mRNA_14451 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352810
Unique NamemRNA_14451
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA)

HSP 1 Score: 306 bits (785), Expect = 8.650e-105
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 3
Query:    3 MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP
Sbjct:    1 MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.750e-39
Identity = 78/139 (56.12%), Postives = 92/139 (66.19%), Query Frame = 3
Query:   60 AEAFL-VAPALQRPVQRDTLTPRMLFG--KKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            A AFL  + AL R     + + +MLFG  KKAAP K K   +TV+Q+ F D  +  E   NLRK LM   I+IYPLQGK+ NCGGGG CGTC V V+ G NN SPK P EKK+L  KPE YRLSCCT+V+G  TV TKP
Sbjct:   16 ASAFLGQSLALNRVQASSSTSLQMLFGSKKKAAPVKGK-YSITVKQRGFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVLSKKPENYRLSCCTRVSGACTVRTKP 153          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.270e-38
Identity = 79/140 (56.43%), Postives = 93/140 (66.43%), Query Frame = 3
Query:   63 EAFLVAPALQRPVQRDTLTP-RMLFGKKAAPAKSKG-IEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLL--GNKPETYRLSCCTKVNGNITVATKP 467
              F+VAP+    V+R + +  +MLFG           I V VQQK  FK+T + +    NLRKALM   I+IYPLQGKIYNCGGGGSCGTC VNV AG  NCSPKGP EKKLL    +P +YRLSCCT V+G +TV TKP
Sbjct:   20 NGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.030e-34
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 3
Query:  129 LFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQ--PGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKP-ETYRLSCCTKVNGNITVATKP 467
            +FGKK+A    K   VTVQQK++K+  + +E   P NLRK LM   I+IYPLQGKIYNCGGGG CGTC + ++ G  N +PK P E K LG K  +  RL+CCT+ +G++TV TKP
Sbjct:   43 MFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1)

HSP 1 Score: 98.6 bits (244), Expect = 2.390e-22
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  168 IEVTVQQKYFKDTVVAMEQP--GNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNK--PETYRLSCCTKVNGNITVATKP 467
            ++VTV +K   +  V +E P   NLRK L+   I++Y L+GK+ NCGGGG CGTC V++  G  N +P+G  E ++  NK  P+++RLSCCTK+ G ITV TKP
Sbjct:   88 VQVTVYEKGKSEPRV-LEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A1X6NLG4_PORUM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLG4_PORUM)

HSP 1 Score: 97.8 bits (242), Expect = 3.350e-22
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  168 IEVTVQQKY----FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            + VTV +K     FK T V +    ++R AL  AGI++Y L+GK+ NCGGG SCGTC V+VV GG  C+     E + L  +PE++RL+C  KV G++T+ TKP
Sbjct:   72 VTVTVMEKNGKDSFKTTEVEVSTDQDMRSALQAAGIDVYTLRGKLTNCGGGASCGTCKVDVVEGGGLCNGVSGREDRKLDGQPESWRLACQLKVLGDVTIRTKP 175          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: K9RX56_SYNP3 (Ferredoxin n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RX56_SYNP3)

HSP 1 Score: 92.8 bits (229), Expect = 4.520e-21
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  231 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            NLR   + AGI++Y L+GK+ NC G G CGTC V +V G  N S + P E + L  KPE++RL+C TKVNG +TV TKP
Sbjct:   29 NLRLRALEAGIDLYTLKGKLMNCNGYGQCGTCIVEIVEGMENLSERTPVENRKLKKKPESFRLACQTKVNGPVTVKTKP 107          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: Q8DIQ2_THEVB (Tll1529 protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=Q8DIQ2_THEVB)

HSP 1 Score: 92.8 bits (229), Expect = 4.640e-21
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  231 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            NLR   M AG+++Y L+GK++NCGG G CGTC V +V G  + SP+ P E++ L  KPE YRL+C T V G ++V TKP
Sbjct:   28 NLRLKAMEAGVDLYTLKGKLFNCGGYGQCGTCIVEIVEGMEHLSPRTPVEERKLRRKPENYRLACQTLVYGPVSVKTKP 106          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A218QTJ0_9CYAN (Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A218QTJ0_9CYAN)

HSP 1 Score: 92.4 bits (228), Expect = 4.960e-21
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  231 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            NLR   M   I+IY   GK+ NCGGGG+CGTC V +V G  N SP+  AE ++L  KPE YRL+C T VNG ++V TKP
Sbjct:   20 NLRLKAMQNNIDIYKFIGKMTNCGGGGNCGTCIVEIVEGIENLSPRTDAENRILKKKPENYRLACQTVVNGAVSVVTKP 98          
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A2D2Q562_THELV (Iron ABC transporter substrate-binding protein n=2 Tax=Thermostichus lividus TaxID=33070 RepID=A0A2D2Q562_THELV)

HSP 1 Score: 92.0 bits (227), Expect = 7.200e-21
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  210 VAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 467
            +   Q  NLR   M AG+++Y L+GK++NCGG G CGTC V ++ G  + SP+   E++ L  KP+ YRL+C T VNG ++V TKP
Sbjct:   14 IVAAQGANLRLKAMEAGVDLYTLKGKLFNCGGYGQCGTCIVEILEGMEHLSPRTAVEERKLRRKPDNYRLACQTLVNGPVSVKTKP 99          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352810 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNT2_9STRA8.650e-105100.00Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S2UXM9_9STRA3.750e-3956.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LBE9_ECTSI1.270e-3856.43Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
W7TM71_9STRA1.030e-3453.45Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 Re... [more]
M1VFK1_CYAM12.390e-2248.082Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A1X6NLG4_PORUM3.350e-2246.152Fe-2S ferredoxin-type domain-containing protein n... [more]
K9RX56_SYNP34.520e-2153.16Ferredoxin n=1 Tax=Synechococcus sp. (strain ATCC ... [more]
Q8DIQ2_THEVB4.640e-2151.90Tll1529 protein n=8 Tax=Cyanobacteria TaxID=1117 R... [more]
A0A218QTJ0_9CYAN4.960e-2154.43Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=... [more]
A0A2D2Q562_THELV7.200e-2146.51Iron ABC transporter substrate-binding protein n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:284994..285709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352810|estExt_Genemark1.C_Ctg_1320034
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0633@1|root,2RXME@2759|Eukaryota
Evalue2.2e-23
Seed ortholog45157.CME070CT
Hectar predicted targeting categorysignal peptide
TranscriptId353132
TrackFilteredModels1
ProteinId352810
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352810gene_14451Tribonema minus UTEX_B_3156 geneContig_132 284994..285709 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14451_1exon_14451_1Tribonema minus UTEX_B_3156 exonContig_132 284994..285288 +
exon_14451_2exon_14451_2Tribonema minus UTEX_B_3156 exonContig_132 285410..285709 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14451UTR5_14451Tribonema minus UTEX_B_3156 five_prime_UTRContig_132 284994..284995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14451CDS_14451Tribonema minus UTEX_B_3156 CDSContig_132 284996..285288 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14451UTR3_14451Tribonema minus UTEX_B_3156 three_prime_UTRContig_132 285585..285709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352810Trimin1|352810|estExt_Genemark1.C_Ctg_1320034Tribonema minus UTEX_B_3156 polypeptideContig_132 284996..285584 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14451 ID=mRNA_14451|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=595bp|location=Sequence derived from alignment at Contig_132:284994..285709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TCATGGTGTTCGCCAGGCTGATGCTGCTCGTGGGGAGCGCTCTCAGTGTG
ATGCTGGCAGCCGAAGCTTTCCTGGTCGCGCCTGCCCTGCAGCGGCCTGT
CCAGCGCGACACCCTCACACCGCGCATGCTTTTTGGGAAGAAGGCCGCAC
CTGCCAAAAGCAAGGGCATCGAGGTAACTGTGCAACAGAAGTACTTCAAA
GACACTGTTGTCGCCATGGAGCAGCCTGGCAATCTTAGGAAGGCGCTGAT
GGGAGCGGGCATCGAGATATACCCGCTGCAAGGCAAAATATACAACTGTG
GAGGTGGCGGCAGCTGCGGAACCTGCACCGTGAATGTGGTGGCTGGCGGC
AACAACTGCAGCCCCAAGGGCCCCGCGGAGAAGAAGCTGCTGGGCAACAA
GCCTGAAACATACAGGCTGTCGTGCTGCACGAAGGTCAACGGAAACATCA
CAGTGGCAACCAAGCCATAGAGTAAGGGAACTAAGTAACGTAGACTCTGT
GTCTGCAGTGAAAGTGCGCGCGACGTTGTAGCGGATTAGTCCCCATAATC
AAATATATGTCAAAGTATCTGCAAGGCATCTGTGGTGATGCCGAC
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protein sequence of jgi.p|Trimin1|352810

>Trimin1|352810|estExt_Genemark1.C_Ctg_1320034 ID=Trimin1|352810|estExt_Genemark1.C_Ctg_1320034|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAP
AKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCG
GGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNIT
VATKP*
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mRNA from alignment at Contig_132:284994..285709+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14451 ID=mRNA_14451|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=716bp|location=Sequence derived from alignment at Contig_132:284994..285709+ (Tribonema minus UTEX_B_3156 )
TCATGGTGTTCGCCAGGCTGATGCTGCTCGTGGGGAGCGCTCTCAGTGTG ATGCTGGCAGCCGAAGCTTTCCTGGTCGCGCCTGCCCTGCAGCGGCCTGT CCAGCGCGACACCCTCACACCGCGCATGCTTTTTGGGAAGAAGGCCGCAC CTGCCAAAAGCAAGGGCATCGAGGTAACTGTGCAACAGAAGTACTTCAAA GACACTGTTGTCGCCATGGAGCAGCCTGGCAATCTTAGGAAGGCGCTGAT GGGAGCGGGCATCGAGATATACCCGCTGCAAGGCAAAATATACAAGTGAG TGTGTGCTTGATGCGATGCTACGTCATGCATATATGCTACTGGCAGGGAT GATGCACAAAGAGTGCTGGCACGGAGTCCCTTCTTGACTCATTGCTGCTG CCTTCACTCTTTGCAGCTGTGGAGGTGGCGGCAGCTGCGGAACCTGCACC GTGAATGTGGTGGCTGGCGGCAACAACTGCAGCCCCAAGGGCCCCGCGGA GAAGAAGCTGCTGGGCAACAAGCCTGAAACATACAGGCTGTCGTGCTGCA CGAAGGTCAACGGAAACATCACAGTGGCAACCAAGCCATAGAGTAAGGGA ACTAAGTAACGTAGACTCTGTGTCTGCAGTGAAAGTGCGCGCGACGTTGT AGCGGATTAGTCCCCATAATCAAATATATGTCAAAGTATCTGCAAGGCAT CTGTGGTGATGCCGAC
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Coding sequence (CDS) from alignment at Contig_132:284994..285709+

>mRNA_14451 ID=mRNA_14451|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_132:284994..285709+ (Tribonema minus UTEX_B_3156 )
ATGGTGTTCGCCAGGCTGATGCTGCTCGTGGGGAGCGCTCTCAGTGTGAT
GCTGGCAGCCGAAGCTTTCCTGGTCGCGCCTGCCCTGCAGCGGCCTGTCC
AGCGCGACACCCTCACACCGCGCATGCTTTTTGGGAAGAAGGCCGCACCT
GCCAAAAGCAAGGGCATCGAGGTAACTGTGCAACAGAAGTACTTCAAAGA
CACTGTTGTCGCCATGGAGCAGCCTGGCAATCTTAGGAAGGCGCTGATGG
GAGCGGGCATCGAGATATACCCGCTGCAAGGCAAAATATACAACTGTGGA
GGTGGCGGCAGCTGCGGAACCTGCACCGTGAATGTGGTGGCTGGCGGCAA
CAACTGCAGCCCCAAGGGCCCCGCGGAGAAGAAGCTGCTGGGCAACAAGC
CTGAAACATACAGGCTGTCGTGCTGCACGAAGGTCAACGGAAACATCACA
GTGGCAACCAAGCCATAG
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