Homology
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match:
D7FMF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF4_ECTSI)
HSP 1 Score: 143 bits (360), Expect = 2.390e-37
Identity = 94/141 (66.67%), Postives = 108/141 (76.60%), Query Frame = 3
Query: 45 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKKGSSGXXXXXXXXXXXXXXXXXXXKEPKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGS 467
MR A VI+CC AA TL AFV+SKS +RRA ALSE R + AAT Q+E++V+GPVVDLRGGKTTGSKKG XXXXXXXXXXXXXX KPSF+ATIKAFF+SL++PHF LKL+AKKE+HNTVHGSGS
Sbjct: 1 MRLSTAASVIICCHAAATLNSSHAFVVSKSSIRRAGALSEGRESAV-AATMGQMEQVVDGPVVDLRGGKTTGSKKGKESSAKXXXXXXXXXXXXXX------KPSFIATIKAFFQSLVNPHFALKLQAKKEQHNTVHGSGS 134
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match:
A0A6H5KGU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU7_9PHAE)
HSP 1 Score: 84.0 bits (206), Expect = 3.360e-16
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query: 45 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKK 269
MR ++ I+CC AA TL A V+SKS +RRA ALSE R + AA DQ+E++V+GPVVDLRGGKTTGSKK
Sbjct: 2 MRLSTVSSAIICCHAAATLNSSHALVVSKSSIRRAGALSEGRESAV-AAAMDQMEQVVDGPVVDLRGGKTTGSKK 75
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.39e-37 / Id = 66.67 Expect = 3.36e-16 / Id = 58.67 Sequence D7FMF4_ECTSI A0A6H5KGU7_9PHAE
Match Name E-value Identity Description
D7FMF4_ECTSI 2.390e-37 66.67 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5KGU7_9PHAE 3.360e-16 58.67 Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category chloroplast Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-05_000940.1 Exons 4 Model size 1462 Cds size 429 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927379.7458553-UTR-C-linearis_contig103:491800..492789 1622927379.7458553-UTR-C-linearis_contig103:491800..492789 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 491801..492789 - 1690879665.7320602-UTR-C-linearis_contig103:491800..492789 1690879665.7320602-UTR-C-linearis_contig103:491800..492789 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 491801..492789 - 1622927379.8052418-UTR-C-linearis_contig103:495185..495229 1622927379.8052418-UTR-C-linearis_contig103:495185..495229 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 495186..495229 - 1690879665.7840636-UTR-C-linearis_contig103:495185..495229 1690879665.7840636-UTR-C-linearis_contig103:495185..495229 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig103 495186..495229 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927379.7585998-CDS-C-linearis_contig103:492789..492856 1622927379.7585998-CDS-C-linearis_contig103:492789..492856 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 492790..492856 - 1690879665.7449057-CDS-C-linearis_contig103:492789..492856 1690879665.7449057-CDS-C-linearis_contig103:492789..492856 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 492790..492856 - 1622927379.7698038-CDS-C-linearis_contig103:493641..493778 1622927379.7698038-CDS-C-linearis_contig103:493641..493778 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 493642..493778 - 1690879665.7583008-CDS-C-linearis_contig103:493641..493778 1690879665.7583008-CDS-C-linearis_contig103:493641..493778 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 493642..493778 - 1622927379.7815688-CDS-C-linearis_contig103:493945..494081 1622927379.7815688-CDS-C-linearis_contig103:493945..494081 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 493946..494081 - 1690879665.7677283-CDS-C-linearis_contig103:493945..494081 1690879665.7677283-CDS-C-linearis_contig103:493945..494081 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 493946..494081 - 1622927379.7911305-CDS-C-linearis_contig103:495096..495185 1622927379.7911305-CDS-C-linearis_contig103:495096..495185 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 495097..495185 - 1690879665.7756944-CDS-C-linearis_contig103:495096..495185 1690879665.7756944-CDS-C-linearis_contig103:495096..495185 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 495097..495185 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.854.1
>prot_C-linearis_contig103.854.1 ID=prot_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=143bp
MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAAT back to top mRNA from alignment at C-linearis_contig103:491801..495229-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.854.1 ID=mRNA_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3429bp|location=Sequence derived from alignment at C-linearis_contig103:491801..495229- (Chordaria linearis ClinC8C monoicous)CACACGCACCAACACCCAAGCGCCACCTCTCTGTCTGTAGCACC ATGAGG
TTCGGCGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGTGACCCT
GATTGGCGGCGATGCCTTCGTGATTTCCAAAAG GTGAAGAGAGATGGGAC
GATACGATAGCTTCATGATCAACCTGTACGCCTGTACGCGAGGAAACGTT
GTTAGAGGGCAACACTGGCTTGCAGCTCTTGCTGGCAGCTGGATGCTCTT
GTACAGGATGATTGCTAGAATCACGTCCACGGGGTTGGCCTTGTCGATCA
TGCAGGCTTTGTCGTCGTTGACCTGATAGTTTGGCGGCCAGGAAGGTGTT
GATGCTCCAGGAGTGAAAAAAAAACCGCGTGTGCCACTTGTCATCACGTG
GGATGAGAATGAGGATGCCTGTGCCTCACGGTGGCCGGAGTCAATGTGGG
TGGGCTGCTACTGCCAGTTTTGCCGGGGGGTTCTAAGCAGTGTAGCGAGG
TGAAATGTACGGCAACCTGTGGGCCCTAAAGTCGAAGTGCAATCTCCATT
CAGCCGGCACGAAAGCGGCGTTGTTTCCTTGTCGACGCGCTGCTGCTACT
GTGAATATACAGACATAAGTACATGTGTTTGGGCTTCCCTCATATCTAGC
GCCATGGTGTGTGTGATGCTTCGTGTCTTCGCCGTACAATTTGTTGTGCT
AGCAACTGGTTGTGTTGCGACACCAAGCCGCGGCAGCCCCCAACAAGTGC
TCTTGTCTCTGTCGTCGGACGTGTGCACTCCTTTATATGGCTCTCTCTGG
TTTGTTCCGCAACCAAACTGGCCTCTGCCCTTGACGGGGCCTGTTGAAAT
CTAGCGGACGGCACTGCCGTGTTTCTTTTTCTTCCCAAAAGCAGCACACA
AGTTCTACGTAGCGTTCTTTGTCTCTCCCTGCCACCCGCTGTGTGCTGTG
GACTTTGGCCCATTGGTAAGTAGCCACCGACGGTACTCTGCTGTCAGCAT
TTTATAGCATGTACTGACTGGTCCCGAAGCTGATCTGGCAGCGATCGACC
TACTCCACCCTCATTCATTGCAAACCCGACCAACCTGAGACGAAACATCC
ATTCATATCTCCATCTTTGTGTCTACTACCTATGTATTTCGGTATCAGTT
TTATGCGACGGGCGGCCGCGTTGTCGGAGAGCCGAGGGGACACAATACAC
GCCGCCACGGCGGATCAGCTGGAGCGGATTGTGGAAGGGCCCGTCGTAGA
TCTCAGGGGGGGCAAGACAACAGGGTCAAAAAAG GTGGGCGAATTCTGGG
ATACATGGTTATGCATCGTCCACTGCTCGAGGTTACCTGTACCTGATATG
TAGTTCATGAAGTCATTAACGGTTCACCTCTTGTAAGGGATTGGGTTTGA
GCAACCCCGCCATCCCGCCTCGCGGTTTACATCATTCTTCTCTTTGCGCA
GGGGTCGTCTGGAAAGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCT
CCAAGCTGTCCAAGTCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCC
ACCATCAAGGCGTTCTTCAAGTCGCTCATCGACCCACA GTGAGTGCTTTA
GCAGTAGGATTCTCCTGTCTTTTGCAGTAGTCTAGTGTTTCCCCACCCAA
CGATGCGATTTTCCGTCAAGCGGCGATCGAATTGAGCGCTTTATTCTCAG
AGCTCCTCCAGCGATGCTTCGACCATGTGCGGTTTGTCAGGTCCTGTACG
TGGCTCCTGTGCTCTTCTTTCGCTACTCCTAGACATGAGCCGTCTACGCC
TGGCCTGTGAACAAAACGTTGGCAGGGGGGCTGCTGTAGGCACGTTAACT
CTCCCCTCACCTCCCCCCAGCGAAAATGGTCCAATGTCAGCAATCCGGCG
TTGTCTCGCTCCATCGGAGTATTGTTCGGCGCTGGGCGGTTTTTTGCTAT
TGTCGGCGGTTGTGTGTGTTTCCGGTGGCCTCGACGTCACATTTTGTTTC
TTTCAACCCAGGGACATGCAGCTGCGGGTGCGGTGTGTTTGGAGTGCTTC
TCCGGCAGTAGTCGCGGGCGATACGCTATTGTAGTGAGGGTGTGGACTGG
GTGGTGGAATACTCACGTGGTGCTTTTTTTGGACGCAGCTATGACCAATA
CATTCGAGAGTAGAAAAGTCGATCATGCTGTACAGGCACGACATATCAAG
GTATACCGGTATTGGGTACATGCATTTTTGGATTGTTATAGTCTATACAC
TTGTCGGATGCCACGAAGTGAAATAGTATTTCAATCTCATGATAACGAAG
CGAATGAGTGTCACACAATCTCCCCAACGCCCCGCCACCCTCCTGATCTC
TCTCCCCCCCCGCATCTCCTCAGCTTTGTCTTGAAGCTGGAAGCCAAGAA
GGAGAAGCACAACACGGTCCACGGGTCTGGCTCGACATGA CGTCATTGGA
TTTTGGACCAAAATTACTCAGTTCAACAAAGTCGGTTTTTTGTGCCATGT
TGTGTGCTGGCCGTTTTTCATACTGCCAACGCACAACTTAGAATGGTTTG
CACGTAGCTTTGTTGTTTTTGCGAGGAAGGCTGGGGGAACAGTAATTGCG
CCGCCTGGATTGGGAAACAGGCATTTCACGAAGGGTATGGTGATGAATTT
TCTCTCCCACTGCTGTCCCCCCCAAGTTCTCGCGCCAAGTTTTGCTTTTT
TCGTGTAAGGGGAGGGGGCGGGCGGCGTTGAAGGCTTTTGGTGTCTCGAG
TTCACAACAGTCGCCGCGTTTTGGTGTTTCAATCCGTCCGAGCTTGCTTC
TGTGATGCGTGATGGATGTACAATAGAAATGTTGTGTGATGTTTGGTACA
CTACGGCGTTTCCCTTTTTGTGTTCGCCCTCGCCCAAAGAGCGGTTTTGT
CCATACCAGTCTGGGTCATTGCTGCTGTATTTTCGTCCAACAATGCTGTA
AGAACGCCGCTTCTTCTGTCTTCTTGCACCTTGCACGAAATAAGGGTGGG
TGAGGGCGGCCTCTGCTGTGGCCGGTTCCAACCTTCCGGTACCGTTGAAT
CCAGAGTGTTGTCTCCATGCCCAATATCCATGCCATGTGCAGCTATCATC
CCAGCGAAACCGCACCATCTGAGTGTGTGTGAAGCTCCACCACGGGTGGT
TGGCGCACATAATTATCCTCACCGCGCAACGTGAAATGGACGAAGATGTC
CTGATTGCATAGGATTTGCGTACTCGCAGTGGTGGAAAAATTGAGATGGT
TCAACTTGAAAGTTCCTTGTCATACTTTCTTGGCGAACTTCTTTTTCTCG
TGCCGCCAACGATGGGATGGGTGTGTGTGTGTGTGTGTGTGTGTTTTCGC
TTTTCGTAGCCTGCCTCCTCCTCTTCAAGACAAATGCTGTAGCTAATATT
GTAGGTTACCATCCGGGGTCACACAGGAG back to top Coding sequence (CDS) from alignment at C-linearis_contig103:491801..495229-
>mRNA_C-linearis_contig103.854.1 ID=mRNA_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at C-linearis_contig103:491801..495229- (Chordaria linearis ClinC8C monoicous) back to top