mRNA_14416 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352793
Unique NamemRNA_14416
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A835ZDG0_9STRA (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG0_9STRA)

HSP 1 Score: 468 bits (1205), Expect = 1.230e-166
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 1
Query:    1 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK 708
            MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK
Sbjct:    1 MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK 236          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A6H5L2F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2F5_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.450e-82
Identity = 128/200 (64.00%), Postives = 160/200 (80.00%), Query Frame = 1
Query:   97 LAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAIL-PPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
            +A++E     TLWNVPNILT+AR++ +P+   +FYA +  RNIWC+A+FAGAA TDWLDG+ AR+  I +PFG+FLDPVADKL+V+ A+ILLSERLG WMTVC++IILCRE+A+SALREWMAQ+G R  VKVG AGK KTA QM+A+T LLLL+P AA  ++ P  A    K L+  S VLTVTSG+GYL+AAWPALMGK
Sbjct:  144 VAKLESAAATTLWNVPNILTMARVMAIPVFATIFYASLPRRNIWCSAIFAGAAFTDWLDGYIARRQGIVTPFGSFLDPVADKLLVSTALILLSERLGPWMTVCSAIILCRELAISALREWMAQLGLRETVKVGNAGKWKTATQMMAITMLLLLEPGAAVTLVNPATAMPIAKSLLYVSTVLTVTSGSGYLKAAWPALMGK 343          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: W7TJV8_9STRA (Cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.890e-62
Identity = 115/207 (55.56%), Postives = 147/207 (71.01%), Query Frame = 1
Query:   79 VVGEGSLAEVEGVNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGE-WMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPS-AAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
            + G G+ A   G N P+LWN+PNILTL R+I +P+L  ++Y   + RN  C+ LF  AA+TDWLDG+ AR+ N++SP GAFLDPVADKL+VA A++L+++RL    +TV T+II+CREI VSALREWMA  GAR  V VG  GK KTA QM+AL+ LL +QP  A+   L     + G  L+ FSAVLTV S  GY+QAAWPAL GK
Sbjct:  140 MAGGGNAASNRG-NEPSLWNLPNILTLLRVISIPVLIIIYYTSASWRNAACSGLFVFAAMTDWLDGYLARRMNLSSPLGAFLDPVADKLMVATALVLMADRLNSPVVTVSTAIIICREIGVSALREWMASQGARDTVAVGWWGKFKTATQMLALSVLLYVQPPLASHDALAHKLLEVGVGLLAFSAVLTVYSAVGYVQAAWPALTGK 345          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A7S2V0D2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D2_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.850e-62
Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  115 VNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMT-VCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696
            V    LWN+PNILT+ R++ +PI  F+FY P+  RN   AA+FA A+ TDWLDG+ ARK+ I SPFGAFLDPVADKL+VA A++LL+   G W+  V  +IIL REI VSALREWMA  G R  V+VGMAGK KTA QMV+L  LLL Q  A   +   +   A   L+  S VLTVTSG GYLQAAWPAL GK+
Sbjct:   22 VQIDNLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVSALREWMAGRGERSKVQVGMAGKVKTACQMVSLILLLLAQKGADCPLPVSLLHPAALALLYLSTVLTVTSGWGYLQAAWPALSGKE 216          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A7S2UZN3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN3_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.140e-60
Identity = 113/195 (57.95%), Postives = 136/195 (69.74%), Query Frame = 1
Query:  115 VNTPTLWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGEWMT-VCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696
            V    LWN+PNILT+ R++ +PI  F+FY P+  RN   AA+FA A+ TDWLDG+ ARK+ I SPFGAFLDPVADKL+VA A++LL+   G W+  V  +IIL REI VSALREWMA  G R  V+VGMAGK KTA QMV+L  LLL Q  A   +   +   A   L+  S VLTVTSG GYLQAAWPAL GK+
Sbjct:  135 VQIDNLWNIPNILTMLRVVAIPIFAFVFYLPVPWRNKATAAIFAVASATDWLDGYLARKWKITSPFGAFLDPVADKLMVASALVLLAGSEGGWVVAVPAAIILAREITVSALREWMAGRGERSKVQVGMAGKVKTACQMVSLILLLLAQKGADCPLPVSLLHPAALALLYLSTVLTVTSGWGYLQAAWPALSGKE 329          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A521V6W3_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Xanthomonadaceae TaxID=32033 RepID=A0A521V6W3_9GAMM)

HSP 1 Score: 179 bits (453), Expect = 6.990e-53
Identity = 99/191 (51.83%), Postives = 129/191 (67.54%), Query Frame = 1
Query:  136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPAILP---PVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
             +P ILTL R+  +P+L  +++ P    N   AA+FA A+ITDWLDGW AR+F + S FGAFLDPVADKL+V+ A+ L+ +     WM +  ++I+ REIAVSALREWMA++G RG V V   GK KT AQMVALT LL  + PS  P   P    + F  G WL+  +A+LT+ SG GYL+AAWP+L GK
Sbjct:    4 TLPTILTLIRIALIPVLAAVYFLPYGWTNFAAAAVFAFASITDWLDGWIARRFGMTSAFGAFLDPVADKLMVSTALFLIVQGHPTAWMALWAAVIVGREIAVSALREWMAEVGQRGKVAVAAIGKFKTVAQMVALTCLLYSVTPSQPPHPTPWMGNLIFHIGDWLLAIAALLTLWSGLGYLRAAWPSLQGK 194          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A7Y5D988_LYSSP (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Lysobacter sp. TaxID=72226 RepID=A0A7Y5D988_LYSSP)

HSP 1 Score: 179 bits (454), Expect = 7.610e-53
Identity = 101/190 (53.16%), Postives = 129/190 (67.89%), Query Frame = 1
Query:  136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPAILP-PVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKD 696
             VP +LTLAR++ +P+L  +FY P    N   AA+FA AA+TDWLDGW AR++++ S FGAFLDPVADKL+VAVA+ L+ +     WM    ++I+ REIAVSALREWMA+IG R  VKV + GK KT AQM AL  LL  + P   PA  P  V F  G W++  +A+LT+ SG  YL AAWPALM  +
Sbjct:    4 TVPTMLTLARIVMIPVLVLVFYLPYKWSNFASAAVFALAAVTDWLDGWIARRYDLHSAFGAFLDPVADKLMVAVALFLIVQGHPTPWMAFWAAVIVGREIAVSALREWMAEIGQRATVKVAVIGKIKTMAQMFALLCLLYSVVPGVKPAPWPGDVIFHTGDWMLAAAALLTLWSGAQYLIAAWPALMADE 193          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: UPI001389785E (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Pseudoxanthomonas taiwanensis TaxID=176598 RepID=UPI001389785E)

HSP 1 Score: 178 bits (452), Expect = 1.430e-52
Identity = 100/190 (52.63%), Postives = 125/190 (65.79%), Query Frame = 1
Query:  142 PNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLL-LQPSAAPA--ILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDA 699
            P  LTLAR++ +P+L  +FY P    N   A +F  AA+TDWLDGWWAR++   S FGAFLDPVADK++VAVA+ L+ +     WM    ++I+ REIAVSALREWMA+IG R  VKV M GK KT AQMVAL  LL  + P+ AP    L    F  G WL+  +A+LT+ SG  YL AAWPAL   +A
Sbjct:    6 PTWLTLARIVMIPVLVLVFYLPYRWTNFAAAGVFILAAVTDWLDGWWARRYQQHSAFGAFLDPVADKMMVAVALFLIVQGHPTPWMAFWAAVIVGREIAVSALREWMAEIGQRATVKVAMIGKIKTTAQMVALACLLYSVSPNRAPTGIWLGEFVFHVGDWLLAIAALLTLWSGGQYLYAAWPALRADEA 195          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A370DFG8_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=6 Tax=Bacteria TaxID=2 RepID=A0A370DFG8_9GAMM)

HSP 1 Score: 176 bits (447), Expect = 4.970e-52
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 1
Query:  130 LWNVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSE-RLGEWMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
            +WN+PN+LTL R++ +P+   +FY P+    I CAA+FA AA+TDWLDG+ AR++   SPFGAFLDPVADKL+VAVA++LL +     W+ +  +II+ REI +SALREWMA +GAR  V V + GK KTAAQM+A+  L++ Q      I        G  L+  SA+LT+ S   YL+AAWP+LMGK
Sbjct:    1 MWNIPNLLTLLRIVLIPVFVLIFYLPVEWARIGCAAVFALAAVTDWLDGFLARRWGQVSPFGAFLDPVADKLMVAVALLLLVQSEPTPWLALPAAIIIGREITISALREWMAALGARAQVAVSVIGKFKTAAQMLAILLLIIQQDLWGLPI-----HTVGFVLLYISAILTLWSMVIYLRAAWPSLMGK 184          
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Match: A0A5B2ZB81_9GAMM (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Arenimonas fontis TaxID=2608255 RepID=A0A5B2ZB81_9GAMM)

HSP 1 Score: 176 bits (445), Expect = 7.760e-52
Identity = 97/187 (51.87%), Postives = 126/187 (67.38%), Query Frame = 1
Query:  136 NVPNILTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNIASPFGAFLDPVADKLIVAVAMILLSERLGE-WMTVCTSIILCREIAVSALREWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFDAGKWLMIFSAVLTVTSGTGYLQAAWPALMGK 693
             +P +LTL R++ +P+L  +FY P A  NI  AA+F   A TDWLDGW AR+F + S FGAFLDPVADKL VA A++L+ ER    WM + ++II+ REI +SALREWMAQ+GA G+VKV   GK KT  QMVA+T LL  +      +L    F  G+WL+  +A LT+ SG  YL+AAWPA+  K
Sbjct:    4 TIPTLLTLFRILLIPVLVAVFYLPYAWTNIAAAAIFLLGASTDWLDGWIARRFRMFSAFGAFLDPVADKLTVAFALLLVVERHDTPWMALLSAIIIGREITISALREWMAQVGAHGLVKVAGLGKLKTIVQMVAITCLLFEED-----LLGLPVFRIGEWLLAVAATLTLWSGWDYLRAAWPAMRQK 185          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352793 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDG0_9STRA1.230e-166100.00CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A6H5L2F5_9PHAE3.450e-8264.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TJV8_9STRA2.890e-6255.56Cdp-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7S2V0D2_9STRA3.850e-6257.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UZN3_9STRA1.140e-6057.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A521V6W3_9GAMM6.990e-5351.83CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A7Y5D988_LYSSP7.610e-5353.16CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
UPI001389785E1.430e-5252.63CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A370DFG8_9GAMM4.970e-5250.79CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]
A0A5B2ZB81_9GAMM7.760e-5251.87CDP-diacylglycerol--glycerol-3-phosphate 3-phospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_132contigContig_132:13035..14947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352793|estExt_Genemark1.C_Ctg_1320004
BRITEko00000,ko00001,ko01000
KEGG rclassRC00002,RC00017,RC02795
KEGG ReactionR01801
KEGG Pathwayko00564,ko01100,map00564,map01100
KEGG koko:K00995
EC2.7.8.5
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006996,GO:0008150,GO:0008152,GO:0008444,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009668,GO:0009941,GO:0009987,GO:0010027,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0017169,GO:0019637,GO:0030145,GO:0031967,GO:0031975,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0046872,GO:0046914,GO:0061024,GO:0071704,GO:0071840,GO:0090407,GO:1901576
Descriptioncardiolipin synthase activity
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0558@1|root,KOG1617@2759|Eukaryota
Evalue2.58e-83
Seed ortholog2880.D7FID2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Ec32 orthologEc-11_001460.1
TranscriptId353115
TrackFilteredModels1
ProteinId352793
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352793gene_14416Tribonema minus UTEX_B_3156 geneContig_132 13035..14947 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14416_1exon_14416_1Tribonema minus UTEX_B_3156 exonContig_132 13035..13523 +
exon_14416_2exon_14416_2Tribonema minus UTEX_B_3156 exonContig_132 14685..14947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14416CDS_14416Tribonema minus UTEX_B_3156 CDSContig_132 13035..13523 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14416UTR3_14416Tribonema minus UTEX_B_3156 three_prime_UTRContig_132 14907..14947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352793Trimin1|352793|estExt_Genemark1.C_Ctg_1320004Tribonema minus UTEX_B_3156 polypeptideContig_132 13035..14906 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14416 ID=mRNA_14416|Name=jgi.p|Trimin1|352793|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=752bp|location=Sequence derived from alignment at Contig_132:13035..14947+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGAGGCGGCGCAGACGAGGGCGTGAACAGCAGGAAGCACAGGAC
GATTTCACGAACAGCACCCGGGCTGCTAGTCGTGGGGGAGGGCAGCTTGG
CTGAGGTTGAAGGCGTCAATACTCCAACGCTGTGGAATGTGCCAAACATC
CTCACACTGGCAAGGCTCATCTGCGTGCCGATCCTGGGCTTCCTGTTCTA
CGCGCCCATTGCAAACCGCAATATCTGGTGTGCTGCGCTCTTTGCCGGTG
CGGCCATCACGGACTGGCTAGATGGCTGGTGGGCTCGCAAATTCAACATC
GCCAGCCCCTTCGGTGCTTTCCTGGATCCCGTGGCGGACAAGCTCATAGT
AGCAGTTGCCATGATCCTACTGAGTGAGAGGCTGGGGGAGTGGATGACAG
TCTGCACCAGCATCATATTGTGCCGCGAGATAGCGGTGAGTGCGCTGCGG
GAGTGGATGGCACAGATTGGGGCCAGAGGAGTCGTGAAGGTGGGCATGGC
GGGAAAGTGCAAAACGGCTGCGCAGATGGTTGCGCTGACCACACTACTGC
TGCTGCAGCCAAGCGCAGCACCTGCCATCCTGCCACCCGTGGCGTTTGAT
GCCGGGAAGTGGCTCATGATCTTCAGTGCAGTGCTGACTGTTACCAGCGG
GACAGGGTACTTGCAGGCAGCCTGGCCAGCACTTATGGGGAAGGATGCAC
ATGGCAAGTAGATGAGCGAGCACTGCGTGACAGATTTTAATGAACACATT
TA
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protein sequence of jgi.p|Trimin1|352793

>Trimin1|352793|estExt_Genemark1.C_Ctg_1320004 ID=Trimin1|352793|estExt_Genemark1.C_Ctg_1320004|Name=jgi.p|Trimin1|352793|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=237bp
MRGGGADEGVNSRKHRTISRTAPGLLVVGEGSLAEVEGVNTPTLWNVPNI
LTLARLICVPILGFLFYAPIANRNIWCAALFAGAAITDWLDGWWARKFNI
ASPFGAFLDPVADKLIVAVAMILLSERLGEWMTVCTSIILCREIAVSALR
EWMAQIGARGVVKVGMAGKCKTAAQMVALTTLLLLQPSAAPAILPPVAFD
AGKWLMIFSAVLTVTSGTGYLQAAWPALMGKDAHGK*
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mRNA from alignment at Contig_132:13035..14947+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14416 ID=mRNA_14416|Name=jgi.p|Trimin1|352793|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1913bp|location=Sequence derived from alignment at Contig_132:13035..14947+ (Tribonema minus UTEX_B_3156 )
ATGAGAGGAGGCGGCGCAGACGAGGGCGTGAACAGCAGGAAGCACAGGAC GATTTCACGAACAGCACCCGGGCTGCTAGTCGTGGGGGAGGGCAGCTTGG CTGAGGTTGAAGGCGTCAATACTCCAACGCTGTGGAATGTGCCAAACATC CTCACACTGGCAAGGCTCATCTGCGTGCCGATCCTGGGCTTCCTGTTCTA CGCGCCCATTGCAAACCGCAATATCTGGTGTGCTGCGCTCTTTGCCGGTG CGGCCATCACGGACTGGCTAGATGGCTGGTGGGCTCGCAAATTCAACATC GCCAGCCCCTTCGGTGCTTTCCTGGATCCCGTGGCGGACAAGCTCATAGT AGCAGTTGCCATGATCCTACTGAGTGAGAGGCTGGGGGAGTGGATGACAG TCTGCACCAGCATCATATTGTGCCGCGAGATAGCGGTGAGTGCGCTGCGG GAGTGGATGGCACAGATTGGGGCCAGAGGAGTCGTGAAGGTGAGCCAATC GCCTTCATTTGCAGCCAGCCTGGCAATGTTGTTGTGTAGGTTTATGGTCC TGGGATGGTCGAGCACAACTTTTTGCTGTTTGCTATCTGTGATCCTGATC ACCATCAGAATTGTAGCCAGTGTGGTGGTTCACAGCACCGCTCATTCCAA CAATAGATCAGCCAGGATCCGTGTCACTGCGCATGCCAGCTTGTTGGTCT TTATGTAAGTGCTGTCACATTGTTGTGAGCCTTGCGCTGCCCCGATGCTA GCAGATCATCGGTGCATTCTGTGGAGGTAGTGAGAGACACCATGACAATG TAGTGGAGTGATTCAGACCGGCAAGCTGAGCTGTAGGTACTCCCTGACGA GCCCGATGCATACCGCTTTACACCTTTTCATGCGGCATCAGTAGCGTGTC TGAATTCACACCCAAATGTGTTTCGCTTTGACTCATCTGCTTGCGGGGTG GTTGACCTTGACCACTGCAGTCATACTTTCACTGCTCGCAAGCACAGTAG TACCAATGCTTCGTGTGAATGAATGCAGAAGCTGCTGCCATGATTATCAT AACTTGAATCGAGGAGTGCACAGTACAGTGCACCCACTTTTTGTGGTGAC ATGTACACTGCACACGTACTTTGTTGAGGAAGTACACACAGGAGGACGTA GGGGAGGATCCCGAGATGCCATTTGGCGGCGGCGGCGTTTGAGTGGTTGT CGTTGAGACACTTTCAGAAGTCACATGACATGCAGATTCCGTACAGCAGC ATCAAGTTAGACCATCATCTGGTCTTTTTCGCGCCCTGAGCGAGAATTAA TAAAAAGTACACCCAGCTCTGATCGTACCAGTTGTACCGACGACATGACA GTAGTGACTGGCACCATGTCTACCTTCATGACGTAGTGCTAGGACGGTGA AGAATGGCATTCGCTTTCCCATGTCATTCATGGGGTTGCCTGCTGTCCGC CGGCATGCAGAAGCAGTTGTTTTGCATGCCTGCGCATTCACACCATGAGC TATGCCGCACCATTCAGGTGCGATCAGTGGCACCGATCGTGTGCTGAGGT TGCGCGCAACGCCAATTCGTGGCATTGTGTAAGAGTCTAAGACATCTGCT GACATGTTTGGAATGCTGCCTGTGTCAATACCGTTTGTTCTGTTCTATAG GTGGGCATGGCGGGAAAGTGCAAAACGGCTGCGCAGATGGTTGCGCTGAC CACACTACTGCTGCTGCAGCCAAGCGCAGCACCTGCCATCCTGCCACCCG TGGCGTTTGATGCCGGGAAGTGGCTCATGATCTTCAGTGCAGTGCTGACT GTTACCAGCGGGACAGGGTACTTGCAGGCAGCCTGGCCAGCACTTATGGG GAAGGATGCACATGGCAAGTAGATGAGCGAGCACTGCGTGACAGATTTTA ATGAACACATTTA
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Coding sequence (CDS) from alignment at Contig_132:13035..14947+

>mRNA_14416 ID=mRNA_14416|Name=jgi.p|Trimin1|352793|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=711bp|location=Sequence derived from alignment at Contig_132:13035..14947+ (Tribonema minus UTEX_B_3156 )
ATGAGAGGAGGCGGCGCAGACGAGGGCGTGAACAGCAGGAAGCACAGGAC
GATTTCACGAACAGCACCCGGGCTGCTAGTCGTGGGGGAGGGCAGCTTGG
CTGAGGTTGAAGGCGTCAATACTCCAACGCTGTGGAATGTGCCAAACATC
CTCACACTGGCAAGGCTCATCTGCGTGCCGATCCTGGGCTTCCTGTTCTA
CGCGCCCATTGCAAACCGCAATATCTGGTGTGCTGCGCTCTTTGCCGGTG
CGGCCATCACGGACTGGCTAGATGGCTGGTGGGCTCGCAAATTCAACATC
GCCAGCCCCTTCGGTGCTTTCCTGGATCCCGTGGCGGACAAGCTCATAGT
AGCAGTTGCCATGATCCTACTGAGTGAGAGGCTGGGGGAGTGGATGACAG
TCTGCACCAGCATCATATTGTGCCGCGAGATAGCGGTGAGTGCGCTGCGG
GAGTGGATGGCACAGATTGGGGCCAGAGGAGTCGTGAAGGTGGGCATGGC
GGGAAAGTGCAAAACGGCTGCGCAGATGGTTGCGCTGACCACACTACTGC
TGCTGCAGCCAAGCGCAGCACCTGCCATCCTGCCACCCGTGGCGTTTGAT
GCCGGGAAGTGGCTCATGATCTTCAGTGCAGTGCTGACTGTTACCAGCGG
GACAGGGTACTTGCAGGCAGCCTGGCCAGCACTTATGGGGAAGGATGCAC
ATGGCAAGTAG
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