Trimin1|352892|estExt_Genemark1.C_Ctg_1350028 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352892
Unique NameTrimin1|352892|estExt_Genemark1.C_Ctg_1350028
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length392
Homology
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A836CLS8_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS8_9STRA)

HSP 1 Score: 773 bits (1996), Expect = 3.230e-282
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 0
Query:    1 MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKKVKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE 391
            MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKKVKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE
Sbjct:    1 MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKKVKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE 391          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A6H5JPH2_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPH2_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 9.290e-90
Identity = 163/339 (48.08%), Postives = 215/339 (63.42%), Query Frame = 0
Query:    5 GSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFV--KPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRW 341
            G+   F+V +   V   P   P ++  GE   +PML+  +++A + D FPS+S+A+KAVRR+ELLLN  E    ++VNPGD +    RT+P     LF   KP  +LPI++EDD+IAV++KP G+ VHG   E+   P  ++      S+R A+ + L P+ + D  L RP H HRLD  TGGL++CAKTRPAL  +  AF++R V KRY ALV G LEGSG I TPL GK   T Y V     V+SL +  ITTVDLWP TGR HQLR+HL+S+  PILGD+RY P    E   +  G++L A+ L F HPIT E +N +I EP KF KWREKE +RW
Sbjct:   62 GTRRGFQVQKEYAV---PDEAPTNLPEGEDEGYPMLIYQFMHAQYRDDFPSVSSARKAVRRKELLLNGTEVRNDSKVNPGDTVTMQKRTQPG----LFPQGKPSCTLPILWEDDFIAVIIKPAGVAVHGGTGEDDPGPGGRR------SVRQALPYMLTPTKSKDRPLHRPLHCHRLDKATGGLLICAKTRPALSAIGDAFEQRLVSKRYVALVAGELEGSGAIVTPLDGKACVTNYRVRGP-PVRSLKTSVITTVDLWPVTGRLHQLRRHLSSIGCPILGDRRYTPD---EVPFQEGGMYLQAVGLTFPHPITREEMNFSIPEPAKFEKWREKEHQRW 383          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S3UCU8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCU8_9CHLO)

HSP 1 Score: 205 bits (521), Expect = 1.020e-59
Identity = 120/292 (41.10%), Postives = 170/292 (58.22%), Query Frame = 0
Query:   41 LPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLS--LPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKF 330
            +P  L AA PD F +++AA+KA RR E+L+         RV  GD ++ + R+  A       +P  +  + + YEDD++AV+VKP G+ V G              RG   +L+  + + L+P A     L RP H HRLD PTGGL++ AKT+ +++ + I F ER+V KRYRA+V G LEG GTI  PL G+ ++T Y  + + RV +   G  T VD+WP TGR+HQ+R+HLAS+  PI+GD  Y P  + ++     GLFLWA E+ F HPITG  + L  E P  F
Sbjct:   29 MPQALLAAMPDRFETMTAARKACRRCEILVEGETTRCGDRVKIGDTIRWIRRSSNAPRPMCRPEPPETKLVEVAYEDDHLAVLVKPRGLAVQG--------------RGKT-TLQQLLPYLLQP-AHVQGALHRPHHVHRLDMPTGGLLIAAKTQASIREMGILFHERQVQKRYRAVVIGCLEGEGTIDRPLRGQEAQTTYRAVKQQRVGN-GHGWRTIVDVWPATGRYHQIRRHLASIGHPIVGDDEYCPRQRHDS---SNGLFLWAAEVVFPHPITGRTVALVSEPPPCF 300          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S2RLL2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLL2_9STRA)

HSP 1 Score: 196 bits (498), Expect = 2.140e-56
Identity = 113/235 (48.09%), Postives = 146/235 (62.13%), Query Frame = 0
Query:  111 IVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLS 345
            +VYEDD +AVVVKP GMP HG +  E A            SL+TAI + L+P+ +TD  LRRP+H HRLD  T GL++ AKTRPAL+ L+  F ERR+ K+YRA+V G L G G I  P+ G  + T +       V+SL  G +T V+L P TGR HQLRKHLA L  PI+GD RY  A   E L RG G+ L A+ L F HPI+G+   + + EP KF K+ ++E  RW  L+
Sbjct:   41 VVYEDDVMAVVVKPQGMPTHGNRGGEDAGATASLGA----SLKTAILYSLQPTPSTDEPLRRPEHCHRLDAATFGLVLVAKTRPALRRLTADFAERRIRKQYRAVVHGKLIGEGVIEEPVDGTAAVTHWE--SARTVRSLRWGWLTQVELRPLTGRRHQLRKHLAFLGHPIVGDARY--AKDPEQLHRGIGMLLAAVALDFTHPISGKPQQIEVSEPPKFGKFLDREDERWHSLA 267          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S4C3Z6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3Z6_CHRCT)

HSP 1 Score: 191 bits (486), Expect = 7.170e-54
Identity = 130/312 (41.67%), Postives = 178/312 (57.05%), Query Frame = 0
Query:   27 ADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTK-PATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHL---EGSG--TISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTK 332
            A+VR G+T   P+ LP  +    PD FPS SAAK+A RR  +L+N         V     L+ +AR   PA          + L IVYEDD +AVV KP G+PV G+  +EG             ++RT +A+ L+PS   +  L RPQH HRLD PT GL+V AK+RPA+  L  AF +R+V K YRA+V G +   EG+    + TP+SG+ + TE+ V+   R  S   G ++ V+L P TGR HQLR+H+ASL  PI+GD +Y P    E      GL L A+ L   HP+TG+ L+L+++EP  F K
Sbjct:   59 AEVRIGDT---PLALPALVQRTWPDHFPSSSAAKRACRRSLVLVNGEIGACGNHVGSNAVLELIARASAPAPGQGRRSTGSVPLRIVYEDDDMAVVYKPAGIPVAGS--QEGRL-----------NVRTMLAYSLQPSQNAEP-LWRPQHVHRLDAPTSGLLVVAKSRPAISALHEAFAQRQVRKTYRAVVAGQIAPHEGTDLRVVETPVSGQSARTEWRVVR--RFASASYGELSLVELHPHTGRTHQLRRHMASLGHPIVGDDKYWPRHMPEHT--EHGLCLSAVGLALPHPLTGKVLSLSVDEPASFRK 349          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A2N1RPP9_9SPIR (RNA pseudouridine synthase n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-5 TaxID=2013837 RepID=A0A2N1RPP9_9SPIR)

HSP 1 Score: 189 bits (480), Expect = 1.130e-53
Identity = 120/292 (41.10%), Postives = 167/292 (57.19%), Query Frame = 0
Query:   55 SISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRY-HPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLS 345
            S +  KKA++R + L++   A     + PG  +     T       L V  H+ +P+VYEDD+IAVV KP G+ V G + +               ++  A+   LK S   DA L RP   HRLD  T GL++ AKTR A  NL   F+ R++ KRYRA+V G +   G I + + G+ SET+Y  +    VQS+ +G +T VDL+P TGR HQLR+H+A    PI+GDK Y  P D    L RG+GLFL A+EL  DHP  G  LNL I++PEKF  + ++E+RRW +L+
Sbjct:   42 SRNGIKKAIKRGDFLIDGVSAETGTWIKPGQII-----TLNEQEIELPVY-HMVIPVVYEDDHIAVVNKPAGITVSGNRFK---------------TVENALPFNLKKSMEDDA-LGRPGPVHRLDSQTSGLLLIAKTRRARINLGHQFESRKIKKRYRAVVKGEIRNPGRIISDIDGRSSETDYIPVKS--VQSIKNGYVTLVDLFPGTGRTHQLRRHMAESGHPIIGDKLYGEPGD----LFRGKGLFLAAVELTLDHPCDGVYLNLRIDDPEKFGSFMDREERRWYRLN 305          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S4BPC4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPC4_CHRCT)

HSP 1 Score: 190 bits (483), Expect = 3.390e-53
Identity = 131/310 (42.26%), Postives = 175/310 (56.45%), Query Frame = 0
Query:   41 LPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAA-TDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEG-SGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLAS-LNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEA---LNLTIEEPEKFTKWREKEQRRWEKL 344
            LP  L   + + FPS+S A+K+ RR  +L+N  E    + V PGD ++   R     T     KP  S+ +++E D +AVV KPPG+  H        PP     R    S+RTA+ + + P A+ T   L RP   HRLD  T GL++CAKT+PAL +LS AF +RRV KRY A+V G++EG SG I  PL GK + T + V    R +SL  G +TT+ L+P TGR HQLR+H A  LN PILGD +Y      E +  G G+FL A+ L F HP   E    L++ I  P KF     +EQ RWE+L
Sbjct:   93 LPQALTLLNAELFPSMSRARKSCRRGSVLINGKEGRCISTVCPGDVIELQTRVNAGYTPR--GKPPFSVEVIWECDQLAVVNKPPGVVSH-------PPPGGAAGRQ---SMRTAVQYAVAPPASGTPGALYRPHLVHRLDKGTSGLLLCAKTKPALVSLSSAFAQRRVSKRYVAVVVGYVEGESGKIDAPLDGKEAVTRWEVA--ARHRSLRLGHLTTLHLYPTTGRTHQLRRHCAEELNSPILGDSKYG----GECV--GSGMFLAAVSLTFQHPARPETDPPLSVEIPWPSKFVAVCSREQERWERL 382          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A6U4II29_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4II29_9STRA)

HSP 1 Score: 191 bits (484), Expect = 4.040e-53
Identity = 123/321 (38.32%), Postives = 177/321 (55.14%), Query Frame = 0
Query:   53 FPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKK--ARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGH---LEGSG----------------TISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLAS-LNVPILGDKRYHPADQAET----LLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSV 347
            FPS +AAK+ VRR+++ +N      +  V  GD ++RL R                + ++YED+++A + KP G+PVH     +G+   + K  A  P  S+RT +   L P+    A LRRP H HRLD  T G+++ AKT+ A++ LS AF +R V KRYRA++ G    L G G                 IS P+ G+ S TE+  ++  R  SL  G +TTVD+WP+TGR HQLR+H A  L  PILGD +Y      +     +  G GLFL A+EL+  HP++G+ L + + EP KFTK RE+E RR+  L+  
Sbjct:   80 FPSATAAKRLVRRRQIRVNGNVVGTTTNVAAGDFVQRLERLGAGLRPLQRSDVPDGMTVLYEDEHLAAIYKPAGIPVHSGGGGDGSSGEEAKTTAYAPKKSVRTFLPSLLAPTEEVGA-LRRPIHVHRLDAATSGVLLAAKTQTAVRELSRAFADRNVRKRYRAVLIGVPAVLGGDGGFNATAAAAVDSSEPHVISAPVDGRASVTEWRAVNITR--SLRFGYLTTVDMWPRTGRKHQLRRHAAEVLGCPILGDTKYERIPHGDEGNFGISHGMGLFLCAVELRLAHPLSGQDLCIAVGEPPKFTKTREREHRRFLDLADA 397          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A3M1YYZ1_9BACT (RluA family pseudouridine synthase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1YYZ1_9BACT)

HSP 1 Score: 186 bits (473), Expect = 5.900e-53
Identity = 113/279 (40.50%), Postives = 159/279 (56.99%), Query Frame = 0
Query:   52 TFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKF 330
            + PS    KKA++R ++ ++   A     V PG +++ +A   P          H++LP+VYED+++AVV KP G+ V G K                 +L+ A+   L PS   DA L++    HRLD PT GL++ AKT  A  NL  AF+ + V KRYRA+  G +  SG + +P+ GKP+ T +  +  +R  SL +G ++TVDL+P+TGR HQLR HLA    PILGDK Y P      +L+G+GLFL A+EL F HP +GE L L I  P KF
Sbjct:   28 SIPSRKGLKKAIKRGQVWVDGAPAETGRWVVPGQKIELIAPDLPPPRIY-----HMALPVVYEDEHLAVVNKPGGISVSGNKFR---------------TLQNALPAHLTPSTRPDA-LKKMLPVHRLDAPTCGLLLVAKTISARINLGQAFENQTVKKRYRAVTIGEMPASGVLDSPIDGKPARTRFERVSAVR--SLKNGWLSTVDLFPETGRTHQLRIHLAQAGYPILGDKLYGPEG---LILKGKGLFLCAVELAFLHPFSGEMLRLAIAPPPKF 280          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A6C2UQI1_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pontiella sulfatireligans TaxID=2750658 RepID=A0A6C2UQI1_9BACT)

HSP 1 Score: 184 bits (467), Expect = 7.010e-52
Identity = 122/303 (40.26%), Postives = 170/303 (56.11%), Query Frame = 0
Query:   44 YLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKR--LARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKL 344
            Y   A P + PS   A KAV+R E+L++ G       V  G  L+   L +  P T         L L +V+EDD++A++ KPPG+ V G K +               ++  A+   L  S+A DA L  P+  HRLD  T GL++ AKT  A   L   F+ER+VHKRY A+V G +E SG I  P+ G P+ + Y V +   V SL SG +T VDL+P TGR HQLR H+AS+N PI+GD++Y  A     +L+G+GLFL ++EL+F HP + E L ++I+ P KF     +EQ RW K 
Sbjct:   21 YAQTAFP-SIPSRKGAAKAVKRGEILMDGGVGQSGDWVQTGQLLELVDLQQRVPKTY-------RLPLEVVFEDDHLAIINKPPGIEVSGNKFK---------------TVENALCGSLASSSAADA-LPWPRPVHRLDYSTSGLLLAAKTAGAQVFLGRQFEERQVHKRYCAVVAGRMEASGEIDEPVDGLPALSTYVVHET--VPSLRSGHLTLVDLFPSTGRTHQLRIHMASINHPIVGDQKYGTAGN---VLKGKGLFLASIELRFVHPASQEKLAISIDAPPKFDSLLRREQARWAKF 294          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLS8_9STRA3.230e-282100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A6H5JPH2_9PHAE9.290e-9048.08PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3UCU8_9CHLO1.020e-5941.10Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S2RLL2_9STRA2.140e-5648.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4C3Z6_CHRCT7.170e-5441.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2N1RPP9_9SPIR1.130e-5341.10RNA pseudouridine synthase n=1 Tax=Spirochaetae ba... [more]
A0A7S4BPC4_CHRCT3.390e-5342.26Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6U4II29_9STRA4.040e-5338.32Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A3M1YYZ1_9BACT5.900e-5340.50RluA family pseudouridine synthase (Fragment) n=1 ... [more]
A0A6C2UQI1_9BACT7.010e-5240.26Ribosomal large subunit pseudouridine synthase D n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 118..276
e-value: 7.2E-23
score: 81.4
IPR006145Pseudouridine synthase, RsuA/RluA-likeCDDcd02869PseudoU_synth_RluA_likecoord: 118..311
e-value: 6.28074E-46
score: 154.032
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 102..326
e-value: 5.5E-49
score: 168.7
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 108..332
e-value: 6.8E-33
score: 110.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 355..391
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 374..391
NoneNo IPR availablePANTHERPTHR21600:SF34MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE RPUSD4coord: 58..342
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 58..342
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 41..121
e-value: 0.0044392
score: 33.7622
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 106..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_135contigContig_135:279629..281861 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352892mRNA_14968Tribonema minus UTEX_B_3156 mRNAContig_135 279610..281921 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352892|estExt_Genemark1.C_Ctg_1350028 ID=Trimin1|352892|estExt_Genemark1.C_Ctg_1350028|Name=jgi.p|Trimin1|352892|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=392bp
MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHP
DTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAA
LFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVP
SLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLS
IAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSL
FSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGE
GLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKK
VKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR002942S4_RNA-bd
IPR020103PsdUridine_synth_cat_dom_sf