mRNA_14425 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352800
Unique NamemRNA_14425
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352800 vs. uniprot
Match: A0A835ZBQ8_9STRA (FoP_duplication domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBQ8_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.620e-58
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:   31 MARPQTGVVAAGVVLVAVAAAEAAGHDQVAAVEAGGDGAAGGVAADLDAQMLQYYIKKDPAAAQKALDSSMDDYWKNKDAAAPAEGAAEGTAAEGTDAAAAVXXXXXXXXXXXXXXXXXXXXXXXEAVAEGA 426
            MARPQTGVVAAGVVLVAVAAAEAAGHDQVAAVEAGGDGAAGGVAADLDAQMLQYYIKKDPAAAQKALDSSMDDYWKNKDAAAPAEGAAEGTAAEGTDAAAAVXXXXXXXXXXXXXXXXXXXXXXXEAVAEGA
Sbjct:    1 MARPQTGVVAAGVVLVAVAAAEAAGHDQVAAVEAGGDGAAGGVAADLDAQMLQYYIKKDPAAAQKALDSSMDDYWKNKDAAAPAEGAAEGTAAEGTDAAAAVXXXXXXXXXXXXXXXXXXXXXXXEAVAEGA 132
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352800 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZBQ8_9STRA6.620e-58100.00FoP_duplication domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:84144..87077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352800|estExt_Genemark1.C_Ctg_1320015
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionFriend of PRMT1 duplication
Ec32 orthologEc-12_007810.1
TranscriptId353122
TrackFilteredModels1
ProteinId352800
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352800gene_14425Tribonema minus UTEX_B_3156 geneContig_132 84144..87077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352800Trimin1|352800|estExt_Genemark1.C_Ctg_1320015Tribonema minus UTEX_B_3156 polypeptideContig_132 84144..87047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14425_3exon_14425_3Tribonema minus UTEX_B_3156 exonContig_132 84144..84406 -
exon_14425_2exon_14425_2Tribonema minus UTEX_B_3156 exonContig_132 85955..86074 -
exon_14425_1exon_14425_1Tribonema minus UTEX_B_3156 exonContig_132 87032..87077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14425CDS_14425Tribonema minus UTEX_B_3156 CDSContig_132 87032..87047 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14425UTR5_14425Tribonema minus UTEX_B_3156 five_prime_UTRContig_132 87048..87077 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14425 ID=mRNA_14425|Name=jgi.p|Trimin1|352800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_132:84144..87077- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAACTTTCTGCTTCGGGCCGTAAAGACATCATGGCGAGACCACAAACGGG
GGTGGTGGCGGCGGGGGTGGTTCTGGTGGCGGTGGCGGCGGCGGAGGCGG
CGGGGCACGATCAGGTGGCGGCCGTGGAAGCGGGAGGGGACGGGGCGGCG
GGAGGGGTGGCGGCAGATCTGGACGCCCAGATGCTCCAGTACTACATCAA
GAAGGACCCTGCTGCCGCACAGAAGGCGCTGGACTCAAGCATGGACGACT
ACTGGAAGAACAAGGACGCAGCGGCGCCCGCCGAGGGTGCAGCTGAGGGC
ACAGCTGCCGAGGGCACGGATGCTGCTGCCGCTGTGGCTGCGGACGGCAC
GGAGGAGAATGGAGGCGGCGATGCTGCAAAGGCAGCAGCGGAGGGCGTGG
AGGAGGAGGCAGTGGCAGAGGGGGCGTAA
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protein sequence of jgi.p|Trimin1|352800

>Trimin1|352800|estExt_Genemark1.C_Ctg_1320015 ID=Trimin1|352800|estExt_Genemark1.C_Ctg_1320015|Name=jgi.p|Trimin1|352800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=133bp
MARPQTGVVAAGVVLVAVAAAEAAGHDQVAAVEAGGDGAAGGVAADLDAQ
MLQYYIKKDPAAAQKALDSSMDDYWKNKDAAAPAEGAAEGTAAEGTDAAA
AVAADGTEENGGGDAAKAAAEGVEEEAVAEGA*
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mRNA from alignment at Contig_132:84144..87077-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14425 ID=mRNA_14425|Name=jgi.p|Trimin1|352800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2934bp|location=Sequence derived from alignment at Contig_132:84144..87077- (Tribonema minus UTEX_B_3156 )
CAACTTTCTGCTTCGGGCCGTAAAGACATCATGGCGAGACCACAAAGTGA
GTGCAACATCAGCCACTGCCCCTGCGACTGATGTCGGGCTGGAACGTCCT
CGCTGTGAAACTCTGTGCCTGGTGCACGGTGAAAGATATACGGACCAACA
CGGGCACAACCGGCTGACCTCGGCAATGCAGCGTTATAGGAAATTATCCA
GATGCACTGGATGCTCTGGATGTTGGAGGCTGTCGCTAAATCGAGCTCGT
CGTCCGCTGTGTGGTCAGGCTTGGGTTGCTGCGTCCATTTTTGGGGGTTG
ACAGACCATAGCCAGGCGCCGGCGGCATCTCATTGACGCCCCGCTCTCTC
TGCTGCATTGCCCCTTGCACGGATCGCCCTCTGCCTCGGCCCTTCAACGA
ATGATCTTCAGACGAGGGACGACAGCGGGTGAGTGCAACATCAACATTTT
ATATCTCTTTGCCTGCAAGTTTAGCCAGTGTGTATTTCTATCATGTATGC
ATCAGAACGGGTACACAGCGGTATAAAATTGCGTTGCCACTTTATGCCTG
AAAACCCGACCTCTTTTGCTGCTGCAAATGGTTGCCGAAATAAGCTTTCA
CTGAACGCCCCTGTGGAAGCGACGTCAACCATCTTACTGGCCAAAGCTTC
CATCTGCTCTGTTGTTCATTGAATTCACACCCGCTTGGAAAGAATCAGGC
TTCGTTCACCGGACGACACCGAATGCACCTCATATGGTGAACATACCATC
TACAGAGATCATTTCATCTCAAGTTCAAAGACATGCTGCTGTTACTGCTG
CTGCTAGCGTCTGCTTCTCAACTGTAAGGGTTGAGCTGCTCCTCAACTGT
GCAGGAGCTGCCTTGTGTGCCACGCAAACCTAGGATTGCCACACTCTGCG
TATGGTGCACACCTGACAAACTGGTCTCCCATCCTTTTGTCTGAGCACTG
CAGCCGGCAGCCTCGACAGCCAACAGGGGAGTCTCTAAATCTGGCGGCCG
CAGCGGGGGTGGTGGCGGCGGGGGTGGTTCTGGTGGCGGTGGCGGCGGCG
GAGGCGGCGGGGCACGATCAGGTGGCGGCCGTGGAAGCGGGAGGGGACGG
GGCGGCGGGAGGGGTGGCGGCAGGTATGTACTGCTACCGCTGTGAACAAC
GCACTTTGGGCATTTGATGCGGTGCCTCAGTGGTGGACTTTCGCATCCAT
TTAATTAACCATTGAGTGCCATGGCGTCTATACTTTCATCAGGGCATCTT
TGTCAAAGACCTCTGCTGTACTCACTAATGTTCATGATTGGCAGGCAAGC
TCATGATCATGCTCATGATTGAGCCCTCTCGCCAGCAATTTCCGCCGGTC
CTGCATCGAAGCATGCAACAAATGCCTACTTATATCTCAAACCACAGATT
AGGCTGCAATACCGACAAAGTCTGAGCAACAAGCAAAGGGTTTCAATGTA
ATGTTTGTGCTGTCAAACCCCCAGGTATGAATAGCGAAGCTCAAGTGTAC
AAGGGGTTGCGAAGTTATATCGTCCCCTCACACTATGGCGTGATTGATTA
ATATAGACTCGACACACATGACAACATGCATTTTGTGGGTGTCCTGTGTG
GAGACTACACAGAACGACAGCTTGGTTCACAGTCACTGACTGAGGACAAG
AAAAGCCCATCGTGCTCGGGATGCACCATATTTAGGCCAGACATAGACCG
TAGCAAGACTTTTCTAGCTGGCTTCCATCAATGCTGCTTGCGCAGCAAAT
CATGGGTGCCCTATAGTATGTATTGGTGCTTCCATCCATGGTGCACTGGT
GACACAGCATTGGTAAAGTTCCGCTGTTGCTTAAGGAGCGCCCTGCTAGC
ACGTGTTGTCAAAGTTTACTCAACAATATGCCCTAATGCAGTGATTTCAC
TGATGCAAGGATTGGCAACAATTTTGTTGGCACTGGCGTGTAGGTAATGA
CCCAGGCGCACACCAAACAGCTGTGTCACAAATGGCAGCTAAACTTCATC
TTGTAACATGCAATTGAAGAATAGGGGTGAAAGTCGCGCCATAAAGTGGC
AGGGCTGTTTGCTTTCTTTAAGGTTTGGCATGTGCTGCTGGCATCATACC
AGTCGCATGGGTCGACACGCAATTCACTTCAACGACACTTTGCGGTAACC
CTATGAAGCTGCAGTTACATTAGGCATGCTTCATGCTTGCAGGAAACAAC
GGCAATTTCACAACGGCAATATTGAATTACCCTAGTATTATCCCATCAAG
TCCTAGTGACACACACTTGCAAAGCGCCATAATTTTACGTCTGTGTTGCG
CATATGCATGCTAATCACTCGTTGCCACTTATTCATCGCAAGTTAATGGC
CACAAATGGCAGCAAGCGGCAATGCAGCATGCGTTCTCAAGCAGGCCACT
TTTAGTAGTACATATGTTGTCACTTCACAGAGTGGCGCTGCGGTCTCTGA
TGCCATGCCTTCTCGCAATCTGTGGTACATGTAGTACATCTTTGGAACAT
GTACACCTGTTGCAGGCACATTGTGACCGCCTCGTTCATAAGCTTTTCAG
TGAAGCAACTCATTGCCGAAGAACCCACAGCTCATGTTGCTCATCACACC
ATATGTGCATTGCAACTGTCGTACTCACAGGGGCGGCAGGCGCGACCAGA
AGCCCAAAATGACATCCGAAGATCTGGACGCCCAGATGCTCCAGTACTAC
ATCAAGAAGGACCCTGCTGCCGCACAGAAGGCGCTGGACTCAAGCATGGA
CGACTACTGGAAGAACAAGGACGCAGCGGCGCCCGCCGAGGGTGCAGCTG
AGGGCACAGCTGCCGAGGGCACGGATGCTGCTGCCGCTGTGGCTGCGGAC
GGCACGGAGGAGAATGGAGGCGGCGATGCTGCAAAGGCAGCAGCGGAGGG
CGTGGAGGAGGAGGCAGTGGCAGAGGGGGCGTAA
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Coding sequence (CDS) from alignment at Contig_132:84144..87077-

>mRNA_14425 ID=mRNA_14425|Name=jgi.p|Trimin1|352800|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=399bp|location=Sequence derived from alignment at Contig_132:84144..87077- (Tribonema minus UTEX_B_3156 )
ATGGCGAGACCACAAACGGGGGTGGTGGCGGCGGGGGTGGTTCTGGTGGC
GGTGGCGGCGGCGGAGGCGGCGGGGCACGATCAGGTGGCGGCCGTGGAAG
CGGGAGGGGACGGGGCGGCGGGAGGGGTGGCGGCAGATCTGGACGCCCAG
ATGCTCCAGTACTACATCAAGAAGGACCCTGCTGCCGCACAGAAGGCGCT
GGACTCAAGCATGGACGACTACTGGAAGAACAAGGACGCAGCGGCGCCCG
CCGAGGGTGCAGCTGAGGGCACAGCTGCCGAGGGCACGGATGCTGCTGCC
GCTGTGGCTGCGGACGGCACGGAGGAGAATGGAGGCGGCGATGCTGCAAA
GGCAGCAGCGGAGGGCGTGGAGGAGGAGGCAGTGGCAGAGGGGGCGTAA
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