Trimin1|352810|estExt_Genemark1.C_Ctg_1320034 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352810
Unique Name	Trimin1\|352810\|estExt_Genemark1.C_Ctg_1320034
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	156

Homology

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A836CNT2_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNT2_9STRA)

HSP 1 Score: 306 bits (783), Expect = 3.340e-105
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP
Sbjct:    1 MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A7S2UXM9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.790e-39
Identity = 78/139 (56.12%), Postives = 92/139 (66.19%), Query Frame = 0

Query:   20 AEAFL-VAPALQRPVQRDTLTPRMLFG--KKAAPAKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            A AFL  + AL R     + + +MLFG  KKAAP K K   +TV+Q+ F D  +  E   NLRK LM   I+IYPLQGK+ NCGGGG CGTC V V+ G NN SPK P EKK+L  KPE YRLSCCT+V+G  TV TKP
Sbjct:   16 ASAFLGQSLALNRVQASSSTSLQMLFGSKKKAAPVKGK-YSITVKQRGFTDFDLETEGTANLRKTLMAQKIDIYPLQGKLTNCGGGGVCGTCAVEVMDGANNLSPKAPNEKKVLSKKPENYRLSCCTRVSGACTVRTKP 153

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: D8LBE9_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBE9_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 6.090e-39
Identity = 79/140 (56.43%), Postives = 93/140 (66.43%), Query Frame = 0

Query:   21 EAFLVAPALQRPVQRDTLTP-RMLFGKKAAPAKSKG-IEVTVQQKY-FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLL--GNKPETYRLSCCTKVNGNITVATKP 155
              F+VAP+    V+R + +  +MLFG           I V VQQK  FK+T + +    NLRKALM   I+IYPLQGKIYNCGGGGSCGTC VNV AG  NCSPKGP EKKLL    +P +YRLSCCT V+G +TV TKP
Sbjct:   20 NGFVVAPSSSLNVRRQSHSGMQMLFGXXXXXXXXXXXIVVKVQQKTGFKETELTLAGKTNLRKALMDNKIDIYPLQGKIYNCGGGGSCGTCAVNVKAGAQNCSPKGPGEKKLLDKNKRPASYRLSCCTMVSGPVTVQTKP 159

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: W7TM71_9STRA (Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM71_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.090e-35
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 0

Query:   43 LFGKKAAPAKSKGIEVTVQQKYFKDTVVAMEQ--PGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKP-ETYRLSCCTKVNGNITVATKP 155
            +FGKK+A    K   VTVQQK++K+  + +E   P NLRK LM   I+IYPLQGKIYNCGGGG CGTC + ++ G  N +PK P E K LG K  +  RL+CCT+ +G++TV TKP
Sbjct:   43 MFGKKSAGGNKKTFTVTVQQKFYKNAELEVEAGAPVNLRKELMKNKIDIYPLQGKIYNCGGGGQCGTCAIQIIKGAKNLNPKSPVEVKALGGKKGDDIRLACCTRASGDVTVKTKP 158

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: M1VFK1_CYAM1 (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFK1_CYAM1)

HSP 1 Score: 97.8 bits (242), Expect = 1.340e-22
Identity = 50/104 (48.08%), Postives = 70/104 (67.31%), Query Frame = 0

Query:   56 IEVTVQQKYFKDTVVAMEQP--GNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNK--PETYRLSCCTKVNGNITVATKP 155
            ++VTV +K   +  V +E P   NLRK L+   I++Y L+GK+ NCGGGG CGTC V++  G  N +P+G  E ++  NK  P+++RLSCCTK+ G ITV TKP
Sbjct:   88 VQVTVYEKGKSEPRV-LEAPVGSNLRKVLLENKIDVYTLRGKLTNCGGGGQCGTCIVDITEGQYNTNPRGWREARIFENKQAPDSWRLSCCTKIEGPITVRTKP 190

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A1X6NLG4_PORUM (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLG4_PORUM)

HSP 1 Score: 97.1 bits (240), Expect = 1.900e-22
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0

Query:   56 IEVTVQQKY----FKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            + VTV +K     FK T V +    ++R AL  AGI++Y L+GK+ NCGGG SCGTC V+VV GG  C+     E + L  +PE++RL+C  KV G++T+ TKP
Sbjct:   72 VTVTVMEKNGKDSFKTTEVEVSTDQDMRSALQAAGIDVYTLRGKLTNCGGGASCGTCKVDVVEGGGLCNGVSGREDRKLDGQPESWRLACQLKVLGDVTIRTKP 175

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: K9RX56_SYNP3 (Ferredoxin n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=K9RX56_SYNP3)

HSP 1 Score: 92.0 bits (227), Expect = 2.650e-21
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 0

Query:   77 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            NLR   + AGI++Y L+GK+ NC G G CGTC V +V G  N S + P E + L  KPE++RL+C TKVNG +TV TKP
Sbjct:   29 NLRLRALEAGIDLYTLKGKLMNCNGYGQCGTCIVEIVEGMENLSERTPVENRKLKKKPESFRLACQTKVNGPVTVKTKP 107

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: Q8DIQ2_THEVB (Tll1529 protein n=8 Tax=Cyanobacteria TaxID=1117 RepID=Q8DIQ2_THEVB)

HSP 1 Score: 92.0 bits (227), Expect = 2.730e-21
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 0

Query:   77 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            NLR   M AG+++Y L+GK++NCGG G CGTC V +V G  + SP+ P E++ L  KPE YRL+C T V G ++V TKP
Sbjct:   28 NLRLKAMEAGVDLYTLKGKLFNCGGYGQCGTCIVEIVEGMEHLSPRTPVEERKLRRKPENYRLACQTLVYGPVSVKTKP 106

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A218QTJ0_9CYAN (Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A218QTJ0_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 2.930e-21
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 0

Query:   77 NLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            NLR   M   I+IY   GK+ NCGGGG+CGTC V +V G  N SP+  AE ++L  KPE YRL+C T VNG ++V TKP
Sbjct:   20 NLRLKAMQNNIDIYKFIGKMTNCGGGGNCGTCIVEIVEGIENLSPRTDAENRILKKKPENYRLACQTVVNGAVSVVTKP 98

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BLAST of jgi.p|Trimin1|352810 vs. uniprot
Match: A0A2D2Q562_THELV (Iron ABC transporter substrate-binding protein n=2 Tax=Thermostichus lividus TaxID=33070 RepID=A0A2D2Q562_THELV)

HSP 1 Score: 91.3 bits (225), Expect = 4.260e-21
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 0

Query:   70 VAMEQPGNLRKALMGAGIEIYPLQGKIYNCGGGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNITVATKP 155
            +   Q  NLR   M AG+++Y L+GK++NCGG G CGTC V ++ G  + SP+   E++ L  KP+ YRL+C T VNG ++V TKP
Sbjct:   14 IVAAQGANLRLKAMEAGVDLYTLKGKLFNCGGYGQCGTCIVEILEGMEHLSPRTAVEERKLRRKPDNYRLACQTLVNGPVSVKTKP 99

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352810 vs. uniprot

BLAST of jgi.p|Trimin1|352810 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CNT2_9STRA	3.340e-105	100.00	Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 Re...	[more]
A0A7S2UXM9_9STRA	1.790e-39	56.12	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
D8LBE9_ECTSI	6.090e-39	56.43	Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=28...	[more]
W7TM71_9STRA	5.090e-35	53.45	Ferredoxin n=2 Tax=Monodopsidaceae TaxID=425072 Re...	[more]
M1VFK1_CYAM1	1.340e-22	48.08	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
A0A1X6NLG4_PORUM	1.900e-22	46.15	2Fe-2S ferredoxin-type domain-containing protein n...	[more]
K9RX56_SYNP3	2.650e-21	53.16	Ferredoxin n=1 Tax=Synechococcus sp. (strain ATCC ...	[more]
Q8DIQ2_THEVB	2.730e-21	51.90	Tll1529 protein n=8 Tax=Cyanobacteria TaxID=1117 R...	[more]
A0A218QTJ0_9CYAN	2.930e-21	54.43	Ferredoxin n=3 Tax=Cyanobacteria TaxID=1117 RepID=...	[more]
A0A2D2Q562_THELV	4.260e-21	46.51	Iron ABC transporter substrate-binding protein n=2...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 97..145 e-value: 3.2E-8 score: 33.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 56..155 score: 9.142049
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 56..153 e-value: 1.6E-16 score: 61.9
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 64..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_132	contig	Contig_132:284996..285584 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352810	mRNA_14451	Tribonema minus UTEX_B_3156	mRNA	Contig_132 284994..285709 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352810|estExt_Genemark1.C_Ctg_1320034 ID=Trimin1|352810|estExt_Genemark1.C_Ctg_1320034|Name=jgi.p|Trimin1|352810|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MVFARLMLLVGSALSVMLAAEAFLVAPALQRPVQRDTLTPRMLFGKKAAP
AKSKGIEVTVQQKYFKDTVVAMEQPGNLRKALMGAGIEIYPLQGKIYNCG
GGGSCGTCTVNVVAGGNNCSPKGPAEKKLLGNKPETYRLSCCTKVNGNIT
VATKP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001041	2Fe-2S_ferredoxin-type
IPR012675	Beta-grasp_dom_sf
IPR036010	2Fe-2S_ferredoxin-like_sf