mRNA_4024 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161020
Unique NamemRNA_4024
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A835Z9Y5_9STRA (UBC37-like protein, E2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y5_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.900e-93
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:    1 MSATAAARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEIVS 396
            MSATAAARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEIVS
Sbjct:    1 MSATAAARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEIVS 132
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: D7FYD3_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD3_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 2.900e-70
Identity = 98/130 (75.38%), Postives = 113/130 (86.92%), Query Frame = 1 
Query:    1 MSATAAARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            M+     RL KEL +L  +PPPG+CAWPV D +THLQAQ++GP+DTPY RG FLL++ +PD YPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSW PS+N+PTLLTTIR L+AHPNGDDGLMP+I
Sbjct:    1 MAGVGLVRLGKELKMLTDEPPPGVCAWPVDDCITHLQAQIQGPEDTPYERGTFLLELKIPDRYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWAPSMNVPTLLTTIRLLMAHPNGDDGLMPDI 130
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A067BXZ1_SAPPC (UBC core domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BXZ1_SAPPC)

HSP 1 Score: 196 bits (499), Expect = 1.630e-61
Identity = 88/123 (71.54%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   22 RLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            R+RKEL +L TDPP GICAW V D L  LQAQ++GP+ TPY  G+FLL+I VP+ YPFEPPKV F TPI+HPNID+GGRICLDTLKM+P GSW PS+N+ TLLTTIR L+A PN DDGLMPEI
Sbjct:    7 RMRKELEMLETDPPHGICAWSVDDKLDDLQAQIQGPEGTPYENGVFLLEIKVPERYPFEPPKVHFTTPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEI 129
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A1V9Z8S0_9STRA (Ubiquitin-conjugating enzyme E2T-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8S0_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.950e-61
Identity = 86/123 (69.92%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:   22 RLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            R+RKEL +L +DPP GICAW V D L  LQAQ++GP+ TPY  G+FLL+I +P+ YPFEPPKV F+TPI+HPNID+GGRICLDTLKM+P GSW PS+N+ TLLTTIR L+A PN DDGLMPEI
Sbjct:    7 RMRKELEMLESDPPHGICAWSVDDKLDDLQAQIQGPEGTPYENGVFLLEIKIPERYPFEPPKVHFITPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEI 129
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A6G0WGU0_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGU0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 6.040e-61
Identity = 85/123 (69.11%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   22 RLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            R+R+E+ +L  DPP GICAWP GD L  L+AQ++GP+ TPY +G+FLL I +P+ YPFEPPKV FVTPIYHPNID+ GRICLDTLKM+P GSW PS+N+ TLLTTIR L+A PN DDGLMPEI
Sbjct:    7 RMRREIEMLENDPPHGICAWPKGDKLDELEAQIQGPEGTPYEKGVFLLQITIPERYPFEPPKVHFVTPIYHPNIDNAGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEI 129
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A485LQ56_9STRA (Aste57867_24328 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQ56_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.420e-60
Identity = 84/123 (68.29%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   22 RLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            R+RKEL +L  DPP G+CAW   D L  L+AQ++GP+ TPY +G+FLL I +P+ YPFEPPKV+FVTPI+HPNID+ GRICLDTLKM+P GSW PS+N+PTLLTTIR L+A PN DDGLMPEI
Sbjct:    7 RMRKELEMLENDPPHGVCAWSKDDKLDELEAQIQGPEGTPYEKGVFLLSITIPERYPFEPPKVQFVTPIFHPNIDNAGRICLDTLKMQPKGSWMPSVNLPTLLTTIRLLMAEPNPDDGLMPEI 129
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BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A024TYV3_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TYV3_9STRA)

HSP 1 Score: 193 bits (491), Expect = 3.320e-60
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:   19 ARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            AR+RKE+ +L  DPP GICAWP  + L  L+AQ++GP+ TPY +GIFLL IL+P+ YPFEPPKV+F TPI+HPNID+ GRICLDTLKM+P GSW PS+N+ TLLTTIR L+A PN DDGLMPEI
Sbjct:    6 ARMRKEMEMLENDPPHGICAWPKDNKLDELEAQIQGPEGTPYEKGIFLLSILIPERYPFEPPKVQFTTPIFHPNIDNAGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEI 129
[Close]
BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A1V9YZW2_9STRA (Ubiquitin-conjugating enzyme E2 T-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZW2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.110e-59
Identity = 83/123 (67.48%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:   22 RLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            R+RKEL +L  DPP G+CAW + + L  LQAQ++GP+ TPY  G+FLL+I +P+ YPFEPPKV F+TPI+HPNID+GGRICLDTLKM+P GSW PS+N+ TLLTTIR L+A PN DDGLMPEI
Sbjct:    7 RMRKELEMLENDPPHGVCAWTIDEKLDDLQAQIQGPEGTPYENGVFLLEIKIPERYPFEPPKVHFLTPIFHPNIDNGGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMAEPNPDDGLMPEI 129
[Close]
BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: W4GEQ7_9STRA (UBC core domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEQ7_9STRA)

HSP 1 Score: 191 bits (485), Expect = 3.060e-59
Identity = 84/124 (67.74%), Postives = 102/124 (82.26%), Query Frame = 1 
Query:   19 ARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            AR+RKE+ +L  DPP GICAWP  + L  L+AQ++GP+ TPY +GIFLL I +P+ YPFEPPKV+FVTPI+HPNID+ GRICLDTLKM+P GSW PS+N+ TLLTTIR L+  PN DDGLMPEI
Sbjct:    6 ARMRKEMEMLENDPPHGICAWPKDNKLDELEAQIQGPEGTPYEKGIFLLSITIPERYPFEPPKVQFVTPIFHPNIDNAGRICLDTLKMQPKGSWMPSVNLSTLLTTIRLLMTDPNPDDGLMPEI 129
[Close]
BLAST of jgi.p|Trimin1|161020 vs. uniprot
Match: A0A833WVC3_PHYIN (Ubiquitin-conjugating enzyme n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WVC3_PHYIN)

HSP 1 Score: 191 bits (486), Expect = 3.530e-59
Identity = 85/130 (65.38%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:    1 MSATAAARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYARGIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSWTPSINIPTLLTTIRTLIAHPNGDDGLMPEI 390
            M+A    R+RKE+++L +DPP G+ AWP  D + HL+AQ+ GPD +PY +G+F L+I +P+ YPFEPPKVRFVTPIYHPNID  GRICLDTLKM+P GSW PS+NI TLLTTIR L+  PN DDGLMPEI
Sbjct:    1 MAAAMRGRMRKEIAMLESDPPFGVSAWPKDDQIDHLEAQILGPDGSPYEKGVFQLEIEIPERYPFEPPKVRFVTPIYHPNIDDAGRICLDTLKMQPKGSWLPSVNISTLLTTIRLLMGEPNADDGLMPEI 130
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161020 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9Y5_9STRA1.900e-93100.00UBC37-like protein, E2 n=1 Tax=Tribonema minus Tax... [more]
D7FYD3_ECTSI2.900e-7075.38UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A067BXZ1_SAPPC1.630e-6171.54UBC core domain-containing protein n=2 Tax=Saprole... [more]
A0A1V9Z8S0_9STRA3.950e-6169.92Ubiquitin-conjugating enzyme E2T-like n=1 Tax=Achl... [more]
A0A6G0WGU0_9STRA6.040e-6169.11UBC core domain-containing protein n=1 Tax=Aphanom... [more]
A0A485LQ56_9STRA2.420e-6068.29Aste57867_24328 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TYV3_9STRA3.320e-6068.55UBC core domain-containing protein n=1 Tax=Aphanom... [more]
A0A1V9YZW2_9STRA1.110e-5967.48Ubiquitin-conjugating enzyme E2 T-like n=1 Tax=Thr... [more]
W4GEQ7_9STRA3.060e-5967.74UBC core domain-containing protein n=2 Tax=Aphanom... [more]
A0A833WVC3_PHYIN3.530e-5965.38Ubiquitin-conjugating enzyme n=2 Tax=Phytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_15contigContig_15:1442287..1443083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161020|e_gw1.15.239.1
BRITEko00000,ko00001,ko01000,ko03400,ko04121
KEGG Pathwayko03460,map03460
KEGG koko:K13960
EC2.3.2.23
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0033554,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Descriptionprotein modification by small protein conjugation
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota
Evalue4.75e-71
Seed ortholog2880.D7FYD3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_003600.1
TranscriptId161342
TrackFilteredModels1
ProteinId161020
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161020gene_4024Tribonema minus UTEX_B_3156 geneContig_15 1442287..1443083 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4024_1exon_4024_1Tribonema minus UTEX_B_3156 exonContig_15 1442287..1442471 +
exon_4024_2exon_4024_2Tribonema minus UTEX_B_3156 exonContig_15 1442870..1443083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4024CDS_4024Tribonema minus UTEX_B_3156 CDSContig_15 1442287..1442471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161020Trimin1|161020|e_gw1.15.239.1Tribonema minus UTEX_B_3156 polypeptideContig_15 1442287..1443083 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4024 ID=mRNA_4024|Name=jgi.p|Trimin1|161020|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=399bp|location=Sequence derived from alignment at Contig_15:1442287..1443083+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCACTGCTGCTGCCCGCCTCCGCAAAGAGCTGAGCTTGCTGGC
CACCGATCCACCGCCAGGAATCTGCGCGTGGCCCGTCGGGGACAGCTTGA
CGCACCTGCAGGCTCAGGTGGAGGGCCCCGATGATACCCCCTATGCCAGA
GGTATCTTCCTGCTGGACATTCTGGTGCCTGACAGCTACCCCTTTGAGCC
GCCCAAGGTGCGCTTCGTCACGCCCATCTACCACCCCAACATCGACTCCG
GCGGCCGCATCTGCCTCGACACCCTCAAGATGCGGCCCGCGGGGTCCTGG
ACGCCATCCATCAACATACCTACCCTCCTCACGACGATCCGCACGCTCAT
CGCGCACCCCAACGGCGACGATGGGCTCATGCCGGAGATTGTGAGTTGA
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protein sequence of jgi.p|Trimin1|161020

>Trimin1|161020|e_gw1.15.239.1 ID=Trimin1|161020|e_gw1.15.239.1|Name=jgi.p|Trimin1|161020|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
MSATAAARLRKELSLLATDPPPGICAWPVGDSLTHLQAQVEGPDDTPYAR
GIFLLDILVPDSYPFEPPKVRFVTPIYHPNIDSGGRICLDTLKMRPAGSW
TPSINIPTLLTTIRTLIAHPNGDDGLMPEIVS*
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mRNA from alignment at Contig_15:1442287..1443083+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4024 ID=mRNA_4024|Name=jgi.p|Trimin1|161020|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=797bp|location=Sequence derived from alignment at Contig_15:1442287..1443083+ (Tribonema minus UTEX_B_3156 )
ATGAGCGCCACTGCTGCTGCCCGCCTCCGCAAAGAGCTGAGCTTGCTGGC
CACCGATCCACCGCCAGGAATCTGCGCGTGGCCCGTCGGGGACAGCTTGA
CGCACCTGCAGGCTCAGGTGGAGGGCCCCGATGATACCCCCTATGCCAGA
GGTATCTTCCTGCTGGACATTCTGGTGCCTGACAGGTACGCACAGCGGCC
TGCCGTCAAATTGCTGCCGTCTGCTTGTAATCTGCAGCACCCTCTATGCC
AGAGGTATTTCCTGTTGGTGCGACAGGTACTCGCAGCAGTTTGCTTGTAA
CATGCAGCACAAGTGTAGCTCAACTTCAGAGAAAGAGGCCATGCGCTTTC
TCAATGCGTGCGAGAGCTCCCCTATCACGCACCATGATGATCTCTACTCG
ACGACATTTGTGAACGTGTCTATTTAGACTGTCCACTTCTTGCAAGCTTT
CGTAGTCTGCTGCAACGCTGAATCCATGCATTGCCCATCCACAACGCCTC
AGGTGGCACATTGCAGCACATTACACTGCTGCAAAAATATACTGCTAAGC
ATTGCAGCGCTGCCCCCCCCACCCCCCCCGCAGCTACCCCTTTGAGCCGC
CCAAGGTGCGCTTCGTCACGCCCATCTACCACCCCAACATCGACTCCGGC
GGCCGCATCTGCCTCGACACCCTCAAGATGCGGCCCGCGGGGTCCTGGAC
GCCATCCATCAACATACCTACCCTCCTCACGACGATCCGCACGCTCATCG
CGCACCCCAACGGCGACGATGGGCTCATGCCGGAGATTGTGAGTTGA
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Coding sequence (CDS) from alignment at Contig_15:1442287..1443083+

>mRNA_4024 ID=mRNA_4024|Name=jgi.p|Trimin1|161020|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_15:1442287..1443083+ (Tribonema minus UTEX_B_3156 )
ATGAGCGCCACTGCTGCTGCCCGCCTCCGCAAAGAGCTGAGCTTGCTGGC
CACCGATCCACCGCCAGGAATCTGCGCGTGGCCCGTCGGGGACAGCTTGA
CGCACCTGCAGGCTCAGGTGGAGGGCCCCGATGATACCCCCTATGCCAGA
GGTATCTTCCTGCTGGACATTCTGGTGCCTGACAGCTACCCCTTTGAGCC
GCCCAAGGTGCGCTTCGTCACGCCCATCTACCACCCCAACATCGACTCCG
GCGGCCGCATCTGCCTCGACACCCTCAAGATGCGGCCCGCGGGGTCCTGG
ACGCCATCCATCAACATACCTACCCTCCTCACGACGATCCGCACGCTCAT
CGCGCACCCCAACGGCGACGATGGGCTCATGCCGGAGATTGTGAGTTGA
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