Trimin1|346415|estExt_Genemark1.C_Ctg_10199 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346415
Unique NameTrimin1|346415|estExt_Genemark1.C_Ctg_10199
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length272
Homology
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BLAST of jgi.p|Trimin1|346415 vs. uniprot
Match: A0A835ZL99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL99_9STRA)

HSP 1 Score: 511 bits (1317), Expect = 9.080e-183
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0 
Query:    1 MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLRPAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARAARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALECARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAHALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEADAKLHTMLLELCSVLKEGGGED 271
            MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLRPAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARAARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALECARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAHALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEADAKLHTMLLELCSVLKEGGGED
Sbjct:    1 MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLRPAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARAARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALECARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAHALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEADAKLHTMLLELCSVLKEGGGED 271
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346415 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZL99_9STRA9.080e-183100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 81..269
e-value: 8.0E-16
score: 60.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1255704..1258502 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346415mRNA_1109Tribonema minus UTEX_B_3156 mRNAContig_1 1255684..1258651 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346415|estExt_Genemark1.C_Ctg_10199 ID=Trimin1|346415|estExt_Genemark1.C_Ctg_10199|Name=jgi.p|Trimin1|346415|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MALRRSVLVAWRARACVSSSCRCAAGAARGPDTKIASRMTQARAGFHRLR
PAMQQSGGAGSADGPPDDIPRQQAHMLYQLEALENTKWRDALRMLDDARA
ARLPLTPPMYAAALATLAASRQWSRGLELARTMLAEAHAPTEGGRADALE
CARGHARGLAPRELAPFLAELREMGLAPDAETYGAAAATAASRNAWAEAH
ALLQEMTRRGLVVDGRSAEDLLDGLVFAAATAERAEEARELWLEQTPEAD
AKLHTMLLELCSVLKEGGGED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf