mRNA_14303 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176882
Unique NamemRNA_14303
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176882 vs. uniprot
Match: A0A835ZDL7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL7_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.220e-96
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 
Query:    1 MQLVLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVYRKQLALRSTDSSMQASYAGGRSACSIMVSPKSEIANVDIVVLAQELLTSGFFITGLNEGVVQDLKIQLSTITAFPNNTDITVDYMLVSSCIHANH 435
            MQLVLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVYRKQLALRSTDSSMQASYAGGRSACSIMVSPKSEIANVDIVVLAQELLTSGFFITGLNEGVVQDLKIQLSTITAFPNNTDITVDYMLVSSCIHANH
Sbjct:    1 MQLVLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVYRKQLALRSTDSSMQASYAGGRSACSIMVSPKSEIANVDIVVLAQELLTSGFFITGLNEGVVQDLKIQLSTITAFPNNTDITVDYMLVSSCIHANH 145
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BLAST of jgi.p|Trimin1|176882 vs. uniprot
Match: D8LLX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.640e-30
Identity = 58/135 (42.96%), Postives = 91/135 (67.41%), Query Frame = 1 
Query:   10 VLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVYRKQLALRSTDSSMQASYAGGRSACSIMVSPKSEIANVDIVVLAQELLTSGFFITGLNEGVVQDLKIQLSTITAFPNNTDITVDYMLVS 414
            V+FGA++A G+YD+   V+LLH+PAENT++TVF FRLTED  GV+V R++L LR++D+ M+ S +    A  I   P  E   V ++  A+ LLT+GF++T +    + D++++LS   A+  N  +TV+Y LV+
Sbjct:   18 VIFGASYARGSYDDDRSVTLLHYPAENTEETVFVFRLTEDASGVDVLREELTLRTSDAGMETSLSESAPAEWITTLPILESNGVSVMASAENLLTNGFYVTDIQPAKLADMRLKLSETRAYQKNAGLTVEYQLVT 152
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BLAST of jgi.p|Trimin1|176882 vs. uniprot
Match: A0A4D9CV01_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV01_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.260e-13
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 1 
Query:   10 VLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVYRKQLALRSTDSSMQASYAGGRSACSIMVSP-------KSEIANVDIVVLAQELLTSGFFITGLNEGVVQDLKIQLSTITAFPNNTDITVDYML 408
            V+F ATFA G +D+ + + LLH PAE TD  VF F +T D  G++V+R+Q  +R++          G  +  +   P        S+      VV A  L+ +GF+IT +     +D +++L    +FP N DIT +Y+L
Sbjct:  114 VIFSATFARGAWDDSSSLLLLHEPAEATDHVVFTFNITSDGSGIDVFREQYGVRTSSPDYAMPVELGALSLRVGTLPIVIDHHGSSDDEEGSYVVDASGLIENGFYITDVTGA--EDARLRLDLSRSFPENLDITAEYLL 251
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BLAST of jgi.p|Trimin1|176882 vs. uniprot
Match: A0A6H5J8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.760e-13
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   10 VLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVYRKQL 162
            V+FGA++A G+YD+   V+LLH+PAENT++TVF FRLTED  GV+V R++L
Sbjct:   18 VIFGASYARGSYDDDRSVTLLHYPAENTEETVFVFRLTEDAAGVDVLREEL 68
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176882 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZDL7_9STRA2.220e-96100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLX6_ECTSI1.640e-3042.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CV01_9STRA3.260e-1333.57Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A6H5J8D9_9PHAE3.760e-1360.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_143contigContig_143:18491..19751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176882|e_gw1.143.94.1
Hectar predicted targeting categoryother localisation
TranscriptId177204
TrackFilteredModels1
ProteinId176882
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176882gene_14303Tribonema minus UTEX_B_3156 geneContig_143 18491..19751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176882Trimin1|176882|e_gw1.143.94.1Tribonema minus UTEX_B_3156 polypeptideContig_143 18491..19751 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14303_2exon_14303_2Tribonema minus UTEX_B_3156 exonContig_143 18491..18689 -
exon_14303_1exon_14303_1Tribonema minus UTEX_B_3156 exonContig_143 19513..19751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14303CDS_14303Tribonema minus UTEX_B_3156 CDSContig_143 19513..19751 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14303 ID=mRNA_14303|Name=jgi.p|Trimin1|176882|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=438bp|location=Sequence derived from alignment at Contig_143:18491..19751- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGGTGCTGTTTGGCGCCACCTTCGCCACTGGCACGTACGACAA
TGGCAACTTCGTCAGCCTGTTGCACTTCCCTGCGGAGAATACGGACCAGA
CCGTTTTCTACTTCAGGTTGACAGAGGACCTGGGGGGGGTGAACGTCTAC
CGCAAGCAGCTGGCACTCAGGTCCACAGACAGCTCCATGCAGGCAAGCTA
TGCTGGTGGTCGTAGTGCATGTTCAATCATGGTTAGCCCCAAAAGCGAGA
TTGCCAATGTGGACATAGTGGTGCTGGCGCAGGAGCTGCTAACGAGTGGG
TTTTTCATCACGGGGCTGAACGAGGGGGTGGTGCAGGATCTCAAGATCCA
GCTATCGACTATCACAGCATTTCCCAACAATACGGACATCACAGTGGACT
ACATGCTGGTGAGTTCGTGCATTCATGCCAACCATTAG
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protein sequence of jgi.p|Trimin1|176882

>Trimin1|176882|e_gw1.143.94.1 ID=Trimin1|176882|e_gw1.143.94.1|Name=jgi.p|Trimin1|176882|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=146bp
MQLVLFGATFATGTYDNGNFVSLLHFPAENTDQTVFYFRLTEDLGGVNVY
RKQLALRSTDSSMQASYAGGRSACSIMVSPKSEIANVDIVVLAQELLTSG
FFITGLNEGVVQDLKIQLSTITAFPNNTDITVDYMLVSSCIHANH*
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mRNA from alignment at Contig_143:18491..19751-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14303 ID=mRNA_14303|Name=jgi.p|Trimin1|176882|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1261bp|location=Sequence derived from alignment at Contig_143:18491..19751- (Tribonema minus UTEX_B_3156 )
ATGCAGCTGGTGCTGTTTGGCGCCACCTTCGCCACTGGCACGTACGACAA
TGGCAACTTCGTCAGCCTGTTGCACTTCCCTGCGGAGAATACGGACCAGA
CCGTTTTCTACTTCAGGTTGACAGAGGACCTGGGGGGGGTGAACGTCTAC
CGCAAGCAGCTGGCACTCAGGTCCACAGACAGCTCCATGCAGGCAAGCTA
TGCTGGTGGTCGTAGTGCATGTTCAATCATGGTTAGCCCGTGCGCACACA
CCACACACAGTACCACTTTGGTTTCACTTTCGTGACGTTCGCAGACAGAT
GATTCTGCACATGTCATTGACCTCTCTTACCCGCGATGATACTAGCTTCT
CCACCGAGCACGGCACGCAGCAGTAAATTATTTGAAAGTCCTTGTGGTTT
GCTCATTACGTTCCCAGTCGATCATTGCCAATTTGTGGCATGCTGTAGCA
CAAGACCTGTAGCAGGAGCGGGGAAGGGCGCCAGTTGATTTACAAATGAC
ATACACCGAGTAGTCATAGCCCAACACAGCACATTGCCAAAGTGACAGCC
CCGATGATCATCATGTTTCGCTGCCAATTTAGTACTTGGAAGTATCTGAT
TTCAGATTCTCAAACTTCTGAGCTGTTTGATGTCAATCTCATGGTAATGC
CTGCCATGGCAACATGGCTGGCTAGCCCTCACTTCACACATGATCATCAT
GGGTGTGTGAACCGTTGCCGCTGAGTTTCAGGTTTACACGTGTGCCCGGG
CTACGCTGCTTCAGAACTCATGCATCAAGCTGCCAATTGCAGCTCTGCTG
CTGGTTTATCTGCACATAAGCATGAAAGCACTGCTTGGCAGCGTGCGCGC
CACCAATCTTCTTTGGAAGGTTGGTGCAACTTCAACAACGCTTTCAGGCT
CACACCATGTTGCACTGAGTTACACACTCACTTGGGTTATGTATGATATA
CGTCTATGCCATTGCTGTGCGCGCAGGCATCCACTGCGGGCAGCGCCCCG
GATGAGTGGATCATGACCATGCCAGTAGTGGCCTTGGAGGACGAAAGCGG
AGAGTTCAGCAGCAAAAGCGAGATTGCCAATGTGGACATAGTGGTGCTGG
CGCAGGAGCTGCTAACGAGTGGGTTTTTCATCACGGGGCTGAACGAGGGG
GTGGTGCAGGATCTCAAGATCCAGCTATCGACTATCACAGCATTTCCCAA
CAATACGGACATCACAGTGGACTACATGCTGGTGAGTTCGTGCATTCATG
CCAACCATTAG
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Coding sequence (CDS) from alignment at Contig_143:18491..19751-

>mRNA_14303 ID=mRNA_14303|Name=jgi.p|Trimin1|176882|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=438bp|location=Sequence derived from alignment at Contig_143:18491..19751- (Tribonema minus UTEX_B_3156 )
ATGCAGCTGGTGCTGTTTGGCGCCACCTTCGCCACTGGCACGTACGACAA
TGGCAACTTCGTCAGCCTGTTGCACTTCCCTGCGGAGAATACGGACCAGA
CCGTTTTCTACTTCAGGTTGACAGAGGACCTGGGGGGGGTGAACGTCTAC
CGCAAGCAGCTGGCACTCAGGTCCACAGACAGCTCCATGCAGGCAAGCTA
TGCTGGTGGTCGTAGTGCATGTTCAATCATGGTTAGCCCCAAAAGCGAGA
TTGCCAATGTGGACATAGTGGTGCTGGCGCAGGAGCTGCTAACGAGTGGG
TTTTTCATCACGGGGCTGAACGAGGGGGTGGTGCAGGATCTCAAGATCCA
GCTATCGACTATCACAGCATTTCCCAACAATACGGACATCACAGTGGACT
ACATGCTGGTGAGTTCGTGCATTCATGCCAACCATTAG
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