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Homology
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match: D7FMF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF4_ECTSI) HSP 1 Score: 143 bits (360), Expect = 2.390e-37 Identity = 94/141 (66.67%), Postives = 108/141 (76.60%), Query Frame = 3 Query: 45 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKKGSSGXXXXXXXXXXXXXXXXXXXKEPKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGS 467
MR A VI+CC AA TL AFV+SKS +RRA ALSE R + AAT Q+E++V+GPVVDLRGGKTTGSKKG XXXXXXXXXXXXXX KPSF+ATIKAFF+SL++PHF LKL+AKKE+HNTVHGSGS
Sbjct: 1 MRLSTAASVIICCHAAATLNSSHAFVVSKSSIRRAGALSEGRESAV-AATMGQMEQVVDGPVVDLRGGKTTGSKKGKESSAKXXXXXXXXXXXXXX------KPSFIATIKAFFQSLVNPHFALKLQAKKEQHNTVHGSGS 134
BLAST of mRNA_C-linearis_contig103.854.1 vs. uniprot
Match: A0A6H5KGU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU7_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 3.360e-16 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 3 Query: 45 MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAATADQLERIVEGPVVDLRGGKTTGSKK 269
MR ++ I+CC AA TL A V+SKS +RRA ALSE R + AA DQ+E++V+GPVVDLRGGKTTGSKK
Sbjct: 2 MRLSTVSSAIICCHAAATLNSSHALVVSKSSIRRAGALSEGRESAV-AAAMDQMEQVVDGPVVDLRGGKTTGSKK 75
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | chloroplast |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-05_000940.1 |
Exons | 4 |
Model size | 1462 |
Cds size | 429 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927379.7458553-UTR-C-linearis_contig103:491800..492789 | 1622927379.7458553-UTR-C-linearis_contig103:491800..492789 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 491801..492789 - |
1690879665.7320602-UTR-C-linearis_contig103:491800..492789 | 1690879665.7320602-UTR-C-linearis_contig103:491800..492789 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 491801..492789 - |
1622927379.8052418-UTR-C-linearis_contig103:495185..495229 | 1622927379.8052418-UTR-C-linearis_contig103:495185..495229 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 495186..495229 - |
1690879665.7840636-UTR-C-linearis_contig103:495185..495229 | 1690879665.7840636-UTR-C-linearis_contig103:495185..495229 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig103 495186..495229 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927379.7585998-CDS-C-linearis_contig103:492789..492856 | 1622927379.7585998-CDS-C-linearis_contig103:492789..492856 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 492790..492856 - |
1690879665.7449057-CDS-C-linearis_contig103:492789..492856 | 1690879665.7449057-CDS-C-linearis_contig103:492789..492856 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 492790..492856 - |
1622927379.7698038-CDS-C-linearis_contig103:493641..493778 | 1622927379.7698038-CDS-C-linearis_contig103:493641..493778 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 493642..493778 - |
1690879665.7583008-CDS-C-linearis_contig103:493641..493778 | 1690879665.7583008-CDS-C-linearis_contig103:493641..493778 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 493642..493778 - |
1622927379.7815688-CDS-C-linearis_contig103:493945..494081 | 1622927379.7815688-CDS-C-linearis_contig103:493945..494081 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 493946..494081 - |
1690879665.7677283-CDS-C-linearis_contig103:493945..494081 | 1690879665.7677283-CDS-C-linearis_contig103:493945..494081 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 493946..494081 - |
1622927379.7911305-CDS-C-linearis_contig103:495096..495185 | 1622927379.7911305-CDS-C-linearis_contig103:495096..495185 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 495097..495185 - |
1690879665.7756944-CDS-C-linearis_contig103:495096..495185 | 1690879665.7756944-CDS-C-linearis_contig103:495096..495185 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig103 495097..495185 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.854.1 >prot_C-linearis_contig103.854.1 ID=prot_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=143bp
MRFGALAWVIVCCQAAVTLIGGDAFVISKSFMRRAAALSESRGDTIHAAT ADQLERIVEGPVVDLRGGKTTGSKKGSSGKGSKSSSSKGKSSKLSKSKKE PKKPSFLATIKAFFKSLIDPHFVLKLEAKKEKHNTVHGSGST* back to topmRNA from alignment at C-linearis_contig103:491801..495229- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig103.854.1 ID=mRNA_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3429bp|location=Sequence derived from alignment at C-linearis_contig103:491801..495229- (Chordaria linearis ClinC8C monoicous) CACACGCACCAACACCCAAGCGCCACCTCTCTGTCTGTAGCACCATGAGG
TTCGGCGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGTGACCCT
GATTGGCGGCGATGCCTTCGTGATTTCCAAAAGGTGAAGAGAGATGGGAC
GATACGATAGCTTCATGATCAACCTGTACGCCTGTACGCGAGGAAACGTT
GTTAGAGGGCAACACTGGCTTGCAGCTCTTGCTGGCAGCTGGATGCTCTT
GTACAGGATGATTGCTAGAATCACGTCCACGGGGTTGGCCTTGTCGATCA
TGCAGGCTTTGTCGTCGTTGACCTGATAGTTTGGCGGCCAGGAAGGTGTT
GATGCTCCAGGAGTGAAAAAAAAACCGCGTGTGCCACTTGTCATCACGTG
GGATGAGAATGAGGATGCCTGTGCCTCACGGTGGCCGGAGTCAATGTGGG
TGGGCTGCTACTGCCAGTTTTGCCGGGGGGTTCTAAGCAGTGTAGCGAGG
TGAAATGTACGGCAACCTGTGGGCCCTAAAGTCGAAGTGCAATCTCCATT
CAGCCGGCACGAAAGCGGCGTTGTTTCCTTGTCGACGCGCTGCTGCTACT
GTGAATATACAGACATAAGTACATGTGTTTGGGCTTCCCTCATATCTAGC
GCCATGGTGTGTGTGATGCTTCGTGTCTTCGCCGTACAATTTGTTGTGCT
AGCAACTGGTTGTGTTGCGACACCAAGCCGCGGCAGCCCCCAACAAGTGC
TCTTGTCTCTGTCGTCGGACGTGTGCACTCCTTTATATGGCTCTCTCTGG
TTTGTTCCGCAACCAAACTGGCCTCTGCCCTTGACGGGGCCTGTTGAAAT
CTAGCGGACGGCACTGCCGTGTTTCTTTTTCTTCCCAAAAGCAGCACACA
AGTTCTACGTAGCGTTCTTTGTCTCTCCCTGCCACCCGCTGTGTGCTGTG
GACTTTGGCCCATTGGTAAGTAGCCACCGACGGTACTCTGCTGTCAGCAT
TTTATAGCATGTACTGACTGGTCCCGAAGCTGATCTGGCAGCGATCGACC
TACTCCACCCTCATTCATTGCAAACCCGACCAACCTGAGACGAAACATCC
ATTCATATCTCCATCTTTGTGTCTACTACCTATGTATTTCGGTATCAGTT
TTATGCGACGGGCGGCCGCGTTGTCGGAGAGCCGAGGGGACACAATACAC
GCCGCCACGGCGGATCAGCTGGAGCGGATTGTGGAAGGGCCCGTCGTAGA
TCTCAGGGGGGGCAAGACAACAGGGTCAAAAAAGGTGGGCGAATTCTGGG
ATACATGGTTATGCATCGTCCACTGCTCGAGGTTACCTGTACCTGATATG
TAGTTCATGAAGTCATTAACGGTTCACCTCTTGTAAGGGATTGGGTTTGA
GCAACCCCGCCATCCCGCCTCGCGGTTTACATCATTCTTCTCTTTGCGCA
GGGGTCGTCTGGAAAGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCT
CCAAGCTGTCCAAGTCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCC
ACCATCAAGGCGTTCTTCAAGTCGCTCATCGACCCACAGTGAGTGCTTTA
GCAGTAGGATTCTCCTGTCTTTTGCAGTAGTCTAGTGTTTCCCCACCCAA
CGATGCGATTTTCCGTCAAGCGGCGATCGAATTGAGCGCTTTATTCTCAG
AGCTCCTCCAGCGATGCTTCGACCATGTGCGGTTTGTCAGGTCCTGTACG
TGGCTCCTGTGCTCTTCTTTCGCTACTCCTAGACATGAGCCGTCTACGCC
TGGCCTGTGAACAAAACGTTGGCAGGGGGGCTGCTGTAGGCACGTTAACT
CTCCCCTCACCTCCCCCCAGCGAAAATGGTCCAATGTCAGCAATCCGGCG
TTGTCTCGCTCCATCGGAGTATTGTTCGGCGCTGGGCGGTTTTTTGCTAT
TGTCGGCGGTTGTGTGTGTTTCCGGTGGCCTCGACGTCACATTTTGTTTC
TTTCAACCCAGGGACATGCAGCTGCGGGTGCGGTGTGTTTGGAGTGCTTC
TCCGGCAGTAGTCGCGGGCGATACGCTATTGTAGTGAGGGTGTGGACTGG
GTGGTGGAATACTCACGTGGTGCTTTTTTTGGACGCAGCTATGACCAATA
CATTCGAGAGTAGAAAAGTCGATCATGCTGTACAGGCACGACATATCAAG
GTATACCGGTATTGGGTACATGCATTTTTGGATTGTTATAGTCTATACAC
TTGTCGGATGCCACGAAGTGAAATAGTATTTCAATCTCATGATAACGAAG
CGAATGAGTGTCACACAATCTCCCCAACGCCCCGCCACCCTCCTGATCTC
TCTCCCCCCCCGCATCTCCTCAGCTTTGTCTTGAAGCTGGAAGCCAAGAA
GGAGAAGCACAACACGGTCCACGGGTCTGGCTCGACATGACGTCATTGGA
TTTTGGACCAAAATTACTCAGTTCAACAAAGTCGGTTTTTTGTGCCATGT
TGTGTGCTGGCCGTTTTTCATACTGCCAACGCACAACTTAGAATGGTTTG
CACGTAGCTTTGTTGTTTTTGCGAGGAAGGCTGGGGGAACAGTAATTGCG
CCGCCTGGATTGGGAAACAGGCATTTCACGAAGGGTATGGTGATGAATTT
TCTCTCCCACTGCTGTCCCCCCCAAGTTCTCGCGCCAAGTTTTGCTTTTT
TCGTGTAAGGGGAGGGGGCGGGCGGCGTTGAAGGCTTTTGGTGTCTCGAG
TTCACAACAGTCGCCGCGTTTTGGTGTTTCAATCCGTCCGAGCTTGCTTC
TGTGATGCGTGATGGATGTACAATAGAAATGTTGTGTGATGTTTGGTACA
CTACGGCGTTTCCCTTTTTGTGTTCGCCCTCGCCCAAAGAGCGGTTTTGT
CCATACCAGTCTGGGTCATTGCTGCTGTATTTTCGTCCAACAATGCTGTA
AGAACGCCGCTTCTTCTGTCTTCTTGCACCTTGCACGAAATAAGGGTGGG
TGAGGGCGGCCTCTGCTGTGGCCGGTTCCAACCTTCCGGTACCGTTGAAT
CCAGAGTGTTGTCTCCATGCCCAATATCCATGCCATGTGCAGCTATCATC
CCAGCGAAACCGCACCATCTGAGTGTGTGTGAAGCTCCACCACGGGTGGT
TGGCGCACATAATTATCCTCACCGCGCAACGTGAAATGGACGAAGATGTC
CTGATTGCATAGGATTTGCGTACTCGCAGTGGTGGAAAAATTGAGATGGT
TCAACTTGAAAGTTCCTTGTCATACTTTCTTGGCGAACTTCTTTTTCTCG
TGCCGCCAACGATGGGATGGGTGTGTGTGTGTGTGTGTGTGTGTTTTCGC
TTTTCGTAGCCTGCCTCCTCCTCTTCAAGACAAATGCTGTAGCTAATATT
GTAGGTTACCATCCGGGGTCACACAGGAG back to topCoding sequence (CDS) from alignment at C-linearis_contig103:491801..495229- >mRNA_C-linearis_contig103.854.1 ID=mRNA_C-linearis_contig103.854.1|Name=mRNA_C-linearis_contig103.854.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at C-linearis_contig103:491801..495229- (Chordaria linearis ClinC8C monoicous) ATGAGGTTCGGCGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGT GACCCTGATTGGCGGCGATGCCTTCGTGATTTCCAAAAGATGAGGTTCGG CGCTTTGGCGTGGGTGATCGTCTGCTGCCAAGCTGCGGTGACCCTGATTG GCGGCGATGCCTTCGTGATTTCCAAAAGTTTTATGCGACGGGCGGCCGCG TTGTCGGAGAGCCGAGGGGACACAATACACGCCGCCACGGCGGATCAGCT GGAGCGGATTGTGGAAGGGCCCGTCGTAGATCTCAGGGGGGGCAAGACAA CAGGGTCAAAAAAGTTTTATGCGACGGGCGGCCGCGTTGTCGGAGAGCCG AGGGGACACAATACACGCCGCCACGGCGGATCAGCTGGAGCGGATTGTGG AAGGGCCCGTCGTAGATCTCAGGGGGGGCAAGACAACAGGGTCAAAAAAG GGGTCGTCTGGAAAGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCTC CAAGCTGTCCAAGTCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCCA CCATCAAGGCGTTCTTCAAGTCGCTCATCGACCCACAGGGTCGTCTGGAA AGGGCAGTAAGTCGTCGTCGTCAAAAGGAAAGAGCTCCAAGCTGTCCAAG TCCAAGAAGGAGCCCAAGAAGCCGTCCTTCTTAGCCACCATCAAGGCGTT CTTCAAGTCGCTCATCGACCCACACTTTGTCTTGAAGCTGGAAGCCAAGA AGGAGAAGCACAACACGGTCCACGGGTCTGGCTCGACATGACTTTGTCTT GAAGCTGGAAGCCAAGAAGGAGAAGCACAACACGGTCCACGGGTCTGGCT CGACATGA back to top
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