mRNA_14314 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353071
Unique NamemRNA_14314
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|353071 vs. uniprot
Match: A0A835ZA67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA67_9STRA)

HSP 1 Score: 198 bits (503), Expect = 3.780e-63
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ 291
            MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ
Sbjct:    1 MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ 97
[Close]
BLAST of jgi.p|Trimin1|353071 vs. uniprot
Match: A0A832CYS0_9BACT (Uncharacterized protein n=1 Tax=Ignavibacterium album TaxID=591197 RepID=A0A832CYS0_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 5.480e-6
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:    1 MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMME 267
            MA     + V++  K+   F D    ++R ENG    K+  S  +PN V ++ E+ +   A  F+ + +T+++MK++G++G PSI  +E
Sbjct:    1 MAHLIVHHKVENFAKWKPFFDDH--ASYRMENGSLGSKVFQSTNDPNDVFILLEWDNFINASRFIQSDQTKSVMKEAGVVGIPSIYFVE 87
[Close]
BLAST of jgi.p|Trimin1|353071 vs. uniprot
Match: A0A7W6GA11_9HYPH (Quinol monooxygenase YgiN n=3 Tax=Rhizobium TaxID=379 RepID=A0A7W6GA11_9HYPH)

HSP 1 Score: 49.7 bits (117), Expect = 5.350e-5
Identity = 26/76 (34.21%), Postives = 41/76 (53.95%), Query Frame = 1 
Query:   70 EVVAWRK----------ENGIASWKILTSPGEPNQVSVIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMME 267
            +  AWRK          ENG+ S  +  S   PN V+V  E+ + +AAK F+   + R+ M+  GI+G PS+ ++E
Sbjct:   12 DYAAWRKVYDGLRSVQAENGVISEAVFQSADNPNDVTVTHEFATPEAAKAFMQLEELRSAMRTGGILGAPSVWLVE 87
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353071 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZA67_9STRA3.780e-63100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A832CYS0_9BACT5.480e-630.34Uncharacterized protein n=1 Tax=Ignavibacterium al... [more]
A0A7W6GA11_9HYPH5.350e-534.21Quinol monooxygenase YgiN n=3 Tax=Rhizobium TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_143contigContig_143:88769..90341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353071|estExt_Genemark1.C_Ctg_1430012
BRITEko00000,ko01000
KEGG koko:K21481
EC1.14.99.57
Preferred nameydbC
Descriptionheme oxygenase (decyclizing) activity
COG categoryS
Max annot lvl2|Bacteria
EggNOG OGsCOG2329@1|root,COG2329@2|Bacteria
Evalue5.49e-05
Seed ortholog42256.RradSPS_0216
Hectar predicted targeting categoryother localisation
TranscriptId353393
TrackFilteredModels1
ProteinId353071
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353071gene_14314Tribonema minus UTEX_B_3156 geneContig_143 88769..90341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14314_1exon_14314_1Tribonema minus UTEX_B_3156 exonContig_143 88769..88912 +
exon_14314_2exon_14314_2Tribonema minus UTEX_B_3156 exonContig_143 89980..90341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14314CDS_14314Tribonema minus UTEX_B_3156 CDSContig_143 88769..88912 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14314UTR3_14314Tribonema minus UTEX_B_3156 three_prime_UTRContig_143 90130..90341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353071Trimin1|353071|estExt_Genemark1.C_Ctg_1430012Tribonema minus UTEX_B_3156 polypeptideContig_143 88769..90129 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14314 ID=mRNA_14314|Name=jgi.p|Trimin1|353071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=506bp|location=Sequence derived from alignment at Contig_143:88769..90341+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTGGCGTTTGGGCAGTACACTGTGGATAGCGTCGAAAAGTATGT
TGCTGCCTTCACGGATCCCGAGGTAGTCGCCTGGCGGAAGGAGAACGGCA
TTGCTAGTTGGAAGATCTTGACTTCCCCCGGCGAGCCCAATCAGGTCAGC
GTCATTGCGGAGTACCCCAGCATCCAAGCGGCCAAGGACTTTCTGGCCAA
CCCCAAGACTCGTACCATCATGAAGGACTCAGGAATCATGGGCCCTCCCT
CCATCACCATGATGGAGATCCACAAGTCCGGCAGTCACCAGTAGAAAGCA
CACATGTTTGATGGGGGGCGGTACACATCAGCAGCTGCTAGCAGGCGCCG
CTGCTACGAAATTTCAGCGTGCGTGTTCCCTCGTGCGGTCTGGTGGTTCA
GACCCGATACCGTAGAACTAGAGAGCGGTGTGCTTCCTGAATATGTCCTT
CCTGAACACGCGATGCGTCGATTGCAGTTGTGGTGTGTCGCCAGCCCAGC
AGTGGC
back to top

protein sequence of jgi.p|Trimin1|353071

>Trimin1|353071|estExt_Genemark1.C_Ctg_1430012 ID=Trimin1|353071|estExt_Genemark1.C_Ctg_1430012|Name=jgi.p|Trimin1|353071|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=98bp
MAVAFGQYTVDSVEKYVAAFTDPEVVAWRKENGIASWKILTSPGEPNQVS
VIAEYPSIQAAKDFLANPKTRTIMKDSGIMGPPSITMMEIHKSGSHQ*
back to top

mRNA from alignment at Contig_143:88769..90341+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14314 ID=mRNA_14314|Name=jgi.p|Trimin1|353071|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1573bp|location=Sequence derived from alignment at Contig_143:88769..90341+ (Tribonema minus UTEX_B_3156 )
ATGGCGGTGGCGTTTGGGCAGTACACTGTGGATAGCGTCGAAAAGTATGT
TGCTGCCTTCACGGATCCCGAGGTAGTCGCCTGGCGGAAGGAGAACGGCA
TTGCTAGTTGGAAGATCTTGACTTCCCCCGGCGAGCCCAATCAGGTATGC
ATAGCGCAGTGGCTAGTCATGCTGGTCGTGTGATTCAATTGCTCTCAATC
TTTGCCGCGGATCTCTCACTTATTTTATTGACTACCTTGCGCGAAAACTC
TAGCTTTGCGGATGCGGCTTGAGATCGAGCTAGCGTCAAGCACATTAATC
ACACTGATGCACTTCTCTCTGCATGAGCAATACAAAGCACGCTTGCATGA
ATAATGCTATACACTTCAAAGTGTGCGGCGACGTCCTGGGTGAATCGACA
CGTACAAAAAGGAAGCCTCCGTATGCCCAGTGCGATATGGGCAGGGCTTG
GCAAGCTACACTATGATAATGATGAATGATCGAGGTTGTGTGTCGTCTTC
CAGCAAGGTCAGCTTGCTTGCTGTCTGCACATCTCTTCCAAATCCGTCAA
CGTCACTGACATCTCTAGCTGGCAGCCATAGAGGCTGGAAGGCAATGGAT
GGCAGATGTTTTACGACTGTCCTGCTGCTTCACCTATGTGTGCTAGAGAA
TGTAATTGCCCCACACGCGTGCACTGGGCACCACTATATAATCACACCCA
TGGCGTGATGTTTCTTTCAGCTTGAGGCTGATCACTCTGCGTTCTCGAGG
TGAACGTGACATGCCAGCTGAAATATGAACACGAGATGGTGCTGCGAGGT
TCGGCGAGCACATGTGGCGGTGCAGGCTGCGCGACCACAGTTTGCATATA
TCTTGAAGTACTTATGTCATCTACTTACTTGCAAGCCACGGTGCCATGCA
TTTCATAAGTCTGCTGCTCCTGACGGCTGTGCGCATTGGCAAGCTCATGG
CAACAGGGGCGGCAGCACGCGCGCATGTTTAACTTGAAGTTAATCACCAC
CATGATTTTGTGCCACATGCAAGGAGCCCATCATCGTATCACCTCAAACT
GTTTCAATCAAGCAGCCACGACGCGTATAGCTAAATCATGGCGGCACTGT
TGCTGCTCACCACTTGACGCGCAGCGTAACGGTTGCACCGCACCTCACAC
CGGCCGCTTTGATGCACAGCGACATCTCATACCTGTAACTGCCAAATGCC
GTCATGCACAGGTCAGCGTCATTGCGGAGTACCCCAGCATCCAAGCGGCC
AAGGACTTTCTGGCCAACCCCAAGACTCGTACCATCATGAAGGACTCAGG
AATCATGGGCCCTCCCTCCATCACCATGATGGAGATCCACAAGTCCGGCA
GTCACCAGTAGAAAGCACACATGTTTGATGGGGGGCGGTACACATCAGCA
GCTGCTAGCAGGCGCCGCTGCTACGAAATTTCAGCGTGCGTGTTCCCTCG
TGCGGTCTGGTGGTTCAGACCCGATACCGTAGAACTAGAGAGCGGTGTGC
TTCCTGAATATGTCCTTCCTGAACACGCGATGCGTCGATTGCAGTTGTGG
TGTGTCGCCAGCCCAGCAGTGGC
back to top

Coding sequence (CDS) from alignment at Contig_143:88769..90341+

>mRNA_14314 ID=mRNA_14314|Name=jgi.p|Trimin1|353071|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=294bp|location=Sequence derived from alignment at Contig_143:88769..90341+ (Tribonema minus UTEX_B_3156 )
ATGGCGGTGGCGTTTGGGCAGTACACTGTGGATAGCGTCGAAAAGTATGT
TGCTGCCTTCACGGATCCCGAGGTAGTCGCCTGGCGGAAGGAGAACGGCA
TTGCTAGTTGGAAGATCTTGACTTCCCCCGGCGAGCCCAATCAGGTCAGC
GTCATTGCGGAGTACCCCAGCATCCAAGCGGCCAAGGACTTTCTGGCCAA
CCCCAAGACTCGTACCATCATGAAGGACTCAGGAATCATGGGCCCTCCCT
CCATCACCATGATGGAGATCCACAAGTCCGGCAGTCACCAGTAG
back to top