mRNA_10341 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|84130
Unique NamemRNA_10341
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A835YMV2_9STRA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMV2_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 2.900e-143
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 3
Query:   15 MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKET 638
            MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKET
Sbjct:    1 MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKET 208          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.880e-53
Identity = 96/198 (48.48%), Postives = 132/198 (66.67%), Query Frame = 3
Query:   39 DALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYK 632
            DAL YIDK+YDDPR +E+VH LIEEEMA F P +YL D+ +        K  +L +E ARV    P+  +D +RY+++ P GA AED  AW+ A+ NA+AQ  HQ+NR LNLELL NYGA+ WL HNKA  G E+ + +  KR R+EA+ +N +R+ +Q    + LW+L R+R E  DKN+QI LA   L+ ++K+ K
Sbjct:   21 DALSYIDKDYDDPRMKEIVHSLIEEEMAAFEPPDYLADKPLPTTRF---KSPLLKSEWARVRAEKPLDVIDTSRYDLQPPQGAAAEDEAAWKRALDNARAQTEHQHNRLLNLELLQNYGASMWLGHNKAEEGTEAAVASQAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 215          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: T1ISD0_STRMM (Pre-mRNA-splicing factor SPF27 n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1ISD0_STRMM)

HSP 1 Score: 127 bits (320), Expect = 6.330e-33
Identity = 82/205 (40.00%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   15 MASD-TVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKK 626
            MASD TV VDALPYID+ YDDP  +E    ++EEE  R+RP +   D  +    L+  +  I+  E  R+   +PM  L   RYE+  P   K  DL AW + V N+ AQL HQ  R  NLEL+  YG  AW  +N  L  M +      + LR     +N  R+ AQT  G+KL HL+   V    KN +I  A A +++QLK+
Sbjct:    1 MASDSTVIVDALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLDY-LPALQLSTFETDIMKTEFERLQARLPMEMLSMKRYELPQPPPGKMTDLLAWSECVDNSMAQLEHQATRIANLELMSEYGCEAWKVYNAVLVQMLNQAQKQLQNLRKHVQEVNWHRKNAQTLAGEKLRHLEASWVGLVSKNYEIEQACAEVEKQLKR 204          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: G4M164_SCHMA (Pre-mRNA-splicing factor SPF27 n=10 Tax=Schistosoma TaxID=6181 RepID=G4M164_SCHMA)

HSP 1 Score: 124 bits (312), Expect = 6.360e-32
Identity = 84/206 (40.78%), Postives = 113/206 (54.85%), Query Frame = 3
Query:   36 VDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRD--RAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRL---RDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKE 635
            VDALPY DK YDDP  +E    L+EEEM R+RP K YL       G   + F+   ++ AE  R+S  +PM  L   RYE+  P   K  D+ AW+DA+ NA+AQL HQ  R  NLEL+ +YG NAW  +N  L   ES++    K L   R +   IN +R++ QT  G+ L  L+   V    KN +I  A   L+Q+L  + E
Sbjct:    9 VDALPYFDKGYDDPGIREAAALLVEEEMKRYRPTKNYLEHLPSLSGPIQMKFET-EVMKAEFDRLSNRLPMEMLSMKRYELPPPPAGKMTDVKAWQDAMENAEAQLEHQATRIENLELMADYGCNAWKQYNNVL---ESSLQIYEKELLEIRRKIQEINWRRKQEQTAAGRHLKELEESWVGLVGKNYEIEQAILELEQELGVFSE 210          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A1I8M2M0_MUSDO (Pre-mRNA-splicing factor SPF27 n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8M2M0_MUSDO)

HSP 1 Score: 125 bits (315), Expect = 9.080e-32
Identity = 69/187 (36.90%), Postives = 109/187 (58.29%), Query Frame = 3
Query:   30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQI 587
            V VDALPYID+ YDDP  +E    ++EEE  R+RP K YL    + H + +  +  ++A E  R+   +PM  L   RYE+  P G++  ++ AW +++ N+KAQL HQ+ R +NLEL+ +YG  AW  + +    M++      + L+ E  ++N QR++AQT  G++L  L+   V    KN +I
Sbjct:    5 VIVDALPYIDQGYDDPGVRESALAMVEEECRRYRPTKNYLEH--MPHLSTSTFETKLMAQEFERIQNLIPMETLSMKRYELPPPSGSRLSEVSAWEESIDNSKAQLEHQWVRAMNLELMLDYGIEAWKAYLEVFVAMQAKAQGQLQELKKEIQDVNWQRKQAQTKAGERLRQLEASWVLLVSKNYEI 189          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A6J8E4B2_MYTCO (Pre-mRNA-splicing factor SPF27 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8E4B2_MYTCO)

HSP 1 Score: 124 bits (310), Expect = 1.140e-31
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 3
Query:   30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKKYKE 635
            V VDALPY D+ YD+P  +E    L++EE  R+RP K YL      +Y + F+   I+  E  R+   +PM  L+  RYE+  P   K  D+ AW +AV N++AQL HQ  R LNLELL  YG+NAW  +N  L+ M        + LR +   IN QR+  QT  G KL  L+   V    KN +I  A   +++++++ ++
Sbjct:    5 VVVDALPYFDQGYDEPGVREAALALVDEETRRYRPTKNYLEYLPAPNY-IQFET-EIMKTEYERMQSRLPMEMLNMKRYELPPPPAGKMTDISAWNEAVENSQAQLEHQSLRILNLELLSEYGSNAWKSYNTVLSQMVEQAQKQLQELRKKIQEINWQRKNEQTQAGGKLKELEESWVGLVSKNYEIERACVEIEREIEEMEQ 205          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A1I8PUC9_STOCA (Pre-mRNA-splicing factor SPF27 n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8PUC9_STOCA)

HSP 1 Score: 125 bits (313), Expect = 1.200e-31
Identity = 72/198 (36.36%), Postives = 113/198 (57.07%), Query Frame = 3
Query:   30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQL 620
            V VDALPYID+ YDDP  +E    ++EEE  R+RP K YL   A    + +  +  ++A E  R+   VPM  L   RYE+  P G++  ++ AW +++ N+KAQL HQ+ R +NLEL+ +YG  AW  + +    +++      + L+ E  ++N QR++AQT  G+KL  L+   V    KN +I      L++Q+
Sbjct:    5 VIVDALPYIDQGYDDPGVRESALAMVEEECRRYRPTKNYLEHLA--PLSTSTFETKLMAQEFERIQNRVPMETLSMKRYELPPPSGSRLSEVSAWEESIDNSKAQLEHQWVRAMNLELMLDYGIEAWKAYLEVFVALQAKAQVQLQELKKEIQDVNWQRKQAQTKAGEKLRSLEANWVLLVSKNYEIEQQCVELEKQI 200          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: UPI001C711394 (pre-mRNA-splicing factor SPF27-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C711394)

HSP 1 Score: 123 bits (309), Expect = 1.560e-31
Identity = 77/203 (37.93%), Postives = 108/203 (53.20%), Query Frame = 3
Query:   21 SDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQLKK 626
            S  V VDALPYID  YD+P  +E    ++E+E  R+RP K YL    +   NLA  +  ++  E  RV+   PM  L   RYE+  P   K  D+ AW + V N+ AQL HQ  R +NLEL+  YGA AW  HN  L  M ++  A  + L+ E   +N  R+  QT  G++L HL+   V    +N +I  A   L+ ++ K
Sbjct:    2 SHDVIVDALPYIDTGYDEPGVREAAIAMVEDEKKRYRPTKNYLEH--LPPLNLAAFETEVMRGEFERVAARQPMDTLSMKRYELPPPPPGKMTDVAAWGECVDNSMAQLEHQSTRIMNLELMEEYGAEAWKEHNALLQRMLTHSQAQLQDLKKEIQELNWSRKNMQTKAGEELRHLESSWVSLVSRNYEIEQACVLLEAEIVK 202          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A504YQH5_FASGI (Pre-mRNA-splicing factor SPF27 n=4 Tax=Fasciolidae TaxID=27843 RepID=A0A504YQH5_FASGI)

HSP 1 Score: 123 bits (309), Expect = 1.610e-31
Identity = 85/204 (41.67%), Postives = 110/204 (53.92%), Query Frame = 3
Query:   27 TVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRD--RAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRL---RDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQL 620
            T  VDALPY DK YDDP  +E    L+EEEM R+RP K YL       G +   F+   I+ AE  R+S  +PM  L   RYE+  P   K  D+ AW+DA+ NA+AQL HQ  R  NLEL+  YG NAW  +N  L   E ++    KRL   R     IN +R++ QT  G+KL  L+   V    KN +I  A   L++ L
Sbjct:    4 TAVVDALPYFDKGYDDPGIREAAALLVEEEMKRYRPTKNYLEHLPSLTGPFVPKFET-EIMKAEFDRLSNRLPMELLSMKRYELPPPPAGKMTDVKAWQDAMENAEAQLEHQATRIKNLELMAQYGCNAWKQYNSVL---EKDLQLHEKRLLEIRRRIQEINWRRKQEQTTAGKKLAELEETWVGLVGKNYEIEQAILELERNL 203          
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Match: A0A812DY29_SEPPH (Pre-mRNA-splicing factor SPF27 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DY29_SEPPH)

HSP 1 Score: 123 bits (308), Expect = 2.040e-31
Identity = 78/198 (39.39%), Postives = 109/198 (55.05%), Query Frame = 3
Query:   30 VFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRP-KEYLRDRAIGHYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWRDAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGKRLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQQL 620
            V VDALPY DK Y++P  ++    L+EEE  R+RP K YL      +Y  AF+   I+  E+ R+   +PM  L   RYE+  P   K  D+ AW + V N++AQL HQ  R LNLEL+  YGANAW  +N  L  M        + ++ +  +IN QR+  QT  G KL  L+ Q V    KN +I  A A L++++
Sbjct:    5 VIVDALPYYDKGYEEPGIRDSALALVEEETRRYRPTKNYLDHLPAPNYT-AFET-EIMKTEIERLQSRLPMEMLSMKRYELPQPPAGKMTDIAAWSECVENSQAQLEHQALRILNLELMSEYGANAWKTYNTVLVQMVEQGQKQLQDIKKKIQDINWQRKNEQTEAGAKLKELENQWVGLVSKNYEIERACAELEKEI 200          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|84130 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMV2_9STRA2.900e-143100.00Pre-mRNA-splicing factor SPF27 n=1 Tax=Tribonema m... [more]
A0A6H5L2U2_9PHAE3.880e-5348.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
T1ISD0_STRMM6.330e-3340.00Pre-mRNA-splicing factor SPF27 n=1 Tax=Strigamia m... [more]
G4M164_SCHMA6.360e-3240.78Pre-mRNA-splicing factor SPF27 n=10 Tax=Schistosom... [more]
A0A1I8M2M0_MUSDO9.080e-3236.90Pre-mRNA-splicing factor SPF27 n=1 Tax=Musca domes... [more]
A0A6J8E4B2_MYTCO1.140e-3137.93Pre-mRNA-splicing factor SPF27 n=3 Tax=Mytilus Tax... [more]
A0A1I8PUC9_STOCA1.200e-3136.36Pre-mRNA-splicing factor SPF27 n=1 Tax=Stomoxys ca... [more]
UPI001C7113941.560e-3137.93pre-mRNA-splicing factor SPF27-like n=1 Tax=Penaeu... [more]
A0A504YQH5_FASGI1.610e-3141.67Pre-mRNA-splicing factor SPF27 n=4 Tax=Fasciolidae... [more]
A0A812DY29_SEPPH2.040e-3139.39Pre-mRNA-splicing factor SPF27 n=1 Tax=Sepia phara... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:49185..50946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|84130|CE84129_99
KEGG TC3.A.20.1,9.A.17.1
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
KEGG ModuleM00353,M00355
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG koko:K12861,ko:K13336,ko:K20161
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
Preferred nameBCAS2
DescriptionmRNA processing
COG categoryA
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3096@1|root,KOG3096@2759|Eukaryota
Evalue3.97e-45
Seed ortholog2880.D8LQA4
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005540.1
TranscriptId84452
TrackFilteredModels1
ProteinId84130
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|84130gene_10341Tribonema minus UTEX_B_3156 geneContig_67 49185..50946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10341_2exon_10341_2Tribonema minus UTEX_B_3156 exonContig_67 49185..49417 -
exon_10341_1exon_10341_1Tribonema minus UTEX_B_3156 exonContig_67 50525..50946 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10341UTR3_10341Tribonema minus UTEX_B_3156 three_prime_UTRContig_67 49185..49198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10341CDS_10341Tribonema minus UTEX_B_3156 CDSContig_67 50525..50932 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10341UTR5_10341Tribonema minus UTEX_B_3156 five_prime_UTRContig_67 50933..50946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|84130Trimin1|84130|CE84129_99Tribonema minus UTEX_B_3156 polypeptideContig_67 49199..50932 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=655bp|location=Sequence derived from alignment at Contig_67:49185..50946- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTCAAGTCAGATCATGGCAAGCGATACCGTGTTTGTAGACGCTCTTCCC
TACATCGACAAGGAGTACGATGATCCTCGCACCCAGGAGGTGGTGCATGG
CCTCATAGAGGAAGAAATGGCTAGATTCAGACCCAAGGAGTACCTCAGGG
ACCGCGCCATTGGTCATTACAATCTTGCGTTTAAAAAGGGATCTATACTG
GCGGCAGAGCTGGCGAGGGTGTCGAAAGGCGTGCCGATGGCAGCGCTGGA
TCAAACGAGATATGAGGTGAGGGCGCCGGATGGTGCCAAGGCGGAAGATC
TAGGCGCTTGGCGTGATGCTGTTCGCAACGCCAAGGCGCAGCTGGGGCAC
CAATACAACAGGCAGCTGAACTTGGAGCTGCTGGGGAACTATGGAGCAAA
TGCATGGTTGCATCACAACAAGGCTCTGGCAGGCATGGAATCTAACATGG
TTGCGACTGGCAAGCGCCTTCGAGATGAAGCAGACAACATCAATGCTCAA
CGGCAGGAGGCACAGACAGGACTGGGACAGAAGCTCTGGCACCTGGATAG
GCAACGCGTAGAGACCGCAGACAAGAATTTGCAGATAGCACTCGCAAATG
CTGCACTGCAGCAGCAGTTGAAGAAGTATAAAGAAACGTGATGTTCACAT
TCCGC
back to top

protein sequence of jgi.p|Trimin1|84130

>Trimin1|84130|CE84129_99 ID=Trimin1|84130|CE84129_99|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MASDTVFVDALPYIDKEYDDPRTQEVVHGLIEEEMARFRPKEYLRDRAIG
HYNLAFKKGSILAAELARVSKGVPMAALDQTRYEVRAPDGAKAEDLGAWR
DAVRNAKAQLGHQYNRQLNLELLGNYGANAWLHHNKALAGMESNMVATGK
RLRDEADNINAQRQEAQTGLGQKLWHLDRQRVETADKNLQIALANAALQQ
QLKKYKET*
back to top

mRNA from alignment at Contig_67:49185..50946-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1762bp|location=Sequence derived from alignment at Contig_67:49185..50946- (Tribonema minus UTEX_B_3156 )
CCTCAAGTCAGATCATGGCAAGCGATACCGTGTTTGTAGACGCTCTTCCC TACATCGACAAGGAGTACGATGATCCTCGCACCCAGGAGGTGGTGCATGG CCTCATAGAGGAAGAAATGGCTAGATTCAGACCCAAGGAGTACCTCAGGG ACCGCGCCATTGGTCATTACAATCTTGCGTTTAAAAAGGGATCTATACTG GCGGCAGAGCTGGCGAGGGTGTCGAAAGGCGTGCCGATGGCAGCGCTGGA TCAAACGAGATATGAGGTGAGGGCGCCGGATGGTGCCAAGGCGGAAGATC TAGGCGCTTGGCGTGATGCTGTTCGCAACGCCAAGGCGCAGCTGGGGCAC CAATACAACAGGCAGCTGAACTTGGAGCTGCTGGGGAACTATGGAGCAAA TGCATGGTTGCATCACAACAAGGTGAGTTAGCAAGTATAGCCAGCTTGTG TTTTTTCGCGTTGGAGAAAAGATCAGTGCGATGTCCAGCAGACCAATGAT TGCATCGGCTCCAGAAGCAGCAGTAGCAGCAGCTGAGCAATGGTCAACGA TTTGCGGAATTGGAGAATGCACAGATCAGTTGCAGATGGAATTCAAGTGT TGGATACATATGATAGCCCATATTCTAGTTATCGTGTGAAAGCTTCGGGC TTCTGGACTGCATATCATATGCAATGCGTGAATATATAGCGGCTGCCAAA CGGGGTGCTGCTTCTGACCTGTTCGAGTGTTTGCAAGCAGTTGCCCGACG TTCGCAAGCAGTGGTGTTTGGTGTTGGTCAGACAGCTAGGTTTGACTGGG ACTGTAAGAAGGCTCTCGGTAGGTTGTTTTAGTACCACTTGGAGTTTTAC TGGCAATTCCGTGACCCCTCTGATGCCGGAGTGTTGTCAGTATTGCTGAT GAAGGATTTATAGTACTCAAGGCAAATACTGCCATAAGCATATTGCATAC CATTGCAATCCGCTGGCTCGTCATACGCAAGTGGCGTTGAGTGTTAGACA GCAATGATTTGATTGAATATGTTATGTGAGCCGATAATTCAAGGCTTGTT GCGACATCGAAGCCTCCTTGCACAGCCACTCTGTCAGCACTTCATTTGTA GAGTCTGTGCGCTATAATTACAGAATAATGTTGGTAGATAGGAATGCGCG TACCATGCAGCACACTGCTACCACTTGACTGCAGCAGTTGCAACATCAAC AAGAGTTAGGGCTACCGCAAGTGCCTGCAGCAGTAAGCTCCATATTGCAG GTCCATCGATCAATCGCGACATGCACTTGTTCATTATGAGCACTGTTTAT TCATGTCATAGCGCCCACGCTTCCTATCTATGGAGATGATTGACGTGCAA ACCATCATCAACCCGCAGCAAGCTAGTCTGTGTCACATGCATTCAATTTG TGTCCTGTCCTTCTTGCTCACGTATCCCAAGCAAGCCATGTCACCTATAC AGCTTCACTGTGCTTGACATGTCAATCACTGTCACTCCTTGTCCTGCTAC ACACATGTACACTATGTACTGTACTGCAGGCTCTGGCAGGCATGGAATCT AACATGGTTGCGACTGGCAAGCGCCTTCGAGATGAAGCAGACAACATCAA TGCTCAACGGCAGGAGGCACAGACAGGACTGGGACAGAAGCTCTGGCACC TGGATAGGCAACGCGTAGAGACCGCAGACAAGAATTTGCAGATAGCACTC GCAAATGCTGCACTGCAGCAGCAGTTGAAGAAGTATAAAGAAACGTGATG TTCACATTCCGC
back to top

Coding sequence (CDS) from alignment at Contig_67:49185..50946-

>mRNA_10341 ID=mRNA_10341|Name=jgi.p|Trimin1|84130|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_67:49185..50946- (Tribonema minus UTEX_B_3156 )
ATGGCAAGCGATACCGTGTTTGTAGACGCTCTTCCCTACATCGACAAGGA
GTACGATGATCCTCGCACCCAGGAGGTGGTGCATGGCCTCATAGAGGAAG
AAATGGCTAGATTCAGACCCAAGGAGTACCTCAGGGACCGCGCCATTGGT
CATTACAATCTTGCGTTTAAAAAGGGATCTATACTGGCGGCAGAGCTGGC
GAGGGTGTCGAAAGGCGTGCCGATGGCAGCGCTGGATCAAACGAGATATG
AGGTGAGGGCGCCGGATGGTGCCAAGGCGGAAGATCTAGGCGCTTGGCGT
GATGCTGTTCGCAACGCCAAGGCGCAGCTGGGGCACCAATACAACAGGCA
GCTGAACTTGGAGCTGCTGGGGAACTATGGAGCAAATGCATGGTTGCATC
ACAACAAGGCTCTGGCAGGCATGGAATCTAACATGGTTGCGACTGGCAAG
CGCCTTCGAGATGAAGCAGACAACATCAATGCTCAACGGCAGGAGGCACA
GACAGGACTGGGACAGAAGCTCTGGCACCTGGATAGGCAACGCGTAGAGA
CCGCAGACAAGAATTTGCAGATAGCACTCGCAAATGCTGCACTGCAGCAG
CAGTTGAAGAAGTATAAAGAAACGTGA
back to top