Trimin1|353071|estExt_Genemark1.C_Ctg_1430012 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353071
Unique NameTrimin1|353071|estExt_Genemark1.C_Ctg_1430012
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length98
Homology
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BLAST of jgi.p|Trimin1|353071 vs. uniprot
Match: A0A835ZA67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA67_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.270e-64
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 
Query:    1 MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ 97
            MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ
Sbjct:    1 MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ 97
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BLAST of jgi.p|Trimin1|353071 vs. uniprot
Match: A0A832CYS0_9BACT (Uncharacterized protein n=1 Tax=Ignavibacterium album TaxID=591197 RepID=A0A832CYS0_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.270e-6
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 0 
Query:    1 MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMME 89
            MA     + V++  K+   F D    ++R ENG    K+  S  +PN V ++ E+ +   A  F+ + +T+++MK++G++G PSI  +E
Sbjct:    1 MAHLIVHHKVENFAKWKPFFDDH--ASYRMENGSLGSKVFQSTNDPNDVFILLEWDNFINASRFIQSDQTKSVMKEAGVVGIPSIYFVE 87
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353071 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZA67_9STRA3.270e-64100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A832CYS0_9BACT1.270e-630.34Uncharacterized protein n=1 Tax=Ignavibacterium al... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.100coord: 4..91
e-value: 8.8E-6
score: 27.4
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 12..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_143contigContig_143:88769..90129 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353071mRNA_14314Tribonema minus UTEX_B_3156 mRNAContig_143 88769..90341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353071|estExt_Genemark1.C_Ctg_1430012 ID=Trimin1|353071|estExt_Genemark1.C_Ctg_1430012|Name=jgi.p|Trimin1|353071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVS
VIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel