mRNA_14968 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352892
Unique NamemRNA_14968
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A836CLS8_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS8_9STRA)

HSP 1 Score: 776 bits (2004), Expect = 5.550e-283
Identity = 391/391 (100.00%), Postives = 391/391 (100.00%), Query Frame = 1
Query:   61 MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKKVKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE 1233
            MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKKVKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE
Sbjct:    1 MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKKVKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE 391          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A6H5JPH2_9PHAE (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPH2_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 2.180e-89
Identity = 163/339 (48.08%), Postives = 215/339 (63.42%), Query Frame = 1
Query:   73 GSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFV--KPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRW 1083
            G+   F+V +   V   P   P ++  GE   +PML+  +++A + D FPS+S+A+KAVRR+ELLLN  E    ++VNPGD +    RT+P     LF   KP  +LPI++EDD+IAV++KP G+ VHG   E+   P  ++      S+R A+ + L P+ + D  L RP H HRLD  TGGL++CAKTRPAL  +  AF++R V KRY ALV G LEGSG I TPL GK   T Y V     V+SL +  ITTVDLWP TGR HQLR+HL+S+  PILGD+RY P    E   +  G++L A+ L F HPIT E +N +I EP KF KWREKE +RW
Sbjct:   62 GTRRGFQVQKEYAV---PDEAPTNLPEGEDEGYPMLIYQFMHAQYRDDFPSVSSARKAVRRKELLLNGTEVRNDSKVNPGDTVTMQKRTQPG----LFPQGKPSCTLPILWEDDFIAVIIKPAGVAVHGGTGEDDPGPGGRR------SVRQALPYMLTPTKSKDRPLHRPLHCHRLDKATGGLLICAKTRPALSAIGDAFEQRLVSKRYVALVAGELEGSGAIVTPLDGKACVTNYRVRGP-PVRSLKTSVITTVDLWPVTGRLHQLRRHLSSIGCPILGDRRYTPD---EVPFQEGGMYLQAVGLTFPHPITREEMNFSIPEPAKFEKWREKEHQRW 383          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S3UCU8_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UCU8_9CHLO)

HSP 1 Score: 205 bits (521), Expect = 2.110e-59
Identity = 120/292 (41.10%), Postives = 170/292 (58.22%), Query Frame = 1
Query:  181 LPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLS--LPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKF 1050
            +P  L AA PD F +++AA+KA RR E+L+         RV  GD ++ + R+  A       +P  +  + + YEDD++AV+VKP G+ V G              RG   +L+  + + L+P A     L RP H HRLD PTGGL++ AKT+ +++ + I F ER+V KRYRA+V G LEG GTI  PL G+ ++T Y  + + RV +   G  T VD+WP TGR+HQ+R+HLAS+  PI+GD  Y P  + ++     GLFLWA E+ F HPITG  + L  E P  F
Sbjct:   29 MPQALLAAMPDRFETMTAARKACRRCEILVEGETTRCGDRVKIGDTIRWIRRSSNAPRPMCRPEPPETKLVEVAYEDDHLAVLVKPRGLAVQG--------------RGKT-TLQQLLPYLLQP-AHVQGALHRPHHVHRLDMPTGGLLIAAKTQASIREMGILFHERQVQKRYRAVVIGCLEGEGTIDRPLRGQEAQTTYRAVKQQRVGN-GHGWRTIVDVWPATGRYHQIRRHLASIGHPIVGDDEYCPRQRHDS---SNGLFLWAAEVVFPHPITGRTVALVSEPPPCF 300          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S2RLL2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLL2_9STRA)

HSP 1 Score: 196 bits (498), Expect = 4.340e-56
Identity = 113/235 (48.09%), Postives = 146/235 (62.13%), Query Frame = 1
Query:  391 IVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLS 1095
            +VYEDD +AVVVKP GMP HG +  E A            SL+TAI + L+P+ +TD  LRRP+H HRLD  T GL++ AKTRPAL+ L+  F ERR+ K+YRA+V G L G G I  P+ G  + T +       V+SL  G +T V+L P TGR HQLRKHLA L  PI+GD RY  A   E L RG G+ L A+ L F HPI+G+   + + EP KF K+ ++E  RW  L+
Sbjct:   41 VVYEDDVMAVVVKPQGMPTHGNRGGEDAGATASLGA----SLKTAILYSLQPTPSTDEPLRRPEHCHRLDAATFGLVLVAKTRPALRRLTADFAERRIRKQYRAVVHGKLIGEGVIEEPVDGTAAVTHWE--SARTVRSLRWGWLTQVELRPLTGRRHQLRKHLAFLGHPIVGDARY--AKDPEQLHRGIGMLLAAVALDFTHPISGKPQQIEVSEPPKFGKFLDREDERWHSLA 267          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S4C3Z6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C3Z6_CHRCT)

HSP 1 Score: 191 bits (486), Expect = 1.440e-53
Identity = 130/312 (41.67%), Postives = 178/312 (57.05%), Query Frame = 1
Query:  139 ADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTK-PATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHL---EGSG--TISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTK 1056
            A+VR G+T   P+ LP  +    PD FPS SAAK+A RR  +L+N         V     L+ +AR   PA          + L IVYEDD +AVV KP G+PV G+  +EG             ++RT +A+ L+PS   +  L RPQH HRLD PT GL+V AK+RPA+  L  AF +R+V K YRA+V G +   EG+    + TP+SG+ + TE+ V+   R  S   G ++ V+L P TGR HQLR+H+ASL  PI+GD +Y P    E      GL L A+ L   HP+TG+ L+L+++EP  F K
Sbjct:   59 AEVRIGDT---PLALPALVQRTWPDHFPSSSAAKRACRRSLVLVNGEIGACGNHVGSNAVLELIARASAPAPGQGRRSTGSVPLRIVYEDDDMAVVYKPAGIPVAGS--QEGRL-----------NVRTMLAYSLQPSQNAEP-LWRPQHVHRLDAPTSGLLVVAKSRPAISALHEAFAQRQVRKTYRAVVAGQIAPHEGTDLRVVETPVSGQSARTEWRVVR--RFASASYGELSLVELHPHTGRTHQLRRHMASLGHPIVGDDKYWPRHMPEHT--EHGLCLSAVGLALPHPLTGKVLSLSVDEPASFRK 349          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A2N1RPP9_9SPIR (RNA pseudouridine synthase n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-5 TaxID=2013837 RepID=A0A2N1RPP9_9SPIR)

HSP 1 Score: 189 bits (480), Expect = 2.250e-53
Identity = 120/292 (41.10%), Postives = 167/292 (57.19%), Query Frame = 1
Query:  223 SISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRY-HPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLS 1095
            S +  KKA++R + L++   A     + PG  +     T       L V  H+ +P+VYEDD+IAVV KP G+ V G + +               ++  A+   LK S   DA L RP   HRLD  T GL++ AKTR A  NL   F+ R++ KRYRA+V G +   G I + + G+ SET+Y  +    VQS+ +G +T VDL+P TGR HQLR+H+A    PI+GDK Y  P D    L RG+GLFL A+EL  DHP  G  LNL I++PEKF  + ++E+RRW +L+
Sbjct:   42 SRNGIKKAIKRGDFLIDGVSAETGTWIKPGQII-----TLNEQEIELPVY-HMVIPVVYEDDHIAVVNKPAGITVSGNRFK---------------TVENALPFNLKKSMEDDA-LGRPGPVHRLDSQTSGLLLIAKTRRARINLGHQFESRKIKKRYRAVVKGEIRNPGRIISDIDGRSSETDYIPVKS--VQSIKNGYVTLVDLFPGTGRTHQLRRHMAESGHPIIGDKLYGEPGD----LFRGKGLFLAAVELTLDHPCDGVYLNLRIDDPEKFGSFMDREERRWYRLN 305          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A7S4BPC4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BPC4_CHRCT)

HSP 1 Score: 190 bits (483), Expect = 6.760e-53
Identity = 131/310 (42.26%), Postives = 175/310 (56.45%), Query Frame = 1
Query:  181 LPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAA-TDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEG-SGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLAS-LNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEA---LNLTIEEPEKFTKWREKEQRRWEKL 1092
            LP  L   + + FPS+S A+K+ RR  +L+N  E    + V PGD ++   R     T     KP  S+ +++E D +AVV KPPG+  H        PP     R    S+RTA+ + + P A+ T   L RP   HRLD  T GL++CAKT+PAL +LS AF +RRV KRY A+V G++EG SG I  PL GK + T + V    R +SL  G +TT+ L+P TGR HQLR+H A  LN PILGD +Y      E +  G G+FL A+ L F HP   E    L++ I  P KF     +EQ RWE+L
Sbjct:   93 LPQALTLLNAELFPSMSRARKSCRRGSVLINGKEGRCISTVCPGDVIELQTRVNAGYTPR--GKPPFSVEVIWECDQLAVVNKPPGVVSH-------PPPGGAAGRQ---SMRTAVQYAVAPPASGTPGALYRPHLVHRLDKGTSGLLLCAKTKPALVSLSSAFAQRRVSKRYVAVVVGYVEGESGKIDAPLDGKEAVTRWEVA--ARHRSLRLGHLTTLHLYPTTGRTHQLRRHCAEELNSPILGDSKYG----GECV--GSGMFLAAVSLTFQHPARPETDPPLSVEIPWPSKFVAVCSREQERWERL 382          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A6U4II29_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4II29_9STRA)

HSP 1 Score: 191 bits (484), Expect = 8.070e-53
Identity = 123/321 (38.32%), Postives = 177/321 (55.14%), Query Frame = 1
Query:  217 FPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKK--ARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGH---LEGSG----------------TISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLAS-LNVPILGDKRYHPADQAET----LLRGEGLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSV 1101
            FPS +AAK+ VRR+++ +N      +  V  GD ++RL R                + ++YED+++A + KP G+PVH     +G+   + K  A  P  S+RT +   L P+    A LRRP H HRLD  T G+++ AKT+ A++ LS AF +R V KRYRA++ G    L G G                 IS P+ G+ S TE+  ++  R  SL  G +TTVD+WP+TGR HQLR+H A  L  PILGD +Y      +     +  G GLFL A+EL+  HP++G+ L + + EP KFTK RE+E RR+  L+  
Sbjct:   80 FPSATAAKRLVRRRQIRVNGNVVGTTTNVAAGDFVQRLERLGAGLRPLQRSDVPDGMTVLYEDEHLAAIYKPAGIPVHSGGGGDGSSGEEAKTTAYAPKKSVRTFLPSLLAPTEEVGA-LRRPIHVHRLDAATSGVLLAAKTQTAVRELSRAFADRNVRKRYRAVLIGVPAVLGGDGGFNATAAAAVDSSEPHVISAPVDGRASVTEWRAVNITR--SLRFGYLTTVDMWPRTGRKHQLRRHAAEVLGCPILGDTKYERIPHGDEGNFGISHGMGLFLCAVELRLAHPLSGQDLCIAVGEPPKFTKTREREHRRFLDLADA 397          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A3M1YYZ1_9BACT (RluA family pseudouridine synthase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1YYZ1_9BACT)

HSP 1 Score: 186 bits (473), Expect = 1.170e-52
Identity = 113/279 (40.50%), Postives = 159/279 (56.99%), Query Frame = 1
Query:  214 TFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVPSLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPITGEALNLTIEEPEKF 1050
            + PS    KKA++R ++ ++   A     V PG +++ +A   P          H++LP+VYED+++AVV KP G+ V G K                 +L+ A+   L PS   DA L++    HRLD PT GL++ AKT  A  NL  AF+ + V KRYRA+  G +  SG + +P+ GKP+ T +  +  +R  SL +G ++TVDL+P+TGR HQLR HLA    PILGDK Y P      +L+G+GLFL A+EL F HP +GE L L I  P KF
Sbjct:   28 SIPSRKGLKKAIKRGQVWVDGAPAETGRWVVPGQKIELIAPDLPPPRIY-----HMALPVVYEDEHLAVVNKPGGISVSGNKFR---------------TLQNALPAHLTPSTRPDA-LKKMLPVHRLDAPTCGLLLVAKTISARINLGQAFENQTVKKRYRAVTIGEMPASGVLDSPIDGKPARTRFERVSAVR--SLKNGWLSTVDLFPETGRTHQLRIHLAQAGYPILGDKLYGPEG---LILKGKGLFLCAVELAFLHPFSGEMLRLAIAPPPKF 280          
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Match: A0A6V2ZI66_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2ZI66_EMIHU)

HSP 1 Score: 187 bits (475), Expect = 9.850e-52
Identity = 141/375 (37.60%), Postives = 192/375 (51.20%), Query Frame = 1
Query:   10 ASTAHALILQAPQV--LDDMRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHPDTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAALFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVP-----SLRTAIAHCLKPS-AATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLSIAFQERRVHKRYRALVTGHLEGS-GTISTPLSGKPSETEYSVLDELRVQSLFSGTITTVDLWPKTGRHHQLRKHLAS-LNVPILGDKRYHPADQAETLLRGEGLFLWALELKFDHPIT---GEALNLTIEEPEKFTKWREKEQRRWEKLS 1095
            AS   +  L AP V  L +  ++G    FE V           VP  V  G        LP  + A  P  FP+ S A+KA+RR  +L+N  E    +    GD L   AR  P  +     KP   + + YED+ IAVV+KP G+  H        PP D + R         S+R+AI + L+P  A T   L RP   HRLD PT GL++CAKTR AL  +S AF++R VHK+YRA+V G +EG  G + +P+  + S T + VL   R   L  G +T + L+P TGR HQLR+H A  L  PI+GD +Y   D       G GL+L A+EL+  HP        L++ +E P KF +    EQ+RWE+L+
Sbjct:   33 ASALASSELAAPAVRALYNGTRLGHAVTFEAV-----------VPPSVAPGTP------LPEVVMATDPGRFPTASRARKALRRGCVLINGAEVRCISTAGGGDLLALQARVSPGFSPR--GKPPFPVEVAYEDESIAVVLKPAGVCTH--------PPADGENRRRAGASHGNSMRSAIHYALQPPPAGTPGALYRPHICHRLDRPTSGLLLCAKTRHALLGVSSAFRDRVVHKQYRAVVCGIVEGDEGEVDSPIMRRESRTRWRVLRRGRSLRLGGGHLTELALFPLTGRTHQLRRHCAEVLGAPIVGDSKYGGGDA------GSGLYLSAVELRLAHPDRPPGAPPLHVAVEAPAKFGRLLAHEQQRWERLA 374          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352892 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLS8_9STRA5.550e-283100.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A6H5JPH2_9PHAE2.180e-8948.08PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A7S3UCU8_9CHLO2.110e-5941.10Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S2RLL2_9STRA4.340e-5648.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4C3Z6_CHRCT1.440e-5341.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2N1RPP9_9SPIR2.250e-5341.10RNA pseudouridine synthase n=1 Tax=Spirochaetae ba... [more]
A0A7S4BPC4_CHRCT6.760e-5342.26Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6U4II29_9STRA8.070e-5338.32Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A3M1YYZ1_9BACT1.170e-5240.50RluA family pseudouridine synthase (Fragment) n=1 ... [more]
A0A6V2ZI66_EMIHU9.850e-5237.60Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_135contigContig_135:279610..281921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352892|estExt_Genemark1.C_Ctg_1350028
Descriptionpseudouridine synthase activity
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Evalue3.32e-90
Seed ortholog2880.D8LBV5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-20_003420.1
TranscriptId353214
TrackFilteredModels1
ProteinId352892
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352892gene_14968Tribonema minus UTEX_B_3156 geneContig_135 279610..281921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352892Trimin1|352892|estExt_Genemark1.C_Ctg_1350028Tribonema minus UTEX_B_3156 polypeptideContig_135 279629..281861 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14968_3exon_14968_3Tribonema minus UTEX_B_3156 exonContig_135 279610..280271 -
exon_14968_2exon_14968_2Tribonema minus UTEX_B_3156 exonContig_135 280692..281023 -
exon_14968_1exon_14968_1Tribonema minus UTEX_B_3156 exonContig_135 281661..281921 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14968UTR3_14968Tribonema minus UTEX_B_3156 three_prime_UTRContig_135 279610..279628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14968CDS_14968Tribonema minus UTEX_B_3156 CDSContig_135 281661..281861 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14968UTR5_14968Tribonema minus UTEX_B_3156 five_prime_UTRContig_135 281862..281921 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14968 ID=mRNA_14968|Name=jgi.p|Trimin1|352892|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1255bp|location=Sequence derived from alignment at Contig_135:279610..281921- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGCTGGCCAGCACCGCACACGCCTTGATTCTTCAGGCTCCTCAAGT
GCTGGACGACATGAGAAAGATAGGCAGCACCGCCGACTTCGAGGTGGTAC
AGAGTATGGAGGTCGCTGAGCGGCCACCACATGTGCCAGCGGACGTCAGG
CGCGGCGAGACGGGGGAGTGGCCGATGCTGCTGCCAATGTACCTTTACGC
AGCGCACCCCGACACGTTCCCGAGCATCAGCGCAGCCAAAAAAGCTGTAC
GGCGGCAAGAGCTGCTGCTGAATGACGGCGAAGCCAACGTCAGTGCGCGC
GTCAACCCCGGCGACCGACTGAAACGGCTCGCACGCACCAAGCCCGCTAC
CACTGCAGCCCTCTTTGTAAAGCCCCACCTCTCCCTACCAATCGTATATG
AAGATGACTACATAGCTGTGGTTGTGAAGCCCCCGGGCATGCCAGTGCAC
GGGACCAAGATGGAGGAGGGGGCTCCCCCTAGGGACAAGAAGGCGCGGGG
GCCCGTGCCCTCATTGAGGACCGCGATTGCGCACTGCCTCAAGCCGTCTG
CGGCGACGGATGCTGTATTGAGGAGGCCTCAGCATGCCCACAGACTGGAT
GGCCCTACCGGCGGCCTCATGGTGTGCGCCAAGACGCGCCCGGCGCTGCA
GAACCTGAGTATCGCCTTCCAAGAGCGCAGAGTCCACAAGCGTTACCGCG
CTCTGGTCACGGGCCACCTAGAGGGCAGCGGCACTATCTCTACGCCGCTG
TCAGGGAAGCCCTCAGAGACTGAGTACTCTGTGCTGGATGAGCTGCGCGT
GCAGTCGCTGTTCAGCGGCACCATCACGACGGTGGATCTGTGGCCGAAGA
CAGGCAGGCACCACCAGCTACGCAAGCACCTCGCCAGTCTCAACGTGCCG
ATTCTGGGGGACAAGCGGTATCACCCTGCGGACCAGGCGGAGACGCTGCT
GAGGGGCGAGGGGCTGTTCCTGTGGGCACTGGAGTTGAAGTTTGATCATC
CGATCACGGGGGAGGCGCTGAATCTGACCATAGAGGAGCCGGAAAAGTTT
ACAAAGTGGCGGGAAAAGGAGCAGCGACGGTGGGAGAAACTGTCCAGTGT
GCCAAAGAAAGTAAAGTTGGGTGCAGAGGGCGAGGCTCCCTGTGGCGATG
ATGTTGCGGGAGGGGCAGAAGAAGCGTACCAAGACAACAGTGACTCTGAT
GACGCTGAAGAGTTTGAAGTATCTGATGCTGAATAGTAACCGCAAGTTGT
CATGG
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protein sequence of jgi.p|Trimin1|352892

>Trimin1|352892|estExt_Genemark1.C_Ctg_1350028 ID=Trimin1|352892|estExt_Genemark1.C_Ctg_1350028|Name=jgi.p|Trimin1|352892|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=392bp
MRKIGSTADFEVVQSMEVAERPPHVPADVRRGETGEWPMLLPMYLYAAHP
DTFPSISAAKKAVRRQELLLNDGEANVSARVNPGDRLKRLARTKPATTAA
LFVKPHLSLPIVYEDDYIAVVVKPPGMPVHGTKMEEGAPPRDKKARGPVP
SLRTAIAHCLKPSAATDAVLRRPQHAHRLDGPTGGLMVCAKTRPALQNLS
IAFQERRVHKRYRALVTGHLEGSGTISTPLSGKPSETEYSVLDELRVQSL
FSGTITTVDLWPKTGRHHQLRKHLASLNVPILGDKRYHPADQAETLLRGE
GLFLWALELKFDHPITGEALNLTIEEPEKFTKWREKEQRRWEKLSSVPKK
VKLGAEGEAPCGDDVAGGAEEAYQDNSDSDDAEEFEVSDAE*
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mRNA from alignment at Contig_135:279610..281921-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14968 ID=mRNA_14968|Name=jgi.p|Trimin1|352892|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2312bp|location=Sequence derived from alignment at Contig_135:279610..281921- (Tribonema minus UTEX_B_3156 )
CTGCTGCTGGCCAGCACCGCACACGCCTTGATTCTTCAGGCTCCTCAAGT GCTGGACGACATGAGAAAGATAGGCAGCACCGCCGACTTCGAGGTGGTAC AGAGTATGGAGGTCGCTGAGCGGCCACCACATGTGCCAGCGGACGTCAGG CGCGGCGAGACGGGGGAGTGGCCGATGCTGCTGCCAATGTACCTTTACGC AGCGCACCCCGACACGTTCCCGAGCATCAGCGCAGCCAAAAAAGCTGTAC GGCGGCAAGAGGTGAGACTGCTGCGAACTCTGGTTGAAGTTGCACACAGG AAAGAAAATGTCGGCTTTGGCTCACTTGTGCAGCCGTCTGTCTGGTAGGC ACCAACTACAACAAGCTGGACTTCAACTCGGTATCCCTCAACACGTGCAT GAAAAGAACAGTATGTACAGGTTGATTGTATGCAACATTTCACCAAGCTG GGCTGGCAAAGCTGTGCAGCCTTTGTGCCAAATTATTCTACTTCACGACA TTCTGCTGCCATTTTCATTCATAAGCAGTATTGCTTGTGCAGTTGCAATG ATGATTTGTGTCGATGTCTGTTATGGCACAGCTGTCATGGCACAGCTGCT GCGGAACAATGTCAAAGTCAATGTCGCCCTCTGCGGCAAGCTTGGCAGCT GCTTGTGCCCCTCATATGCGCCACAGTGTTATTGACATCTCTGTACGTGT ATTGTGAGACATCACAAAAAGCAGCAGTAATAGTTTCAAGGCACACAATT GCAGCGGTGCTCAACAAGGATTGGCTGTTCATTGTTGTCGAATGCGGTCA TCCCCACAGCGAATAACCCAGCGCCTGGCCGCGTTGCATACTTATATTCC ACACACCATGCTCAACATCTACCCACCATACGCTGTTGAAACTCACAGCT GCTGCTGAATGACGGCGAAGCCAACGTCAGTGCGCGCGTCAACCCCGGCG ACCGACTGAAACGGCTCGCACGCACCAAGCCCGCTACCACTGCAGCCCTC TTTGTAAAGCCCCACCTCTCCCTACCAATCGTATATGAAGATGACTACAT AGCTGTGGTTGTGAAGCCCCCGGGCATGCCAGTGCACGGGACCAAGATGG AGGAGGGGGCTCCCCCTAGGGACAAGAAGGCGCGGGGGCCCGTGCCCTCA TTGAGGACCGCGATTGCGCACTGCCTCAAGCCGTCTGCGGCGACGGATGC TGTATTGAGGAGGCCTCAGCATGCCCACAGGTACTACACATGTGTGTTTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACTGGAAAGCAAGCCG TGAAGGCGTAATGTTTGTATGAGGCAGTGAATATGATGTGCGCGGTGTGT GGTAGAGCGGTACGCGTTGTATAGTGATCTGGCAATTATTGTTTGAGCAC TGAGGCACTTGATCACAATAATGGCCACTGCGCACCGCTTGAGGCCGGCA ATTTGCAATGCTTCTTCAGGGCCACTGCATGGTCATGGGTTCATGTGCGC AGGAAGCCACAGCATGCTCACGTGTAAGTCATTGAAATCATGTTGTGCAC CAACAAGATGCCCTGCACGTTGCCCACTCTGAGCATCAAGCACCAACATC ACACCTTTGCTACACTGATGCAATTGTCACACACTCGCCATTCTCAACAG ACTGGATGGCCCTACCGGCGGCCTCATGGTGTGCGCCAAGACGCGCCCGG CGCTGCAGAACCTGAGTATCGCCTTCCAAGAGCGCAGAGTCCACAAGCGT TACCGCGCTCTGGTCACGGGCCACCTAGAGGGCAGCGGCACTATCTCTAC GCCGCTGTCAGGGAAGCCCTCAGAGACTGAGTACTCTGTGCTGGATGAGC TGCGCGTGCAGTCGCTGTTCAGCGGCACCATCACGACGGTGGATCTGTGG CCGAAGACAGGCAGGCACCACCAGCTACGCAAGCACCTCGCCAGTCTCAA CGTGCCGATTCTGGGGGACAAGCGGTATCACCCTGCGGACCAGGCGGAGA CGCTGCTGAGGGGCGAGGGGCTGTTCCTGTGGGCACTGGAGTTGAAGTTT GATCATCCGATCACGGGGGAGGCGCTGAATCTGACCATAGAGGAGCCGGA AAAGTTTACAAAGTGGCGGGAAAAGGAGCAGCGACGGTGGGAGAAACTGT CCAGTGTGCCAAAGAAAGTAAAGTTGGGTGCAGAGGGCGAGGCTCCCTGT GGCGATGATGTTGCGGGAGGGGCAGAAGAAGCGTACCAAGACAACAGTGA CTCTGATGACGCTGAAGAGTTTGAAGTATCTGATGCTGAATAGTAACCGC AAGTTGTCATGG
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Coding sequence (CDS) from alignment at Contig_135:279610..281921-

>mRNA_14968 ID=mRNA_14968|Name=jgi.p|Trimin1|352892|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1176bp|location=Sequence derived from alignment at Contig_135:279610..281921- (Tribonema minus UTEX_B_3156 )
ATGAGAAAGATAGGCAGCACCGCCGACTTCGAGGTGGTACAGAGTATGGA
GGTCGCTGAGCGGCCACCACATGTGCCAGCGGACGTCAGGCGCGGCGAGA
CGGGGGAGTGGCCGATGCTGCTGCCAATGTACCTTTACGCAGCGCACCCC
GACACGTTCCCGAGCATCAGCGCAGCCAAAAAAGCTGTACGGCGGCAAGA
GCTGCTGCTGAATGACGGCGAAGCCAACGTCAGTGCGCGCGTCAACCCCG
GCGACCGACTGAAACGGCTCGCACGCACCAAGCCCGCTACCACTGCAGCC
CTCTTTGTAAAGCCCCACCTCTCCCTACCAATCGTATATGAAGATGACTA
CATAGCTGTGGTTGTGAAGCCCCCGGGCATGCCAGTGCACGGGACCAAGA
TGGAGGAGGGGGCTCCCCCTAGGGACAAGAAGGCGCGGGGGCCCGTGCCC
TCATTGAGGACCGCGATTGCGCACTGCCTCAAGCCGTCTGCGGCGACGGA
TGCTGTATTGAGGAGGCCTCAGCATGCCCACAGACTGGATGGCCCTACCG
GCGGCCTCATGGTGTGCGCCAAGACGCGCCCGGCGCTGCAGAACCTGAGT
ATCGCCTTCCAAGAGCGCAGAGTCCACAAGCGTTACCGCGCTCTGGTCAC
GGGCCACCTAGAGGGCAGCGGCACTATCTCTACGCCGCTGTCAGGGAAGC
CCTCAGAGACTGAGTACTCTGTGCTGGATGAGCTGCGCGTGCAGTCGCTG
TTCAGCGGCACCATCACGACGGTGGATCTGTGGCCGAAGACAGGCAGGCA
CCACCAGCTACGCAAGCACCTCGCCAGTCTCAACGTGCCGATTCTGGGGG
ACAAGCGGTATCACCCTGCGGACCAGGCGGAGACGCTGCTGAGGGGCGAG
GGGCTGTTCCTGTGGGCACTGGAGTTGAAGTTTGATCATCCGATCACGGG
GGAGGCGCTGAATCTGACCATAGAGGAGCCGGAAAAGTTTACAAAGTGGC
GGGAAAAGGAGCAGCGACGGTGGGAGAAACTGTCCAGTGTGCCAAAGAAA
GTAAAGTTGGGTGCAGAGGGCGAGGCTCCCTGTGGCGATGATGTTGCGGG
AGGGGCAGAAGAAGCGTACCAAGACAACAGTGACTCTGATGACGCTGAAG
AGTTTGAAGTATCTGATGCTGAATAG
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