mRNA_1109 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|346415
Unique Name	mRNA_1109
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|346415 vs. uniprot
Match: A0A835ZL99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL99_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 2.840e-182
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 3

Query:   21 MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLRPAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARAARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALECARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAHALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEADAKLHTMLLELCSVLKEGGGED 833
            MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLRPAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARAARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALECARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAHALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEADAKLHTMLLELCSVLKEGGGED
Sbjct:    1 MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLRPAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARAARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALECARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAHALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEADAKLHTMLLELCSVLKEGGGED 271

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346415 vs. uniprot

BLAST of jgi.p|Trimin1|346415 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZL99_9STRA	2.840e-182	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:1255684..1258651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|346415\|estExt_Genemark1.C_Ctg_10199
Hectar predicted targeting category	mitochondrion
TranscriptId	346737
Track	FilteredModels1
ProteinId	346415

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346415	gene_1109	Tribonema minus UTEX_B_3156	gene	Contig_1 1255684..1258651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346415	Trimin1\|346415\|estExt_Genemark1.C_Ctg_10199	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 1255704..1258502 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_1109_1	exon_1109_1	Tribonema minus UTEX_B_3156	exon	Contig_1 1255684..1255953 +
exon_1109_2	exon_1109_2	Tribonema minus UTEX_B_3156	exon	Contig_1 1256517..1256811 +
exon_1109_3	exon_1109_3	Tribonema minus UTEX_B_3156	exon	Contig_1 1257388..1257553 +
exon_1109_4	exon_1109_4	Tribonema minus UTEX_B_3156	exon	Contig_1 1258398..1258651 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_1109	UTR5_1109	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_1 1255684..1255703 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_1109	CDS_1109	Tribonema minus UTEX_B_3156	CDS	Contig_1 1255704..1255953 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_1109	UTR3_1109	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_1 1258503..1258651 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:1255684..1258651+
coding sequence from alignment at Contig_1:1255684..1258651+

spliced messenger RNA

>mRNA_1109 ID=mRNA_1109|Name=jgi.p|Trimin1|346415|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=985bp|location=Sequence derived from alignment at Contig_1:1255684..1258651+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGATCAAGCGCGAGATCAACATGGCTTTGCGCAGAAGCGTCCTGGTTGCA
TGGCGTGCTCGGGCCTGCGTTAGCAGCAGCTGCAGGTGCGCAGCAGGAGC
TGCGCGCGGGCCAGATACAAAAATCGCATCTCGGATGACGCAGGCGAGAG
CCGGATTCCACAGGCTGCGGCCTGCAATGCAGCAGAGCGGAGGCGCCGGG
AGTGCCGATGGGCCTCCAGATGACATCCCCAGACAACAAGCGCACATGCT
ATATCAGCTGGAAGCATTAGAGAACACCAAGTGGCGCGACGCGCTGCGCA
TGCTCGACGACGCGCGCGCGGCGCGCCTCCCCCTGACGCCCCCCATGTAC
GCGGCGGCGCTCGCCACGCTCGCCGCGTCGCGCCAGTGGTCGCGCGGCCT
CGAGCTCGCGCGCACGATGCTGGCGGAGGCGCACGCGCCAACCGAGGGAG
GTCGTGCGGACGCGCTGGAGTGCGCGCGTGGCCACGCGCGCGGGCTGGCG
CCGCGCGAGCTCGCGCCGTTCTTGGCGGAGCTGCGCGAGATGGGGCTCGC
GCCGGACGCCGAGACATACGGCGCGGCGGCGGCGACGGCGGCGTCGCGCA
ATGCGTGGGCGGAGGCGCACGCGCTGCTGCAGGAGATGACGCGGCGCGGC
CTCGTGGTCGACGGCAGGAGCGCGGAGGACCTGCTGGACGGGCTGGTCTT
CGCGGCGGCGACGGCGGAGCGCGCGGAGGAGGCTCGTGAACTGTGGCTGG
AGCAGACACCAGAGGCAGATGCCAAGCTGCACACAATGCTGCTGGAATTG
TGTAGTGTCCTCAAGGAGGGCGGCGGGGAGGACTAGGCACGTTTAAGTTA
GGGTTAAGGTTAGGGTTAGAGCGCCTGCGCTTTTCGTGTGCCGATGCAGG
TCTAGGAGCTGCAGAGGGAAACTGTACACAGTAGGCGGAGGTTCGCCTGT
GCCTTGGTGCATATTGCACCGTTGCAGTAGCGTAA

protein sequence of jgi.p|Trimin1|346415

>Trimin1|346415|estExt_Genemark1.C_Ctg_10199 ID=Trimin1|346415|estExt_Genemark1.C_Ctg_10199|Name=jgi.p|Trimin1|346415|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLR
PAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARA
ARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALE
CARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAH
ALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEAD
AKLHTMLLELCSVLKEGGGED*

mRNA from alignment at Contig_1:1255684..1258651+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1109 ID=mRNA_1109|Name=jgi.p|Trimin1|346415|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2968bp|location=Sequence derived from alignment at Contig_1:1255684..1258651+ (Tribonema minus UTEX_B_3156 )
GGATCAAGCGCGAGATCAACATGGCTTTGCGCAGAAGCGTCCTGGTTGCA
TGGCGTGCTCGGGCCTGCGTTAGCAGCAGCTGCAGGTGCGCAGCAGGAGC
TGCGCGCGGGCCAGATACAAAAATCGCATCTCGGATGACGCAGGCGAGAG
CCGGATTCCACAGGCTGCGGCCTGCAATGCAGCAGAGCGGAGGCGCCGGG
AGTGCCGATGGGCCTCCAGATGACATCCCCAGACAACAAGCGCACATGCT
ATATCAGCTGGAAGCATTAGGTGAGCTTGAACTTCATGACGAGGAACAGA
AGATCCACGATCAGGAAAACGTGCTGAAATGCGGCAGTCTACACAATTGA
TGCGGTTAGCTCATCCTCGATACAGCGCTGGCGAGCAGCAAATCTGCTTG
TCACGAACGTGACGATAGCGGCAACGCTTGTATTGACGCACATCCCGGCT
CCGGGGATCGTCGTGTGATGCAACTCGCCGTCATCGACAGCCCCTGCTCA
TTGCCTTCGTCGAAGCAGCAGGTCACCCTTACAGCTGGAAGATATCATTG
GCCTATCTCGCCCATCTCTGAGTTTCACAGCCGGGCCTCCACTGTGCCTA
CAGCCCCTGCAGACAGAATTTGCTCCTGTTGCACTCATCACACACGTTAG
CCTCGACGAGCTCACGGGCGCGCAGCTGCTCACTGCGCATCAAGCAGCGC
ACACACAGCCCTTCGCCAATAGCACTCACGTCCCAGCAAACTGCAGCACG
CCTGCCAGGCCAACAACCCTCCTCACAAACTCACATCAAATCCCCTTACC
ACCCCCCCCCCTTCCCCGCACACACACCCGCAGAGAACACCAAGTGGCGC
GACGCGCTGCGCATGCTCGACGACGCGCGCGCGGCGCGCCTCCCCCTGAC
GCCCCCCATGTACGCGGCGGCGCTCGCCACGCTCGCCGCGTCGCGCCAGT
GGTCGCGCGGCCTCGAGCTCGCGCGCACGATGCTGGCGGAGGCGCACGCG
CCAACCGAGGGAGGTCGTGCGGACGCGCTGGAGTGCGCGCGTGGCCACGC
GCGCGGGCTGGCGCCGCGCGAGCTCGCGCCGTTCTTGGCGGAGCTGCGCG
AGATGGGGCTCGCGCCGGACGCCGAGACGTGAGCGTCACTGCTTTTTGTA
TAAGTGAAGTTGCACACTTGAATTTGTCTAGGAGGGCAAGCGCGCACACG
CGCTGGGGTGCGCGCACGGCTACGCGCGTACTCTGGCGCCGGTCGAGCTC
GCGCCGTTCATGGCGGAGTTGCGGGAGATGGGGCTCGCGCCGGACGTGGA
GACGTGACCGCCACCCGCGGTTTTTTTGCAGTTGAAGTTGCATAATTGAA
GTTGTATATGCGACGCGACGCGTCACATTGCGCGCGCCTGCCGCCTGAGG
GCCGTCGCCTCTGGGGGCGGGGCTTGCCCCGGATGCCAAGACGTGAGCAT
CGCCGGCGGTGCTTGTCCGCGGCAGCCTGCCTGGGAGCGCGGCACACGCG
CTCGCCTTGTTCTTGAAGTGCGCATCGCTTCGGAAATTGCGCTTGACCGT
GCGCATCGCTTGCGCACCTTTGTGTTCCTGTGTGCTGATGCTGCCCGCGG
CGGCAGCGCGCAGCGCGCGGACGTGTAACCCCTCACGCATGCTCGAACTT
CACCTTCAACATGCGCATGGCGTCTCGCTCACCTGCAACATGTGCCACGA
GCAGATACGGCGCGGCGGCGGCGACGGCGGCGTCGCGCAATGCGTGGGCG
GAGGCGCACGCGCTGCTGCAGGAGATGACGCGGCGCGGCCTCGTGGTCGA
CGGCAGGAGCGCGGAGGACCTGCTGGACGGGCTGGTCTTCGCGGCGGCGA
CGGCGGAGCGCGCGGAGGAGGTGCGCACTGTACTGCATATGTACTCCACT
GTACTGTCTGTGAAGTCACGAAACGAAGGGCACCATGCAGGCGGCGACGG
CGGAGCGCACTGCGTGTGTATTCACAGCGAGTGAGCTGTACTTCACCAAG
GAGTGAACTGCGTGTGTACTCACAGGGAGTGAACTGTACTTCGCAAGGAG
TGAACTGTGTTGTGCGTGGATTCGTGAGGCGAAGGGCGCTATGCAGGCGG
CGACGGCGGAGCGCGCGGAGGAGGTGCGCTGTACCGCTTGTGTACTCACA
GGGAGTGAACCTTCGTGAATTCACACAGCGAAGGGCACTGCGCTGGCGGC
GACAGCGGCGCGTGCAAAGGATGTACACGCTGTGCTGTACCTGAACTCGT
CCGGAGTGGACTGTTCTGTGCATGTGTACTGCCGAAGCGAAGGGGCCCAT
ACGTGTACGCTTCGAGTGTGATCTGTAATACGTGCGTGCTTCTGAACAGA
GGCACCATCTACAGGTGCATGAAGCCAAAAGCGTCAACAGAGGCGGCGGT
GTATGGTGCACTCTGTCGCGGGGCGGCAACTGCGCCGCTTCAGCACAATG
GCCGTTGAAGTACCCGGTTCAACGAATAATCTGAGCACCAAAACAATCTT
TACAGCTAAGCTCATGCAAGGTTGCAATTGAAGGCATGCGCTGTTGCGTC
CGCCGCTGCCTTTCATAAAGCTCGCATGCTCGCATGCTGCAGTGTCACGA
GGCGGCCGCCGATACTGCTGCTTAAGGTGCCCTTCGCGATTGCGATCAAA
GTCGCCGTTGCAGCCTCAAAGCCAACTTTCGCAACTGCCATTGCCCCTCC
CTGCTCCTGCTCAGGCTCGTGAACTGTGGCTGGAGCAGACACCAGAGGCA
GATGCCAAGCTGCACACAATGCTGCTGGAATTGTGTAGTGTCCTCAAGGA
GGGCGGCGGGGAGGACTAGGCACGTTTAAGTTAGGGTTAAGGTTAGGGTT
AGAGCGCCTGCGCTTTTCGTGTGCCGATGCAGGTCTAGGAGCTGCAGAGG
GAAACTGTACACAGTAGGCGGAGGTTCGCCTGTGCCTTGGTGCATATTGC
ACCGTTGCAGTAGCGTAA

Coding sequence (CDS) from alignment at Contig_1:1255684..1258651+

>mRNA_1109 ID=mRNA_1109|Name=jgi.p|Trimin1|346415|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_1:1255684..1258651+ (Tribonema minus UTEX_B_3156 )
ATGGCTTTGCGCAGAAGCGTCCTGGTTGCATGGCGTGCTCGGGCCTGCGT
TAGCAGCAGCTGCAGGTGCGCAGCAGGAGCTGCGCGCGGGCCAGATACAA
AAATCGCATCTCGGATGACGCAGGCGAGAGCCGGATTCCACAGGCTGCGG
CCTGCAATGCAGCAGAGCGGAGGCGCCGGGAGTGCCGATGGGCCTCCAGA
TGACATCCCCAGACAACAAGCGCACATGCTATATCAGCTGGAAGCATTAG
AGAACACCAAGTGGCGCGACGCGCTGCGCATGCTCGACGACGCGCGCGCG
GCGCGCCTCCCCCTGACGCCCCCCATGTACGCGGCGGCGCTCGCCACGCT
CGCCGCGTCGCGCCAGTGGTCGCGCGGCCTCGAGCTCGCGCGCACGATGC
TGGCGGAGGCGCACGCGCCAACCGAGGGAGGTCGTGCGGACGCGCTGGAG
TGCGCGCGTGGCCACGCGCGCGGGCTGGCGCCGCGCGAGCTCGCGCCGTT
CTTGGCGGAGCTGCGCGAGATGGGGCTCGCGCCGGACGCCGAGACATACG
GCGCGGCGGCGGCGACGGCGGCGTCGCGCAATGCGTGGGCGGAGGCGCAC
GCGCTGCTGCAGGAGATGACGCGGCGCGGCCTCGTGGTCGACGGCAGGAG
CGCGGAGGACCTGCTGGACGGGCTGGTCTTCGCGGCGGCGACGGCGGAGC
GCGCGGAGGAGGCTCGTGAACTGTGGCTGGAGCAGACACCAGAGGCAGAT
GCCAAGCTGCACACAATGCTGCTGGAATTGTGTAGTGTCCTCAAGGAGGG
CGGCGGGGAGGACTAG