mRNA_13626 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A836CLX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX5_9STRA) HSP 1 Score: 376 bits (966), Expect = 4.340e-132 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 Query: 1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH 558 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH Sbjct: 1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH 186
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S2D2G9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D2G9_9STRA) HSP 1 Score: 170 bits (430), Expect = 1.490e-45 Identity = 83/168 (49.40%), Postives = 113/168 (67.26%), Query Frame = 1 Query: 10 YASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRP--EAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLE 507 Y D A LP + +WAPHG+L++PTL E GA+G F LEVHSD P+ LP+ SR LA EW E ++GG+H+H ++W++NP + LRL ++V+I+LSRP A W+A DSVG M+GFY++ G P R V H+GKPW E+PFVP + V+TP+ FVLE Sbjct: 737 YKRSDVAMLMLPNVSVNWAPHGLLLIPTLSEIGAKGQFVLEVHSDYPVVVESLPDTKSRTLAGEWTESNSGGSHMH-QSWKKNPLYHLRLLGNKRSKVKISLSRPAGNASWKAQTGKDSVGSMIGFYLVQGPAPTRDAAEVYHDGKPWSETPFVPMNSVSTPSNFVLE 903
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: D8LK55_ECTSI (Calpain_III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK55_ECTSI) HSP 1 Score: 154 bits (389), Expect = 4.700e-44 Identity = 81/179 (45.25%), Postives = 112/179 (62.57%), Query Frame = 1 Query: 1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTV 537 MS Y S +A+ L +LRRD+ P+G+ +V ELPE TSR +AAEW +AGG+H+H + W +NP F L+LR G +VRI+LSRPE +W+ C DSVGCMMGFY++ G++P R A+ HEG+P++ SP VPTH V+TP GF+L++ DD FT+ Sbjct: 1 MSDYRSTEASTLMLKSLRRDFMPNGLFLV------------------------EELPETTSRTIAAEWGTQTAGGSHIHPD-WTKNPCFHLKLRTTGPTKVRISLSRPEKDWKNKCIRDSVGCMMGFYLMSGSKPNRNQ-AIFHEGRPYEGSPMVPTHEVSTPPGFMLDNTSEDDIFTI 153
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S1U0F0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0F0_9STRA) HSP 1 Score: 156 bits (395), Expect = 8.160e-41 Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 1 Query: 73 GVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAV-LHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTV 537 G++V P L RG +G + LEVHS LPL L + + LA EWAEGSAGG+H+H ++W++NP FQLRL G A+V++ LSRPE W ++VG MMGFY+ G RP R GAV L GKPW +S FVP+ V TP F+LE DD +T+ Sbjct: 798 GLIVSPCLSSRGTKGTYVLEVHSSLPLRIEGLTDGADKTLAGEWAEGSAGGSHIHTDSWKKNPKFQLRLNSTGPAQVKVRLSRPEDYWAPKMLRNAVGAMMGFYIYQGQRPNR--GAVTLVNGKPWSDSAFVPSLDVCTPQNFILEPLPDDDFYTI 951
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A6H5KJK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK2_9PHAE) HSP 1 Score: 137 bits (344), Expect = 3.550e-38 Identity = 63/118 (53.39%), Postives = 88/118 (74.58%), Query Frame = 1 Query: 82 VVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHE 435 +VPTL E+G +GA++LE+HSD ++ ELPE TSR +AAEW +AGG+H+H + W++NP F L+LR G +VRI+LSRPE +W+ C DSVGCMMGFY++ G++P R A+ HE Sbjct: 1 MVPTLSEKGVKGAYSLEIHSDHAVEVEELPETTSRTIAAEWGTQTAGGSHIHPD-WKKNPCFHLKLRTTGPTKVRISLSRPEKDWKNKCIRDSVGCMMGFYLMSGSKPNRNQ-AIFHE 116
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S2HTQ9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTQ9_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.380e-37 Identity = 76/177 (42.94%), Postives = 112/177 (63.28%), Query Frame = 1 Query: 1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAF 531 M+SY S A LP L WAP GV+VVP++ E GA G F+L+V SD + +P S A++ +WAEG+AGG H+H+ TW++NP + +R ARV+I L R +W+ + VG M+G YV+ G RP R +V+HEG+PW E+ F+P + V+TP FVL+++ DD++ Sbjct: 806 MTSYTSGTVAPMKLPDLSPSWAPEGVMVVPSISEAGATGQFSLQVFSDRDITVECVPPLRSTAISGKWAEGTAGGCHMHS-TWQKNPIYHIRFSRKVRARVKITLFRNTVDWKEQLKKGGVGTMLGLYVVRGKRPNRDCPSVMHEGQPWSETSFLPMNEVSTPPQFVLDNS--DDSY 979
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A8K1FRV3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRV3_PYTOL) HSP 1 Score: 138 bits (347), Expect = 2.330e-34 Identity = 76/191 (39.79%), Postives = 109/191 (57.07%), Query Frame = 1 Query: 1 MSSYASPDAAAAALPALRRDWAPH---GVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRA-----------------PGAVLHEGKPWDESPFVPTHCVATPAGFVLESA 513 +S Y+SP A L L ++W G++++PTLGE A G F ++V D PL ELP+ T+++L EW E + G HL+A+ W++NP F L L+ A+V+I L+R E EW+ C+ D+VG M+GFYV HG R VRA P ++ G+PW E+ FVP H V +P +L SA Sbjct: 845 ISDYSSPIVACMYLRKLPKEWLLEDQGGLMIIPTLGEVNAEGTFDIQVDPDFPLLLDELPKFTTQSLPGEWTEATGVGCHLYAD-WKKNPKFYLHLKAVRPAKVKITLTRSELEWKGKCKRDAVGTMLGFYVFHGQRLVRAGEAHHNNNNGPGNAPTLPHNIIVNGRPWSETDFVPLHSVTSPPELILPSA 1034
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: D0ND88_PHYIT (Calpain catalytic domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0ND88_PHYIT) HSP 1 Score: 108 bits (271), Expect = 3.650e-24 Identity = 73/193 (37.82%), Postives = 100/193 (51.81%), Query Frame = 1 Query: 1 MSSYASPDAAAAALPALRRDW-----APH--------GVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHG-----TRPVRAPGA----VLHEGKPWDESPFVPTHCVATPAGFVLESA 513 +SSYASP +A L + ++W +P G+L+VPTLGE GA G+F L+V D PL ELP+ AG NP F L+++ +VRI L+R E EW++ CQ DSVG M+GFY+L G RP GA ++ G+PW E+ FVP H V++P VL +A Sbjct: 859 LSSYASPASACLFLRKVPKEWLLASDSPSSVNSSGGGGLLLVPTLGEAGAEGSFELQVDCDFPLLVDELPK-------------GAGA----------NPKFYLQIQGVRPTKVRITLTRSEREWKSRCQRDSVGTMIGFYLLRGGSSKLVRPAEEGGANSNPIVINGRPWSETDFVPLHAVSSPPDLVLSAA 1028
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S1C892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C892_9STRA) HSP 1 Score: 100 bits (248), Expect = 4.280e-21 Identity = 62/161 (38.51%), Postives = 92/161 (57.14%), Query Frame = 1 Query: 1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAAR-VRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKP--WDESPFVPTH 474 ++SY + A L + DW G+LV P + G G F L++ S+ L +EL + SR + W++ +A G HLH E W+RNPAFQ+ L+D A +I LSRPE W+A +ADSVGCM+GFY++ R + ++G+ + E+ FVP H Sbjct: 705 LTSYYTDAKVATTLLKVPADWLRDGLLVHPAMKLPGREGEFTLQLFSETQLMMQELSQGHSRTVTGSWSDKNAMGCHLHPE-WKRNPAFQIVLQDRPVAMDCKITLSRPEDRWKAMARADSVGCMIGFYLVTCDRER---DSKFNDGRKDFFQETSFVPMH 861 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13626 ID=mRNA_13626|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_131:229824..230924- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCCTCCTACGCGTCCCCCGACGCCGCGGCGGCCGCGCTCCCCGCGCTback to top protein sequence of jgi.p|Trimin1|175916 >Trimin1|175916|e_gw1.131.9.1 ID=Trimin1|175916|e_gw1.131.9.1|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPback to top mRNA from alignment at Contig_131:229824..230924- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13626 ID=mRNA_13626|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1101bp|location=Sequence derived from alignment at Contig_131:229824..230924- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_131:229824..230924- >mRNA_13626 ID=mRNA_13626|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_131:229824..230924- (Tribonema minus UTEX_B_3156 )back to top |