPH (Pre-mRNA-splicing factor SPF27 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DY29_SEPPH) HSP 1 Score: 123 bits (308), Expect = 2.040e-31 Identity = 78/198 (39.39%), Postives = 109/198 (55.05%), Query Frame = 3
Query: 30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQL 620
V VDALPY DK Y++P ++ L+EEE R+RP K YL +Y AF+ I+ E+ R+ +PM L RYE+ P K D+ AW + V N++AQL HQ R LNLEL+ YGANAW +N L M + ++ + +IN QR+ QT G KL L+ Q V KN +I A A L++++
Sbjct: 5 VIVDALPYYDKGYEEPGIRDSALALVEEETRRYRPTKNYLDHLPAPNYT-AFET-EIMKTEIERLQSRLPMEMLSMKRYELPQPPAGKMTDIAAWSECVENSQAQLEHQALRILNLELMSEYGANAWKTYNTVLVQMVEQGQKQLQDIKKKIQDINWQRKNEQTEAGAKLKELENQWVGLVSKNYEIERACAELEKEI 200 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10341 ID=mRNA_10341|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=655bp|location=Sequence derived from alignment at Contig_67:49185..50946- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTCAAGTCAGATCATGGCAAGCGATACCGTGTTTGTAGACGCTCTTCCCback to top protein sequence of jgi.p|Trimin1|84130 >Trimin1|84130|CE84129_99 ID=Trimin1|84130|CE84129_99|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGback to top mRNA from alignment at Contig_67:49185..50946- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1762bp|location=Sequence derived from alignment at Contig_67:49185..50946- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_67:49185..50946- >mRNA_10341 ID=mRNA_10341|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_67:49185..50946- (Tribonema minus UTEX_B_3156 )back to top |